cluster # 9722

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Schistosoma mansoni
cluster # 9722 cluster # 9722 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9722#0 length = 322 sequences # 4
consensus_9722#1 length = 287 sequences # 3

consensus_9722#2 length = 274 sequences # 1
consensus_9722#3 length = 248 sequences # 1
consensus_9722#4 length = 173 sequences # 2

consensusID : consensus_9722#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 322
fasta sequence

                              [TCTA-TGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTATGGCAAAAGAAAAGT]

[+] EMBL CD065694             [TCTA TGCACACA   TGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTA               ]
[+] EMBL CD167393             [ CTA TGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTA TGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCGAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTATGGCAAAAGAAAAGT]
[-] EMBL CD128311             [ CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTAT              ]
[+] EMBL CD167209             [ CTA TGCACACACATTGTTCTCCGTAA TTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAATGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTA               ]




>consensus_9722#0
TCTATGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTT
AAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAAT
TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTC
AGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGT
TTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAG
CACTTTATGGCAAAAGAAAAGT

consensusID : consensus_9722#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 287
fasta sequence

                              [CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTTTGGCAAAAGAAAAGTTCCGTGAGCCGTCGG]

[-] EMBL CD167234             [CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTATGGCAAAAGAAAAGTTCCGTGAGCCGTCGG]
[-] EMBL CD167426             [CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTTTa                            ]
[-] EMBL CD065680             [CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCCTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGC CTTat                            ]




>consensus_9722#1
CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTT
AAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAAT
TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTC
AGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGA
AGGGTAAATCAGCACTTTGGCAAAAGAAAAGTTCCGTGAGCCGTCGG

consensusID : consensus_9722#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [CTATTGCACACACATTGTTCTTCTTTTAAAGACAGCTCGAAGAAATCTGATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGGAACTCGCAAATGAAAGTTCAGGTGTCGTCCAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTTCCAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTAT]

[-] EMBL CD167430             [CTATTGCACACACATTGTTCTTCTTTTAAAGACAGCTCGAAGAAATCTGATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGGAACTCGCAAATGAAAGTTCAGGTGTCGTCCAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTTCCAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTAT]




>consensus_9722#2
CTATTGCACACACATTGTTCTTCTTTTAAAGACAGCTCGAAGAAATCTGATATCTGTATT
TGCACCCGTTTTTACTGCTTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAA
AGGATTGGAACTCGCAAATGAAAGTTCAGGTGTCGTCCAGTAGTTTTCGAATGGCGTTGT
TTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTTCCAGCGTATTTCTGT
GCGTGAAGAAATGAAGGGTAAATCAGCACTTTAT

consensusID : consensus_9722#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [GCTCACGGAACTTTGGACTTGTGTCTATGACACACATTGTTCTCCGTAATTTTTCTTACTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTTTA]

[+] EMBL CD167291             [GCTCACGGAACTTTGGACTTGTGTCTATGACACACATTGTTCTCCGTAATTTTTCTTACTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTTTA]




>consensus_9722#3
GCTCACGGAACTTTGGACTTGTGTCTATGACACACATTGTTCTCCGTAATTTTTCTTACT
CGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATATTTACTGGGATT
ATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCG
AGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCA
GCACTTTA

consensusID : consensus_9722#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 173
fasta sequence

                              [CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGAAGAAATCTAATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATTTGCTGGGATTATCAAGCTTGCAAAGTNTATAAAGGATTGAACTCGCAATGAA]

[-] EMBL CD128387             [CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGAAGAAATCTAATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATTTGCTGGGATTATCAAGCTTGCAAAGTNTATAAAGGATTGAACTCGCAATGAA]
[-] EMBL CD065743             [CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGAAGAAATCTGATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATATACTGGGA TATCAAGC TGCAAAG  TATAAAGGATGGAAC          ]




>consensus_9722#4
CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTT
AAAGACAGCTCGAAGAAATCTAATATCTGTATTTGCACCCGTTTTTACTGCTTATATAAT
TTGCTGGGATTATCAAGCTTGCAAAGTNTATAAAGGATTGAACTCGCAATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9722#1      CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTT 60
consensus_9722#4      CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTT 60
consensus_9722#3      ---------GCTCACGGAACTTTG-GACTTGTGTCTATGACACACATTGTTCTCCGTAAT 50
consensus_9722#0      TCTATGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTT 60
consensus_9722#2      --------------------------------CTATTGCACACACATTGTTCTTC-TTTT 27
                                                       *     *   * * * * **   *  *

consensus_9722#1      AAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAAT 120
consensus_9722#4      AAAGACAGCTCGAAGAAATCTAATATCTGTATTTGCACCCGTTTTTACTGCTTATATAAT 120
consensus_9722#3      TTTTCTTACTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATA-T 109
consensus_9722#0      AAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAAT 120
consensus_9722#2      AAAGACAGCTCGAAGAAATCTGATATCTGTATTTGCACCCGTTTTTACTGCTTATATAAT 87
                              **** ******** *********** ******  ********* ****** *

consensus_9722#1      TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTC 180
consensus_9722#4      TTGCTGGGATTATCAAGCTTGCAAAGTNTATAAAGGATTGAA-CTCGCAA-TGAA----- 173
consensus_9722#3      TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTC 169
consensus_9722#0      TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTC 180
consensus_9722#2      TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGGAACTCGCAAATGAAAGTTC 147
                      ** **********************   ************ * *** *** ****     

consensus_9722#1      AGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGA 240
consensus_9722#4      ------------------------------------------------------------
consensus_9722#3      AGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGA 229
consensus_9722#0      AGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGT 240
consensus_9722#2      AGGTGTCGTCCAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGT 207
                                                                                  

consensus_9722#1      AGGGTAAATCAGCACTTTGGCAAAAGAAAAGTTCCGTGAGCCGTCGG------------- 287
consensus_9722#4      ------------------------------------------------------------
consensus_9722#3      AGGGTAAATCAGCACTTTA----------------------------------------- 248
consensus_9722#0      TTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAG 300
consensus_9722#2      TTGGTTTCCGTGCACTTTCCAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGC 267
                                                                                  

consensus_9722#1      ----------------------
consensus_9722#4      ----------------------
consensus_9722#3      ----------------------
consensus_9722#0      CACTTTATGGCAAAAGAAAAGT 322
consensus_9722#2      ACTTTAT--------------- 274