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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 955 fasta sequence
[GGACGGAAGTTGAAATTCAACAATATGAATATCTACCTTATTGGTATATTATGTATTGTGGGTTTGATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAAAAACGTTGATATCCGCATAATTGGAAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATATTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAG-AAGACG-ATG-ATACTTTAG-AACTCAACT-TGCCAAAATACTATTACGACAAATCAATAT-G-AAAATGGTTTTCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTT-GAAACTCAAATAATTAGCATAACTTAAT-GTTT-GTTTTAATCTGATATAAATTTTCAAC-ATTTGCATAAAATTATAAATAAAAACAAC]
[+] EMBL SMANTIH [GGACGGAAGTTGAAATTCAACAATATGAATATCTACCTTATTGGTATATTATGTATTGTGGGTTTGATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAAAAACGTTGATATCCGCATAATTGGAAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATATTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAG AAGACG ATG ATACTTTAG AACTCAACT TGCCAAAATACTATTACGACAAATCAATAT G AAAATGGTTTTCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTT GAAACTCAAATAATTAGCATAACTTAAT GTTT GTTTTAATCTGATATAAATTTTCAAC ATTTGCATAAAATTATAAATAAAAACAA ]
[+] EMBL BG931654 [ GTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGAC ]
[-] EMBL BF440151 [ AAATCAACTATACTATATGGTCGAGAAGATTGAGCAAATTATGGAAAATTTACTAG AAGACG ATG ATACATTAG AACTCAACT TGCCAAAATACTATTACGACAAATCAATATAA AAAATGGTTATCAATACTTGGAAAAAGTACATAGAAACGTCAACTCATAACTT GAAACTCAAATAATTAGCATAACTTAAT GTTT GTATTAATCTGATATAAATTTTCAAC ATTAGCAAAAAATTATAAATAAAAACAAC]
[+] EMBL SM636 [ TTACTAGNAGGACGAATGNATACTTTAGNAACTCAACTNGGCCAAAATACTATTACGACAAATCANTAT GAAAAATGGTTTTCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGGAAACTCAAATAATTAGCATAACTTAATGGTTTGGTTTTAATCTGATATAAATTCTCAACAATTTGCATAAAATTATAAATAA ]
consensusID : consensus_9745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 664 fasta sequence
[GTTTAATTGGAATCTTCAGTTTGCTTATTTCACAAGAATATGGTTATTTGATTGATATAAAACATATAAACAGTCCAAATCAAAAACAATATGTAAGAGACAAAATGAATTTATTGAATGAATATTTAACTTCAAGAAATATCAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGCATATCGAAGACAAAAACGTTGATATCCGCATAATTGAAAATAAGAAGGATAAACACCCTACTCAGAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTANTTACGAC-AATCAATATGAAAATGGTTTCCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGAAACTCANNAT-ATTAGCATAACTTAATGTTTGTTNTAATCTGATATAAATNTTCAACATTTGCATAAATTTATANNATAAACANAAC]
[+] EMBL CD082523 [GTTTAATTGGAATCTTCAGTTTGCTTATTTCACAAGAATATGGTTATTTGATTGATATAAAACATATAAACAGTCCAAATCAAAAACAATATGTAAGAGACAAAATGAATTTATTGAATGAATATTTAACTTCAAGAAATATCAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGCATATCGAAGACAAAAACGTTGATATCCGCATAATTGAAAATAAGAAGGATAAACACCCTACTCAGAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTANTTACGAC AATCAATATGAAAATGGTTTCCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGAAACTCANNAT ATTAGCATAACTTAATGTTTGTTNTAATCTGATATAAATNTTCAACATTTGCATAAATTTATANNATAAACAN ]
[-] EMBL CD076118 [ CAAGAAATATCAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGCATATCGAAGACAAAAACGTTGATATCCGCATAATTGAAAATAAGAAGGATAAACACCCTACTCAGAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTA TTACGACAAATCAATATGAAAATGGTTTCCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGAAACTCA AATAATTAGCATAACTTAATGTTTGTTTTAATCTGATATAAATTTTCAACATTTGCATAAAATTATA AATAAAAACAAC]
[+] EMBL CD199867 [ AAGAACAACTCCCAAACCTACAACACCAGAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATA ]
consensusID : consensus_9745#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 606 fasta sequence
[GAAATTCAACAATATGAATATCTACCTTATTGGTATATTATGTATTGTGGGTTTNATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATATTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTATTACGACAA]
[+] EMBL SMT14386 [GAAATTCAACAATATGAATATCTACCTTATTGGTATATTATGTATTGTGGGTTTNATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACANTTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAATAAGANGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCA ]
[+] EMBL AY256907 [ TACCTTATTGGTATATTATGTATTGTGGGTTTGATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACGATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGGAGTATATCGAAGACAATAAGAAGGATAAACACCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAGTCCATAGCCGATATTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATCCTCTATACTATATGGTCGAGAAGTTTGTGCAAATTATGGGATATTTACTAGAAGACGATGATACTTTAGAACTCAACTTGCCAAAATACTATTACGACAA]
[-] EMBL CD166648 [ TACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCAGACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGGACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACC AAGCTAAT AATGATGGtcgt ]
consensusID : consensus_9745#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence
[GGGTATTTACTAGGAGCGNANNACNNNNNNCTCACTGCCAATACTATTACGCAATCAATATGAAAATCGGTTTTCAATACTTGGCAAAAGTACATAGTAACGTCAACTCATAACTTGAACTCAATATTAGCATAACTTAATGTTTGCAGTTAATCTGATATAACTTCAACATTTCGATAAATATAATCAAC]
[+] EMBL AA804144 [GGGTATTTACTAGGAGCGNANNACNNNNNNCTCACTGCCAATACTATTACGCAATCAATATGAAAATCGGTTTTCAATACTTGGCAAAAGTACATAGTAACGTCAACTCATAACTTGAACTCAATATTAGCATAACTTAATGTTTGCAGTTAATCTGATATAACTTCAACATTTCGATAAATATAATCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9745#1 GTTTAATTGGAATCTTCAGTTTGCTTATTTCACAAGAATATGGTTATTTGATTGATATAA 60
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 -----------GGACGGAAGTTGAAATTCAACAATATGAATATCTACCTTATTGGTATAT 49
consensus_9745#2 ----------------------GAAATTCAACAATATGAATATCTACCTTATTGGTATAT 38
consensus_9745#1 AACATATAAACAGTCCAAATCAAAAACAATATGTAAGAGACAAAATGAATTTATTGAATG 120
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 TATGTATTGTGGGTTTGATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACG 109
consensus_9745#2 TATGTATTGTGGGTTTNATTATTTCACAAGGGTCTACTGCTAACGGAAGTCCACTTGACG 98
consensus_9745#1 AATATTTAACTTCAAGAAATATCA------AGAAACAATTCACCGAAGAGGAATTTTCCA 174
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 ATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCA 169
consensus_9745#2 ATCGATTCAATGATGTTAATACCATAAACAAGAAACAATTCACCGAAGAGGAATTTTCCA 158
consensus_9745#1 GACTGATAAATTCCATGTTAAAGAAGCATATCGAAGACAAAAACGTTGATATCCGCATAA 234
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 GACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAAAAACGTTGATATCCGCATAA 229
consensus_9745#2 GACTGATAAATTCCATGTTAAAGAAGTATATCGAAGACAA-------------------- 198
consensus_9745#1 TTGAAAATAAGAAGGATAAACACCCTACTCAGAAAACCAGTGATACCCACACAATTAAAA 294
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 TTGGAAATAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAA 289
consensus_9745#2 -------TAAGAAGGATAAACAGCCTACTCAGAAAACAACTCCCAAACCTACAACACCAA 251
consensus_9745#1 GAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTA 354
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 AGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAAC-A 348
consensus_9745#2 AGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAAC-A 310
consensus_9745#1 AGTCCATAGCCGATTTTTTCTTAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATC 414
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 ACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGAT 408
consensus_9745#2 ACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGAT 370
consensus_9745#1 CTCTATACTATATGGTCGAGAAGTTT-GTGCAAATTATGGGATATTTACTAGAAGA--CG 471
consensus_9745#3 ---------------------------------------GGGTATTTACTAGGAGC--GN 19
consensus_9745#0 ACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGA 468
consensus_9745#2 ACCCACACAATTAAAAGAACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGA 430
* * ** *
consensus_9745#1 ATGATACTTTAGAA---------------------------------------------- 485
consensus_9745#3 ANNACNNNNNN------------------------------------------------- 30
consensus_9745#0 ACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGAACAACTCCCAAACCTACAACA 528
consensus_9745#2 ACGTCAGACAAA------------------------------------------------ 442
*
consensus_9745#1 ------------------------------------------------------------
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 CCAAAGCAAATAAATGATGGAACGTCAGACAAAACCAGTGATACCCACACAATTAAAAGA 588
consensus_9745#2 ------------------------------------------------------------
consensus_9745#1 ------------------------------------------------------CTCAAC 491
consensus_9745#3 ------------------------------------------------------CTCA-- 34
consensus_9745#0 ACAACTCCCAAACCTACAACACCAAAGCAAATAAATGATGGAACGTCAGACAAACCTAAG 648
consensus_9745#2 ------------------------------------------------------CCTAAG 448
* *
consensus_9745#1 TTGCCAAAATACTANTTACGACAATCAATATGAAAAT-GGTTTCCAATACTTGGAAAAAG 550
consensus_9745#3 CTGCCAA--TACTATT-ACG-CAATCAATATGAAAATCGGTTTTCAATACTTGGCAAAAG 90
consensus_9745#0 TCCATAGC-CGATATTTTCT-TAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATC 706
consensus_9745#2 TCCATAGC-CGATATTTTCT-TAATCAATAAGCCAAAGGTTCCTTTGTGGATTGTAAATC 506
* ** * * ******** * ** * * * * * ***
consensus_9745#1 TACATAGTAACGTCAACTCATAACTTGAAACTCANNATATTAGCATAACTTAATGTTTGT 610
consensus_9745#3 TACATAGTAACGTCAACTCATAACTTGAA---CTCAATATTAGCATAACTTAATGTTTGC 147
consensus_9745#0 CTCTATACTATATGGTCGAGAAGTTTGTG----CAAATTATGGGATA-TTTACTAGAAGA 761
consensus_9745#2 CTCTATACTATATGGTCGAGAAGTTTGTG----CAAATTATGGGATA-TTTACTAGAAGA 561
* * * * * *** ** * * *** *** * *
consensus_9745#1 TNT-AATCTGATATAAATNTTCAACATTTGCATAAATTTATANNATAAACANAAC----- 664
consensus_9745#3 AGTTAATCTGATATAA--CTTCAACATTTCGATAAATATAATCAAC-------------- 191
consensus_9745#0 CGATGATACTTTAGAA---CTCAACTTGCCAAAATACTATTACGACAAATCAATATGAAA 818
consensus_9745#2 CGATGATACTTTAGAA---CTCAACTTGCCAAAATACTATTACGACAA------------ 606
** ** ** ***** * * * * *
consensus_9745#1 ------------------------------------------------------------
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 ATGGTTTTCAATACTTGGAAAAAGTACATAGTAACGTCAACTCATAACTTGAAACTCAAA 878
consensus_9745#2 ------------------------------------------------------------
consensus_9745#1 ------------------------------------------------------------
consensus_9745#3 ------------------------------------------------------------
consensus_9745#0 TAATTAGCATAACTTAATGTTTGTTTTAATCTGATATAAATTTTCAACATTTGCATAAAA 938
consensus_9745#2 ------------------------------------------------------------
consensus_9745#1 -----------------
consensus_9745#3 -----------------
consensus_9745#0 TTATAAATAAAAACAAC 955
consensus_9745#2 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||