These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1225 fasta sequence [AGAAAGAAGACATATGCCATCATTCGTGCAGTATACAATCATAGCCACTCTCCTGAAGACTTTGAACGTGAATTGGATTTTGTACTAAGTCGTAAAGTATGTATGGTCATTATTGAACCAGAATCTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCCTTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTGGAATGAGCAACGGTGAAAGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATAT--GATTGTTAGTAATCCTTAATTTTGTTATATCCTTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCTTCACCCGACATATGTGAAGAACAATCTCTTCCTTTTAGATTTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD078365 [AGAAAGAAGACATATGCCATCATTCGTGCAGTATACAATCATAGCCACTCTCCTGAAGACTTTGAACGTGAATTGGATTTTGTACTAAGTCGTAAAGTATGTATGGTCATTATTGAACCAGAATCTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCCTTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTGGAATGAGCAACGGTGAAAGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTA ] [+] EMBL CD078821 [ AGACTTTGAACGTGAATTGGATTTTGTACTAAGTCGTAAAGTATGTATGGTCATTATTGAACCAGAATCTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCCTTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTGGAATGAGCAACGGTGAAAGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCANACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATG ] [+] EMBL CD187106 [ CTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCCTTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTG ] [-] EMBL BG932536 [ gtattgtGATGGACGCG GGGAGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACCCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATC ] [+] EMBL BG932442 [ gAGTGGAATGAGCAACGGTGAAAGCCCCAATGGTTGTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGACGACGAAAAGTACTGCATAATACCGTCTCTCTA ] [+] EMBL CD142630 [ AAAGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGGAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATATNNGA TG TAGTAATCCTTAATTNTG TATATCNCTGTCTGCCGTAGTCTGTCTGTTTTC TAACCTCC TCACCCGACATATGT ] [+] EMBL BG932565 [ AGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGACGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATAT GATTGTTAGTAATCCTTAATTTTGTTATATCCTTGTCCGCCGTAGTCTGTCTGTTTTCTTAACCTCCT ] [-] EMBL CD072924 [ GTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTNCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATAT GATTGTTAGTAATCCTTAATTTTGTTATATCCTTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCTTCACCCGACATATGTGAAGAACAATCTCTTCCTTTTAGATTTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAA ] [-] EMBL CD073281 [ ATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATAT GATTGTTAGTAATCCTTAATTTTGTTATATCCTTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCTTCACCCGACATATGTGAAGAACAATCTCTTCCTTTTAGATTTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAA ] [-] EMBL AI395766 [ TGTCTGCCGTAGTCTGCCTGTTTTCTTAACCTCCTTCACCCGACATATGTGAAGAACAATCTCTTCCTTTTAGA TTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGGTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [TATCCCGTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCCTTCACCCGACATATGTGAAGAACAATCTCTTCTATTTAGATCTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGTTTCTTAGTTTTTATGGACTACCTGAAAAAATCTAATGTTCAATCATCAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI395259 [TATCCCGTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCCTTCACCCGACATATGTGAAGAACAATCTCTTCTATTTAGATCTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGTTTCTTAGTTTTTATGGACTACCTGAAAAAATCTAATGTTCAATCATCAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9741#0 AGAAAGAAGACATATGCCATCATTCGTGCAGTATACAATCATAGCCACTCTCCTGAAGAC 60 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 TTTGAACGTGAATTGGATTTTGTACTAAGTCGTAAAGTATGTATGGTCATTATTGAACCA 120 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 GAATCTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACA 180 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 GCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCC 240 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 ACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGA 300 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 ACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCT 360 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 GCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCA 420 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 CAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCC 480 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 TTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTGGAATGAGCAACGGTGAAAGC 540 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 CCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATT 600 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 GCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGA 660 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 GATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCT 720 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 TGTTATATTCTTTTTAGATGGTCTAGACATTGAAATATGATTGTTAGTAATCCTTAATTT 780 consensus_9741#1 ------------------------------------------------------------ consensus_9741#0 TGTTATATCCT-TGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCC-TTCACCCGACATA 838 consensus_9741#1 -----TATCCCGTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCCTTCACCCGACATA 55 ***** ********************************** ************* consensus_9741#0 TGTGAAGAACAATCTCTTCCTTTTAGATTTATTTTTTTCCTAAAACCTGCGTTACAGTAT 898 consensus_9741#1 TGTGAAGAACAATCTCTTCTATTTAGATCTATTTTTTTCCTAAAACCTGCGTTACAGTAT 115 ******************* ******* ******************************* consensus_9741#0 CCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTT 958 consensus_9741#1 CCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTT 175 ************************************************************ consensus_9741#0 ACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGAT 1018 consensus_9741#1 ACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGAT 235 ************************************************************ consensus_9741#0 AACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTA 1078 consensus_9741#1 AACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTA 295 ************************************************************ consensus_9741#0 AGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAA 1138 consensus_9741#1 AGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAA 355 ************************************************************ consensus_9741#0 ATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTG------- 1191 consensus_9741#1 ATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGTTTCTTA 415 ***************************************************** consensus_9741#0 -----------------AAAAAAAAAAAA------------AAAAAAAAAAAAAAAAAAA 1222 consensus_9741#1 GTTTTTATGGACTACCTGAAAAAATCTAATGTTCAATCATCAAAAAAAAAAAAAAAAAAA 475 ****** ** ******************* consensus_9741#0 AAA 1225 consensus_9741#1 AAA 478 *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||