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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1546 fasta sequence
[GATTCACTAGAGAACAATTCCACTTCTATTATGTACCTAGTATTATGTAGTCGTGTTTCATTATTAATAACTAAATATTCCACACTTAGGTTCACGCAATTCATGTCGCTATTTAAATTCTAGCAGAATCGGACTTCGATAACTTCCAATCATATTTCATTTTGGGAAA-TAT-GA-T-TACATTGTAAA-GACT-GGGGGATGGTT-TT-CGGCTCG-TGCTTAGGATCTGCA-GCATTGAAAACTATTCGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCACCAAATGAGAATTATA-TTGGTGTTCCACGTGTGGATCATTATTGGCTNTGTGCTCATTTGGTTTCAGCGATTATTCTATATTCATTACTTCTGTGGGGTAGCCTTAACCATCTGGCTTCTCATTCTTTAGTTAAACCATTCAGCAGCGTCAAACGACTTAAGGCATATGGTCATATGGGTAAAGCTCTAACGTTCGCAACCATAATTTATGGTGCTTTTGTTGCCGGTCTTGATGCAGGATTAATCTATAATTCATGGCCAAAAATGGCTGATAAGTGGATTCCTGATGATTTAATTGTATCTCGTTATGGTTCTACTGTGAGAAACTTTTTGGACAATCCAACTACAGTTCAATTTATTCATCGGATGCTAGCTTATACAACAGTTNTAACCACAGGATTATTGTGGGTAAATGTCATGCGTTTAGGTGTAGCATGTACAGGACCACGTATTANGAATGCTGCACACTTGGTTTGGGGTGCTGTATTAGGACAGTCATTACTTGGCATAACAACTTTATTATGTTATGTACCAGTTTCATTGGGATCATTGCATCAATGCGGTGGTGTTGTTTTGCTTTCATCCTTACTCTGGTTTACTCATTGTTTACGTGCTGTTCCAAAATAAAAACTTGCTAACACTTTTTTTGTGGGAAGCAATTGCAACTTTTTTTCATCATCTCATTCATTTTCTAGATGTTCCATTATAATCATTGTCAATATAATCTTTATAAATATAATGCACAAAG]
[-] EMBL CD170921 [GATTCACTAGAGAACAATTCCACTTCTATTATGTACCTAGTATTATGTAGTCGTGTTTCATTATTAATAACTAAATATTCCACACTTAGGTTCACGCAATTCATGTCGCTATTTAAATTCTAGCAGAATCGGACTTCGATAACTTCCAATCATATTTCATTTTGGGAAATTATAGA T TACATTGTAAA GACT GGGGGATGGTT TT CGGCTCG TGCTTAGGATCTGCA GCATTGAAAACTATTCGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACTACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTC ]
[+] EMBL CD140066 [ cAT GACTATACTTTGTAAACGACTCGGGGGATGGTTATTCCGGTTCGTTGCTTATGATCTGCATGCATTGAAAACTATTCGACCTGTTGGATTTCATGTACATTTCCCGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGC ]
[+] EMBL CD094968 [ ACTATTCGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTT CCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACCCGGGCCTCACCAATTGTTGGCCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTG ]
[+] EMBL CD094794 [ ACTATTCGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGCCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTG ]
[+] EMBL CD122109 [ TCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCGGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCGCCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCACCAAATGAGAATTATANTTGGTGTTCCACGTGTGGATCATTATTGGCTNTGTGCTCATTTGGTTTCAGCGATTATTCTATATTCATTACTTCTGTGGGGTAGCCTTAACCATCTGGCTTCTCATTCTTTAGT ]
[+] EMBL CD140216 [ atGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCACCAAATGAGAATTATA TTGGTGCTCCACGTGTGGATCATTA ]
[+] EMBL CD079190 [ CCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCACCAAATGAGAATTATA TTGGTGTTCCACGTGTGGATCATTATTGGCTTTGTGCTCATTTGGTTTCAGCGATTATTCTATATTCATTACTTCTGTGGGGTAGCTTTAACCATCTGGCTTCTCATTCTTTAGTTAAACCATTCAGCAGCGTCAAACGACTTAAGGCATATGGTCATATGGGTAAAGCTCTAACGTTCGCAACCATAATTTATGGTGCTTTTGTTGCCGGTCTTGATGCAGGATTAATCTATAATTCATGGCCAAAAATGGCTGATAAGTGGATTCCTGATGATTTAATTGTATCTCGTTATGGTTCTACTGTGAGAAACTTTTTGGACAATCCAACTACAGTTCAATTTATTCATCGGATGCTAGCTTATACAACAGTTNTAACCACAGGATTATTGTGGGTAAATGTCATGCGTTTAGGTGTAGCATGTACAGGACCACGTATTANGAATGCTGCACA ]
[-] EMBL CD136523 [ ATATGGTCATATGGGTAAAGCTCTAACGTTCGCAACCATAATTTATGGTGCTTTTGTTGCCGGTCTTGATGCAGGATTAATCTATAATTCATGGCCAAAAATGGCTGATAAGTGGATTCCTGATGATTTAATTGTATCTCGTTATGGTTCTACTGTGAGAAACTTTTTGGACAATCCAACTACAGTTCAATTTATTCATCGGATGCTAGCTTATACAACAGTTTTAACCACAGGATTATTGTGGGTAAATGTCATGCGTTTAGGTGTAGCATGTACAGGACCACGTATa ]
[+] EMBL SM7421 [ AGGTGTAGNATGTACAGGACCACGTATTAGGAATGCTGCACACTTGGTTTGGGGTGCTGTATTAGGACAGTCATTACTTGGCATAACAACTTTATTATGTTATGTACCAGTTTCATTGGGATCATTGCATCAATGCGGTGGTGTTGTTTTGCTTTCATCCTTACTCTGGTTTACTCATTGTTTACGTGCTGTTCCAAAATAAAAACTTGCTAACACTTTTTTTGTGGGAAGCAATTGCAACTTTTTTTCATCATCTCATTCATTTTCTAGATGTTCCATTATAATCATTGTCAATATAATCTTTATAAATATAATGCACAAAG]
consensusID : consensus_9737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[CGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTCTGCTTGGTGGAGTTACAAGGTTCTCACTATTTCTATTTGTAAACTATTTACTTAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTCAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGT]
[-] EMBL CD120782 [CGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTCTGCTTGGTGGAGTTACAAGGTTCTCACTATTTCTATTTGTAAACTATTTACTTAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTCAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGT]
consensusID : consensus_9737#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[TCCGTCTCTTCATGATGCACATTTGCAACCATTGTTTATATTGTTGAGCTTAGACATTTATACCCAGGATTATTTTCTTAAGCAAAAGCTCGAGATGACTGAGTTGAACAGACTCTGTGTATACTTAACTTTTCGAATTACATTGTAAAGACTGGGGGATGGTTTTCGGCTCGTGCTTAGGATCTGCGGCTTTGAAAACTATTCGACCTGTTGGATTTCATGTTCATTTTCCGAGGTACCTACTTACCTCATCCA]
[+] EMBL CD091757 [TCCGTCTCTTCATGATGCACATTTGCAACCATTGTTTATATTGTTGAGCTTAGACATTTATACCCAGGATTATTTTCTTAAGCAAAAGCTCGAGATGACTGAGTTGAACAGACTCTGTGTATACTTAACTTTTCGAATTACATTGTAAAGACTGGGGGATGGTTTTCGGCTCGTGCTTAGGATCTGCGGCTTTGAAAACTATTCGACCTGTTGGATTTCATGTTCATTTTCCGAGGTACCTACTTACCTCATCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9737#0 GATTCACTAGAGAACAATTCCACTTCTATTATGTACCTAGTATTATGTAGTCGTGTTTCA 60
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 TTATTAATAACTAAATATTCCACACTTAGGTTCACGCAATTCATGTCGCTATTTAAATTC 120
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 TAGCAGAATCGGACTTCGATAACTTCCAATCATATTTCATTTTGGGAAATATGATTACAT 180
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 TGTAAAGACTGGGGGATGGTTTTCGGCTCGTGCTTAGGATCTGCAGCATTGAAAACTATT 240
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 CGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTTACCTCATCCAAATCAACA 300
consensus_9737#1 ----------------------------CGAGGTACCTACTTACCTCATCCAAATCAACA 32
consensus_9737#2 ---------------------------------TCCGTCTCTTCATGATGCACATTTGCA 27
* * * * * * ** ** ** **
consensus_9737#0 -TCAGTATCCGTCCCAGTCAG-TCAGGCAACAAC-TCGGGCCTCACCAATTGTTGGTCGA 357
consensus_9737#1 -TCAGTATCCGTCCCAGTCAG-TCAGGCAACAAC-TCGGGCCTCACCAATTGTTGGTCGA 89
consensus_9737#2 ACCATTGTTTATATTGTTGAGCTTAGACATTTATACCCAGGATTATT--TTCTTAAGCAA 85
** * * * * ** * ** ** * * * * * ** ** * *
consensus_9737#0 TGGCTCTTGG-GTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAG 416
consensus_9737#1 TGGCTCTTGG-GTCTTTCTGGCATGACTTTTGGTGCTATTCTGCTTGGTGGAGTTACAAG 148
consensus_9737#2 AAGCTCGAGATGACTGAGTTGAACAGACTCTGTGTATACTTAACTTT-TCGAATTACATT 144
**** * * ** * * * * ** ** * *** * ** *****
consensus_9737#0 -------------------------------------ATTGACCGAGTCTGGTCTCTCAA 439
consensus_9737#1 GTTCTCACTATTTCTATTTGTAAACTATTTACTTAAGATTGACCGAGTCTGGTCTCTCAA 208
consensus_9737#2 GTAAAGACTG---------GGGGATGGTTTTCGGCTCGTGCTTAGGATCTGCGGCTTTGA 195
* * **** * *
consensus_9737#0 TGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAG 499
consensus_9737#1 TGGTTGACTGGCATCCGTTCAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAG 268
consensus_9737#2 AAACTATTCGAC--CTGTTGGATTTCATGTTCATTTTCCGAGGTACCTACTTACCTC--- 250
* * * * *** * * **** * * * * * *
consensus_9737#0 AATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAA 559
consensus_9737#1 AATTCGAAAAATACAAGAAGT--------------------------------------- 289
consensus_9737#2 -ATCCA------------------------------------------------------ 255
** *
consensus_9737#0 TGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTC 619
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 GGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCT 679
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 CTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTT 739
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 TGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCAC 799
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 CAAATGAGAATTATATTGGTGTTCCACGTGTGGATCATTATTGGCTNTGTGCTCATTTGG 859
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 TTTCAGCGATTATTCTATATTCATTACTTCTGTGGGGTAGCCTTAACCATCTGGCTTCTC 919
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 ATTCTTTAGTTAAACCATTCAGCAGCGTCAAACGACTTAAGGCATATGGTCATATGGGTA 979
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 AAGCTCTAACGTTCGCAACCATAATTTATGGTGCTTTTGTTGCCGGTCTTGATGCAGGAT 1039
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 TAATCTATAATTCATGGCCAAAAATGGCTGATAAGTGGATTCCTGATGATTTAATTGTAT 1099
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 CTCGTTATGGTTCTACTGTGAGAAACTTTTTGGACAATCCAACTACAGTTCAATTTATTC 1159
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 ATCGGATGCTAGCTTATACAACAGTTNTAACCACAGGATTATTGTGGGTAAATGTCATGC 1219
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 GTTTAGGTGTAGCATGTACAGGACCACGTATTANGAATGCTGCACACTTGGTTTGGGGTG 1279
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 CTGTATTAGGACAGTCATTACTTGGCATAACAACTTTATTATGTTATGTACCAGTTTCAT 1339
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 TGGGATCATTGCATCAATGCGGTGGTGTTGTTTTGCTTTCATCCTTACTCTGGTTTACTC 1399
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 ATTGTTTACGTGCTGTTCCAAAATAAAAACTTGCTAACACTTTTTTTGTGGGAAGCAATT 1459
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 GCAACTTTTTTTCATCATCTCATTCATTTTCTAGATGTTCCATTATAATCATTGTCAATA 1519
consensus_9737#1 ------------------------------------------------------------
consensus_9737#2 ------------------------------------------------------------
consensus_9737#0 TAATCTTTATAAATATAATGCACAAAG 1546
consensus_9737#1 ---------------------------
consensus_9737#2 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||