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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 712 fasta sequence
[GGCCAGAATTTGGCACGAGGTTCATGTATGTTACTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTC-GTGAACTGATAGGTGATTTAAAAGAATTTAAACAACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATCGTGTATGGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATTAAAACAAAATGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTTATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT]
[+] EMBL CD079525 [GGCCAGAATTTGGCACGAGGTTCATGTATGTTACTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTC GTGAACTGATAGGTGATTTAAAAGAATTTAAACAACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATCGTGTATGGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATTAAAACAAAATGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTNTGAGTTATTTGATGTTGTATTGCANAGAAATATACCCAAATACATATACATG ]
[-] EMBL CD073791 [ TGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTC GTGAACTGATAGGTGATTTAAAAGAATTTAAACAACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATCGTGTATGGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATTAAAACAAAATGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTTATTTGATGTTGTATTGCAAAGGAATATACCCAAATACA AAACATGT]
[-] EMBL AI026216 [ CAAAAGATTTGGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATAGGATATTACTGAACATGTTC GTGAACTGATAGGTGATTTAAAAGAATTTAAACAACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATCGTGTATGGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATT AAACAAAATGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTTATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT]
[-] EMBL AI740434 [ nnncaanGTTCTGTGAACNGATTGGGGATTTTTAAGAATTTTTACAACCGGAAACTAAAGAAACCTCAAATAAATTNAAACAATTTTTTGATGAAACATATGATCGTGTTTTGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATTAAAACAAAATGGATTGAAACATTAATCTTAGTTTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTTATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT]
consensusID : consensus_9738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 418 fasta sequence
[GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTCGTGAACTGATAGGTGATTTAAA]
[+] EMBL CD161034 [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTCGTGAACTGATAGGTGATTTAAA]
[+] EMBL CD159233 [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAA ]
[+] EMBL CD159240 [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAATAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAA ]
[+] EMBL CD159329 [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTATGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAGAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAA ]
[+] EMBL AW061381 [ AATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAAC AAGTTAATGCTACTTCAACACC AAAGTTTC AAAGA TTTGAAATTTTTTTA CTAAATTG C CCCCACG TGAATA GATA CACTG CATATGC TGAACAGCTAGa ]
[+] EMBL CD161099 [ TCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGGAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTCGTGAACTGATAGGTGATTTAAA]
consensusID : consensus_9738#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[AGTTTTAAACAGCGACACTAAGAATCTCAAAAAATAAACATTTGAGAGAAACATATCTCGTGTGCGCAGTTATTATGTGAGGGCTCATATGTAGAATTTTCACATGAACCATTAAAGCACTTCATTTAAATATGGCCCATATATCTTTTATTGTGGCGCACCCCAAAAGGTTAAACCAATTCAGCACCGTTATACTGCATTCAAACAAAGGAAACCATTAAACCAAATTGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTAATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT]
[-] EMBL AW330554 [AGTTTTAAACAGCGACACTAAGAATCTCAAAAAATAAACATTTGAGAGAAACATATCTCGTGTGCGCAGTTATTATGTGAGGGCTCATATGTAGAATTTTCACATGAACCATTAAAGCACTTCATTTAAATATGGCCCATATATCTTTTATTGTGGCGCACCCCAAAAGGTTAAACCAATTCAGCACCGTTATACTGCATTCAAACAAAGGAAACCATTAAACCAAATTGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTAATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9738#0 GGCCAGAATTTGGCACGAGGTTCATGTATGTTACTGATGGTGATCTAGTTGCTGAACGGC 60
consensus_9738#2 ------------------------------------------------------------
consensus_9738#1 ------------------------------------------------------------
consensus_9738#0 ATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGA 120
consensus_9738#2 ------------------------------------------------------------
consensus_9738#1 ------------------------------------------------------------
consensus_9738#0 TCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCAT 180
consensus_9738#2 ------------------------------------------------------------
consensus_9738#1 ------------------------------------------------------------
consensus_9738#0 TAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTA 240
consensus_9738#2 ------------------------------------------------------------
consensus_9738#1 ------------------------------------------------------------
consensus_9738#0 CTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAG 300
consensus_9738#2 ------------------------------------------------------------
consensus_9738#1 ------------------------------------------------------------
consensus_9738#0 CTGAATATGATATTACTGAACATGTTCGTGAACTGATAGGTGATTTAAAAGAATTTAAAC 360
consensus_9738#2 --------------------------------------------------AGTTTTAAAC 10
consensus_9738#1 -------------------------GTATTTTCGAATATAAGAAATCATAAATTTCAGAT 35
** * *
consensus_9738#0 AACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATC 420
consensus_9738#2 AGC--GACACTAA--GAATCTCAAA------AAATAAACATTTGAGAGAAACATATC-TC 59
consensus_9738#1 TCG--AAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTG 93
* * ** **** ** * ** ** ***** *
consensus_9738#0 GTGTATGGCAAGTAGTTA-------TATTAAATGGATCATATTGTATGAA--TTTTTCAC 471
consensus_9738#2 GTGTGCGC--AGTTATTA-------TGT--GAGGGCTCATAT---GTAGA--ATTTTCAC 103
consensus_9738#1 ATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTA-GTTGATTATTGTAAG 152
*** * * * * * ** ** * * ** * *
consensus_9738#0 ATGAACCATTTAAAGCAC--TTCATTTTAAATATGGACCATATATCTTTTTATTATGGCG 529
consensus_9738#2 ATGAACCATT-AAAGCAC--TTCATTT-AAATATGGCCCATATATCTTTT-ATTGTGGCG 158
consensus_9738#1 AAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAA 212
* *** ** * ** * * * **** * ** ** **
consensus_9738#0 TACACCAAAAGGTTAA---AACAATTTAGCAA--CGTTATACTACAATCAAACAAAAGAA 584
consensus_9738#2 CACCCCAAAAGGTTAA---ACCAATTCAGCAC--CGTTATACTGCATTCAAACAAAGGAA 213
consensus_9738#1 GATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATG 272
* *** * ** * **** *** * *** * * **** ** *
consensus_9738#0 AACATTAAAACAAAATGGATTGA-AACATTAAT-----CTTAGTGTTGAA--TATCAATT 636
consensus_9738#2 ACCATTAAACCAAATTGGATTGA-AACATTAAT-----CTTAGTGTTGAA--TATCAATT 265
consensus_9738#1 TGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAA 332
** ** * * * ** ***** * * ** * ****
consensus_9738#0 AGTTT---ATTTATTATGTCCAACTTTGAGT----TATTTGATGTTGTATTGCAAAGAAA 689
consensus_9738#2 AGTTT---ATTTATTATGTCCAACTTTGAGT----AATTTGATGTTGTATTGCAAAGAAA 318
consensus_9738#1 GATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGA-ACA 391
*** * ***** * ** ** * * ** * **** * * * *
consensus_9738#0 TATACCCAAATACATATACATGT---- 712
consensus_9738#2 TATACCCAAATACATATACATGT---- 341
consensus_9738#1 TGTTCGTGAACTGATAGGTGATTTAAA 418
* * * ** *** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||