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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 767 fasta sequence
[GAACAACTTA-TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT-TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG-TTCAAACCGAGAATCAAACAG-CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCAAAACAC-AAGCGGTTGTGCTCCTGGCGACAATGCCGCATACCCGAACAGAACTCAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGATGTAGAAAACTTTCAGAATGCCCTCTCACTAAATTACTTGCATACACAATCTTGTACAAAACAAACTAACCCCGAAACTAATCAGTTAGTGCTGGAAGTTACGTNTTG]
[+] EMBL CD110827 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG TTCAAACCGAGAGTCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCANAACACAAAGC GTTGTGCTCCTGGCGACAGTGCCGCATACCCGAACAGAACTCAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGATGTAGAAAACTTT ]
[+] EMBL CD111860 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGTAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAGnt ]
[+] EMBL CD111991 [GAACAACTTATTGCTTTTAGATAAGTCTCGGGAAGCCCGAGAATCAGAGATTGAGGCTCGAAAACAACGAATCACTAATCTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGG ]
[+] EMBL CD111932 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG TTCAAACCGAGAATCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCTATTAGATTAGAAAGAC AAAACATATCTCTGAAA TCTAATCG AATCGATAA ]
[+] EMBL CD111814 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAGCAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG TTCAAACCGAGAATCAAACAGNCAAAAAAt ]
[+] EMBL CD111953 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAGNTTC AACCG ]
[+] EMBL CD132865 [ ACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG TTCAAACCGAGAATCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCAAAACAC AAGCGGTTGTGCTCCTGGCGACA ]
[-] EMBL CD111972 [ GGCTACAAA TGAGCTGAAAATCANCTTT GAAGCTGAGAAGAAAGATTT GATATCCGAAG TTCAAACCGAGAATCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCAAAACAC AAGCGGTTGTGCTCCTGGCGACAATGCCGCATACCCGAACAGAACTCAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGATGTAGAAAACTTTC ]
[-] EMBL CD195622 [ TTCAAACCGAGAATCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTTCCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAA ]
[+] EMBL CD152182 [ CATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAGACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCAAAACAC AAGCGGTTGTGCTCCTGGCGACAATGCCGCATACCCGAACAGAACTCAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGATGTAGAAAACTTTCAGAATGCCCTCTCACTAAATTACTTGCATACACAATCTTGTACAAAACAAACTAACCCCGAAACTAATCAGTTAGTGCTGGAAGTTACGTNTTG]
consensusID : consensus_9733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence
[GAAGCCAAACGGCTACAAATTGAGCTTGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAGTTCAAACCGAGAATCAAACAGAGCCGCCTATTCACTTCAAACCATTAGGAAGCACACATTAGGAGCACACATTAGCGCGGCTCATTA]
[+] EMBL SMAA69261 [GAAGCCAAACGGCTACAAATTGAGCTTGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAGTTCAAACCGAGAATCAAACAGAGCCGCCTATTCACTTCAAACCATTAGGAAGCACACATTAGGAGCACACATTAGCGCGGCTCATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9733#0 GAACAACTTATGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGA 60
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 AAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAAT 120
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 AATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGA 180
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 CGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCTTGAATCAACTTTGGAAGCT 240
consensus_9733#1 ---------------GAAGCCAAACGGCTACAAATTGAGCTTGAATCAACTTTGGAAGCT 45
*********************************************
consensus_9733#0 GAGAAGAAAGATTTGGATATCCGAAGTTCAAACCGAGAATCAAACAGCAAAAAAATATTC 300
consensus_9733#1 GAGAAGAAAGATTTGGATATCCGA-GTTCAAACCGAGAATCAAACAG-AGCCGCCTATTC 103
************************ ********************** * *****
consensus_9733#0 ACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGT 360
consensus_9733#1 ACTTCAAA-CCATTAGGAAGCACAC--ATTAGGA----------GCACACATTAGCGCGG 150
******** *************** ***** ** ***** ** *
consensus_9733#0 CCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTG 420
consensus_9733#1 CTCATTA----------------------------------------------------- 157
* ****
consensus_9733#0 GAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGG 480
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 ATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTT 540
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 TTGTCTCAAAACACAAGCGGTTGTGCTCCTGGCGACAATGCCGCATACCCGAACAGAACT 600
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 CAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGAT 660
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 GTAGAAAACTTTCAGAATGCCCTCTCACTAAATTACTTGCATACACAATCTTGTACAAAA 720
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 CAAACTAACCCCGAAACTAATCAGTTAGTGCTGGAAGTTACGTNTTG 767
consensus_9733#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||