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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 888 fasta sequence
[CTTATAGGTCTCAACTTGCTGAAGTAGATTTAGGGAATCTGCTTATTGAAGATAAGTGTCCCTTGAACCAGTTTAATGAAGCAGTTTCGTCCTTGGATGATGATCATTATCGAACCATTTCTCTCGATTGTACCTATCATTTCTTCAAGCTATTTTTCGAACTACCAACGGAATTAAATGATTCTGTATCTGTTTCCATCCTCCCAAAACCTACTTTTCGTCTCCCCAGAGAGAAAAAGATCCCCTCAGCCAAAGAACTTACTAGATGGGACAGATTTGCACGCTTAAAAGGAATCCAGAATCGCAAGAAGTCCCGCAAAGTTTGGGATCCTGTGTCCGAATCATGGAAACCAAGATGGGGTAAAGACCGGATCGATGATGTCAAAGACAAATGGGTACTGGAAGTTCCGGATAACGCAGATCCCTATGAAGACCAGTTTGCCAAATTAATACAAGCTAAAAAGGAACGTAGAGCCAAAAACGAGCTCCAGCGTCTCCGTAATATTGCCCGAACTGTCAAAGCAGGACAAGCTCCTCCTATTGG-GTATTAACGGAATCACAGTCATCTAAAACTGAAC-TGTCGCGTGCTTTTGCAATTGCTCAAAACTCTGATGCATCAATGGGTCGTTTTTCTGCTCCAGTGGATAACCGAAAACTTTCTAAGAATGTTGAAAAACGATCTAAGAAAAGAATTCCATTGAGTCAAGTTGTTCAAAGTACCAAAAAGAGTAAACAGAATAAGTTGATGTCTAAAAAAACGAAAAAGAATAAGATGAGTTCACGCCCTTCTAAAAAGAAATAGTTTTTTTGTCAATAAGCTTCTTTGTATATATACATACATAACTATTTAAAAATACACTTCTCAGTCTTTAAAAAAAAAAAAAAAAA]
[+] EMBL AI976078 [CTTATAGGTCTCAACTTGCTGAAGTAGATTTAGGGAATCTGCTTATTGAAGATAAGTGTCCCTTGAACCAGTTTAATGAAGCAGTTTCGTCCTTGGATGATGATCATTATCGAACCATTTCTCTCGATTGTACCTATCATTTCTTCAAGCTATTTTTCGAACTACCAACGGAATTAAATGATTCTGTATCTGTTTCCATCCTCCCAAAACCTACTTTTCGTCTCCCCAGAGAGAAAAAGATCCCCTCAGCCAAAGAACTTACTAGATGGGACAGATTTGCACGCTTAAAAGGAATCCAGAATCGCAAGAAGTCCCGCAAAGTTTGGGATCCTGTGTCCGAATCATGGAAACCAAGATGGGGTAAAGACCGGATCGATGATGTCAAAGACAAATGGGTACTGGAAGTTCCGGATAACGCAGATCCCTATGAAGACCAGTTTGCCAAATTAATACAAGCTAAAAAGGAACGTAGAGCCAAAAACGAGCTNCAGCGTCTCCGTAATATTGCCCGAACTGTCAAAGCAGGACAAGCTCCTCCTATTGG GTATTAACGGAATCACAGTCAT ]
[+] EMBL AW017264 [CTTATAGGTCTCAACTTGCTGAAGTAGATTTAGGGAATCTGCTTATTGAAGATAAGTGTCCCTTGAACCAGTTTAATGAAGCAGTTTCGTCCTTGGATGATGATCATTATCGAACCATTTCTCTCGATTGTACCTATCATTTCTTCAAGCTATTTTTCGAACTACCAACGGAATTAAATGATTCTGTATCTGTTTCCATCCTCCCAAAACCTACTTTTCGTCTCCCCAGAGAGAAAAAGATCCCCTCAGCCAAAGAACTTACTAGATGGGACAGATTTGCACGCTTAAAAGGAATCCAGAATCGCAAGAAGTCCCGCAAAGTTTGGGATCCTGTGTCCGAATCATGGAAACCAAGATGGGGTAAAGACCGGATCGATGATGTCAAAGACAAATGGGTACTGGAAGTTCCGGATAACGCAGATCCCTATGAAGACCAGTTTGCCAAATTAATACAAGCTAAAAAAGAACGTAGAGCCAAAAACGAGCTCCAGCGTCTNCGTAATATTGCCCGAACTGTCAAAGC ]
[+] EMBL CD084340 [ TGCTTATTGAAGATAAGTGTCCCTTGAACCAGTTTAATGAAGCAGTTTCGTCCTTGGATGATGATCATTATCGAACCATTTCTCTCGATTGTACCTATCATTTCTTCAAGCTATTTTTCGAACTACCAACGGAATTAAATGATTCTGTATCTGTTTCCATCCTCCCAAAACCTACTTTTCGTCTCCCCAGAGAGAAAAAGATCCCCTCAGCCAAAGAACTTACTAGATGGGACAGATTTGCACGCTTAAAAGGAATCCAGAATCGCAAGAAGTCCCGCAAAGTTTGGGATCCTGTGTCCGAATCATGGAAACCAAGATGGGGTAAAGACCGGATCGATGATGTCAAAGACAAATGGGTACTGGAAGTTCCGGATAACGCAGATCCCTATGAAGACCAGTTTGCCAAATTAATACAAGCTAAAAAGGAACGTAGAGCCAAAAACGAGCTCCAGCGTCTCCGTAATATTGCCCGAACTGTCAAAGCAGGACAAGCTCCTCCTATTGGCGTATTAACGGAAT ]
[+] EMBL CD192616 [ GAAAAAGATCCCCTCAGCCAAAGAACTTACTAGATGGGACAGATTTGCACGCTTAAAAGGAATCCAGAATCGCAAGAAGTCCCGCAAAGTTTGGGATCCTGTGTCCGAATCATGGAAACCAAGATGGGGTAAAGA ]
[+] EMBL CD192111 [ GAAAAAGATCCCCTCAGCCAAAGAACTTACTAGATGGGACAGATTTGCACGCTTAAAAGGAATCCAGAATCGCAAGAAGTCCCGCAAAGTTTGGGATCCTGTGTCCGAATCATGGAAACCAAGATGGGGTAAAGA ]
[+] EMBL CD192871 [ CAAAGAACTTACTAGATGGGACAGATTTGCACGCTTAAAAGGAATCCAGAATCGCAAGAAGTTCCGCAAAGTTTGGGATCCTGTGTCCGAATCATGGAAACCAAGATGGGGTAAAGA ]
[+] EMBL CD164717 [ GTTTGGGATCCTGTGTCCGAATCATGGAAACCAAGATGGGGTAAAGACCGGATCGATGATGTCAAAGACAAATGGGTACTGGAAGTTCCGGATAACGCAGATCCCTATGAAGACCAGTTTGCCAAATTAATACAAGCTAAAAAGGAACGTAGAGCCAAAAACGAGCTCCAGCGTCTCCGTAATATTGCCCGAACTGTCAAAGCA ]
[-] EMBL AI395505 [ ACTGTCAAAGCAGGACAAGCTCCTCCTATTGGCGTATTAACGGAATCACAGTCATCTAAAACTGAAC TGTCGCGTGCTTTTGCAATTGCTCAAAACTCTGATGCATCAATGGGTCGTTTTTCTGCTCCAGTGGATAACCGAAAACTTTCTAAGAATGTTGAAAAACGATCTAAGAAAAGAATTCCATTGAGTCAAGTTGTTCAAAGTACCAAAAAGAGTAAACAGAATAAGTTGATGTCTAAAAAAACGAAAAAGAATAAGATGAGTTCACGCCCTTCTAAAAAGAAATAGTTTTTTTGTCAATAAGCTTCTTTGTATATATACATACATAACTATTTAAAAATACACTTCTCAGTCTTTAAAAAAAAAAAAAAA ]
[-] EMBL AI395535 [ TATTAACGGGATCACAGTCATCTAAAACTGAACTTGTCG GTGCTTTTGCAATTGCTCAAAACTCTGATGCATCAATGGGTCGTTTTTCTGCTCCAGTGGATAACCGAAAACTTTCTAAGAATGTTGAAAAACGATCTAAGAAAAGAATTCCATTGAGTCAAGTTGTTCAAAGTACCAAAAAGAGTAAACAGAATAAGTTGATGTCTAAAAAAACGAAAAAGAATAAGATGAGTTCACGCCCTTCTAAAAAGAAATAGTTTTTTTGTCAATAAGCTTCTTTGTATATATACATACATAACTATTTAAAAATACACTTCTCAGTCTCTAAAAAAAAAAAAAAAAA]
consensusID : consensus_9731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[ACGTAATCTTATCTAACCGGTGTTGACTTCTGATCATCCCGGTNTGTGTCAGAAGACTAAGGGGCTCTTACAATAACCACAAAGAAATCAGTTTTGGTAATATAGTATCTTAAATATAGTCATCTGATGCTGGCCGAAATAATACAGAGTATATATATATATATATATATACCAATAATCTTGTTTTACCAGCTCCTCCTATTGGCGTATTAACGGAATCACAGTCATCTAAAACTGAACTGTCGNCGGCTTTTGCAATTGCTCAAAACTCTGATGCATCAATGGGTCTTTTTTCTGCTCCAGTGGATAGCCGAAAACTTCCTAAGAATGTTGAGTAAGTTTATTTTGTATTCTGCCTAACATCTGTTTTATTATAGGAAACGATCTAAGAAAAGAATTCCATTGAGTCAAGTTGTTCAAAGTACCAAAAAGAGTAAACAGAATAAGTTGATGTCTAAAAAAACGAAAAAGAATAAGATGAGTTCACGCCCTTCTAAAAAGAAATAGTTTTTTTGTCAATAAGCTTCTTTGTATATATACATACATAACTATTTAAA]
[-] EMBL CD161876 [ACGTAATCTTATCTAACCGGTGTTGACTTCTGATCATCCCGGTNTGTGTCAGAAGACTAAGGGGCTCTTACAATAACCACAAAGAAATCAGTTTTGGTAATATAGTATCTTAAATATAGTCATCTGATGCTGGCCGAAATAATACAGAGTATATATATATATATATATATACCAATAATCTTGTTTTACCAGCTCCTCCTATTGGCGTATTAACGGAATCACAGTCATCTAAAACTGAACTGTCGNCGGCTTTTGCAATTGCTCAAAACTCTGATGCATCAATGGGTCTTTTTTCTGCTCCAGTGGATAGCCGAAAACTTCCTAAGAATGTTGAGTAAGTTTATTTTGTATTCTGCCTAACATCTGTTTTATTATAGGAAACGATCTAAGAAAAGAATTCCATTGAGTCAAGTTGTTCAAAGTACCAAAAAGAGTAAACAGAATAAGTTGATGTCTAAAAAAACGAAAAAGAATAAGATGAGTTCACGCCCTTCTAAAAAGAAATAGTTTTTTTGTCAATAAGCTTCTTTGTATATATACATACATAACTATTTAAA]
consensusID : consensus_9731#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[TTTTTTTTTTTTTTTATTAAAGACAACATGATGTATTGAAAATGTGAACAAACAGCATGATTCTGTTCGGTAAATTAAGATAATATAAAGAGAAAACTGAACTTGTTATAAAAAAAGACAAGATCTATTTGATTGTTTTGTATTTCTTTTATTACCCTTGATTCACTAATTTACTGACATTTGGGCTGGATAAAGGCATGATTTAAAAGCCGTATTCCAGACGCTAGAAGATTACGTAACGAACGTTTTCAATCAATGATTACATGTTTCTCTCTGGTGCTGTATACACAATATCAACAATTATTAAAAGTTGAAAGTACTGGCATGGCTTGAGAATTAAGATCAAGTCCAATAAACTTGATAAAACTATTCAACATTCTTAGAAAGTTTTCGGTTATCCACTGGAGCAGGAAAACGACCCATGATGCATC]
[+] EMBL AI395787 [TTTTTTTTTTTTTTTATTAAAGACAACATGATGTATTGAAAATGTGAACAAACAGCATGATTCTGTTCGGTAAATTAAGATAATATAAAGAGAAAACTGAACTTGTTATAAAAAAAGACAAGATCTATTTGATTGTTTTGTATTTCTTTTATTACCCTTGATTCACTAATTTACTGACATTTGGGCTGGATAAAGGCATGATTTAAAAGCCGTATTCCAGACGCTAGAAGATTACGTAACGAACGTTTTCAATCAATGATTACATGTTTCTCTCTGGTGCTGTATACACAATATCAACAATTATTAAAAGTTGAAAGTACTGGCATGGCTTGAGAATTAAGATCAAGTCCAATAAACTTGATAAAACTATTCAACATTCTTAGAAAGTTTTCGGTTATCCACTGGAGCAGGAAAACGACCCATGATGCATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9731#0 CTTATAGGTCTCAACTTGCTGAAGTAGATTTAGGGAATCTGCTTATTGAAGATAAGTGTC 60
consensus_9731#1 ------------------------------------------------------------
consensus_9731#2 ------------------------------------------------------------
consensus_9731#0 CCTTGAACCAGTTTAATGAAGCAGTTTCGTCCTTGGATGATGATCATTATCGAACCATTT 120
consensus_9731#1 ------------------------------------------------------------
consensus_9731#2 ------------------------------------------------------------
consensus_9731#0 CTCTCGATTGTACCTATCATTTCTTCAAGCTATTTTTCGAACTACCAACGGAATTAAATG 180
consensus_9731#1 ------------------------------------------------------------
consensus_9731#2 ------------------------------------------------------------
consensus_9731#0 ATTCTGTATCTGTTTCCATCCTCCCAAAACCTACTTTTCGTCTCCCCAGAGAGAAAAAGA 240
consensus_9731#1 ------------------------------------------------------------
consensus_9731#2 ------------------------------------------------------------
consensus_9731#0 TCCCCTCAGCCAAAGAACTTACTAGATGGGACAGATTTGCACGCTTAAAAGGAATCCAGA 300
consensus_9731#1 ------------------------------------------------------------
consensus_9731#2 ------------------------------------------------------------
consensus_9731#0 ATCGCAAGAAGTCCCGCAAAGTTTGGGATCCTGTGTCCGAATCATGGA-AACCAAGATGG 359
consensus_9731#1 -----------------------------------ACGTAATCTTATCTAACCGGTGTTG 25
consensus_9731#2 ------------------------------------------------------------
consensus_9731#0 GGTAAAGACCGGATCGATG-ATGTCA-AAGACAAATGGGTACTGGAAGTTCCGGATAACG 417
consensus_9731#1 ACTTCTGATCATCCCGGTNTGTGTCAGAAGACTAAGGGGCTCTTACAAT----AACCACA 81
consensus_9731#2 --------------------------------TTTTTTTTTTTTTTTATTAAAGACAACA 28
* * * **
consensus_9731#0 CAGATCCCTATGAAGACCAGTTTGCCAAATTAATACAAGCTAAAAAGGAACGTAGAGCCA 477
consensus_9731#1 AAGAAATCAGTTTTGGTAATATAGTATCTTAAATATAGTCATCTGATGCTGGCCGAAATA 141
consensus_9731#2 TGATGTATTGAAAATGTGAACAAACAGCATGATTCTGTTCGGTAAATTAAGATAATATAA 88
* * * * * * *
consensus_9731#0 AAAACGAGCTCCAGCGTCTCCGTAATATTGCCCGAACTGTCAAAGCAGGACAAGCTCCTC 537
consensus_9731#1 ATACAGAGTATATATATATATATATATATACCAATAATCTT---GTTTTACCAGCTCCTC 198
consensus_9731#2 AGAGAAAACTGAACTTGTTATAAAAAAAGACAAGATCTATTTGATTGTTTTGTATTTCTT 148
* * * * * * * * * **
consensus_9731#0 CTATTGG-GT--ATTAACGGAATCACAGTCATCTAAAACTGAACTGTCGCGTGCTTTTGC 594
consensus_9731#1 CTATTGGCGT--ATTAACGGAATCACAGTCATCTAAAACTGAACTGTCGNCGGCTTTTGC 256
consensus_9731#2 TTATTACCCTTGATTCACTAATTTACTGACATTTGGG-CTGGATAAAGGCATGATTTAAA 207
**** * *** ** * * ** * *** * *** * * * ***
consensus_9731#0 AATTGC--TCAAAACTCTGATGCATCAATGGGTCGTTTTTCTGCTCCAGTGGATAACCGA 652
consensus_9731#1 AATTGC--TCAAAACTCTGATGCATCAATGGGTCTTTTTTCTGCTCCAGTGGATAGCCGA 314
consensus_9731#2 AGCCGTATTCCAGACGCTAGAAGATTACGTAACGAACGTT----TTCAATCAATGATTAC 263
* * ** * ** ** ** * ** * ** * **
consensus_9731#0 AAACTTTCTAAGAATGTTGAA--------------------------------------- 673
consensus_9731#1 AAACTTCCTAAGAATGTTGAGTAAGTTTATTTTGTATTCTGCCTAACATCTGTTTTATTA 374
consensus_9731#2 ATGTTTCTCTCTGGTGCTGTAT-------------------------------------- 285
* ** ** **
consensus_9731#0 ----AAACGATCTAAGAAAAGAATTCCATTGAGTCAAGTTGTTCAAAGTACCAAAAAGAG 729
consensus_9731#1 TAGGAAACGATCTAAGAAAAGAATTCCATTGAGTCAAGTTGTTCAAAGTACCAAAAAGAG 434
consensus_9731#2 ----ACACAATATCAACAA------TTATTAA---AAGTTG---AAAGTACTGGCATGGC 329
* ** ** * * ** *** * ****** ******* * *
consensus_9731#0 TAAACAGAATAAGTTGATGTCTAAAAAAACGAAAAAGAATAAGATGAGTTCACGCCCTTC 789
consensus_9731#1 TAAACAGAATAAGTTGATGTCTAAAAAAACGAAAAAGAATAAGATGAGTTCACGCCCTTC 494
consensus_9731#2 TTGA-GAATTAAGATCAAGTCCAATAAACTTGATAAAACTA-------TTCA-ACATTCT 380
* * * **** * * *** ** *** * ** * ** **** * *
consensus_9731#0 TAAAAAGAAATAGTTTTTTTGTCAATAAGCTTCTTTGTATATATACATACATAACTATTT 849
consensus_9731#1 TAAAAAGAAATAGTTTTTTTGTCAATAAGCTTCTTTGTATATATACATACATAACTATTT 554
consensus_9731#2 TAGAAAGTTTTCGGTTATCCACTGGAGCAGGAAAACG-ACCCATG-ATGCATC------- 431
** **** * * ** * * * ** ** ***
consensus_9731#0 AAAAATACACTTCTCAGTCTTTAAAAAAAAAAAAAAAAA 888
consensus_9731#1 AAA------------------------------------ 557
consensus_9731#2 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||