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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1103 fasta sequence
[CCAANAATTCGGCACGAGGGCGGCACGAGGGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTTGAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGCTTTTATTATTACATATTTCACTATTTTAAGTGGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCATCATCAGAAATTTTTTTGGAAACAAGACGTGAAAGCATAAAATTAGGATCACC-TACAACAAATAGTTCATCTAATCAATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATATTAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGATATTAAACAAGATCCA-TCAACGACTATATCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAG-AGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACAC------ATAATAATAATAATAATCATGAAATTG-ATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTTTAACTCATGAATCTACAGAAGCTGATGCTGTTGATGAATATCTAAAAAATACTAGTGCAGATGAACGTGATCGATTAAGAAAACATGTAATCATTACACATGCTTATTCAAAAATTGATGATCATATTG]
[+] EMBL CD082298 [CCAANAATTCGGCACGAGGGCGGCACGAGGGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTTGAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGCTTTTATTATTACATATTTCACTATTTTAAGTGGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCATCATCAGAAATTTTTTTGGAAACAAGACGTGAAAGCATAAAATTAGGATCACC TACAACAAATAGTTCATCTAATCAATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATATTAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGATATTAAACAAGATCCANTC ACGACTATATCACATCATAATT ]
[+] EMBL AI976788 [ TTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCATCATCAGAAATTTTTTTGGAAACAAGACGTGAAAGTATAAAATTAGGATCACC TACAACAAATAGTTCATCTAATCAATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATATTAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGATATTAAACAAGATCCA TCAACGACTATATCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAG AGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACAC ATAATAATAATAATCATGAAATTG ATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTATAACTCATGAATCTACAGAAGCTGATGCTGTTG ]
[-] EMBL CD075902 [ CACCNTACAACAAATAGTTCATCTAATCAATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATATTAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGATATTAAACAAGATCCA TCAACGACTATATCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAG AGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATAATAATAATAATAATCATGAAATTG ATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTTTAACTCATGAATCTACAGAAGCTGATGCTGTTGATGAATATCTAAAAAATACTAGTGCAGATGAACGTGATCGATTAAGAAAACATGTAATCATTACACATGCTTATTCAAAAATTGATGATCATATTG]
[+] EMBL SMAA14059 [ TGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAAGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACAC ATAATAATAATAATAATCATGAAATTGAATAATTATAATAATATAAA ]
[+] EMBL SMAA69066 [ AAAATGGTACCGTTCCTACTTCATATAATTATAATAAAG AGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACAC ATAATAATAATAATAATCATGAAATTG ATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATNACAATTAGTTATGCTTTAACTCATGAA ]
consensusID : consensus_9750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 526 fasta sequence
[ATCTATTGGAAAAGTTTTAAATTACTTATATATAGTTGACCATGGTG-AAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTT-GAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGCGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGC-TTTTATTAATACATATTTCACTATTTTAAGT-GGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCA]
[+] EMBL SM613 [ATCTATTGGAAAAGTTTTAAATNACTTATATATAGNTGACCATGGTGAAAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGCCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTTGGAGCTTCAGAAACCAGGTGAAGAGTTACGTTTAAGCAACCTCAAGGCTGGCGCAAAGTTCATNCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCANACAATCATGAATCTGCAGCTTTTTATTATTACATATTCCACTATTTNANGTGGGACTACCTGTAGCATTANCTCGAAAAGCTGTTATGAAATG ]
[+] EMBL CD168389 [ ATTGGAAAAGTTTTAAATTACTTATATATAGTTGACCATGGTG AAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTT GAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGC TTTTATTAATACATATTTCACTATTCTAAGT GGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGA ]
[+] EMBL CD168376 [ ATTGGAAAAGTTTTAAATTACTTATATATAGTTGACCATGGTG AAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTT GAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGC TTTTATTAATACATATTT ]
[+] EMBL AI975265 [ AAGTTTTAAATTACTTATATATAGTTGACCATGGTG AAGCAACAACTGATTCTAATCTCAAGAAAGCTAAGATTACGTGCATGTTATCGTCAACCCAAAAACCTCCGAAACCTAACCCTCACTGGAAACACCTT GAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAACCTCAAGGCTGGCGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGC TTTTATTATTACATATTTCACTATTTTAAGT GGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCA]
[+] EMBL CD168390 [ TGGGATAATTGAACCAAACAATCATGAATCTGCAGC TTTTATTAATACATATTTCACTATTCTAAGT GGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGAATTACGTGATGAATTATTCAAA ]
consensusID : consensus_9750#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[AAGGCGACTCCTAGAGGATCCCCGACGCATTCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAGACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATAATAATCATGAAATTGATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTATAACTCATGAATCTACAGAAGCTGATGCTGTTGATGAATATTTAAAAAATACTAGTGCAGATGAACGTGATCGATTAAGAAAACATGTAATCATTACACATGCTTATTCAAAAATTGATGATCATATTGATCAGATATAAAAAAAAAAAATGGATAAT]
[+] EMBL CD166800 [AAGGCGACTCCTAGAGGATCCCCGACGCATTCACATCATAATTATCATTCAACAGATCATAATAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATAATAATAGTAGACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAGATTGGTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATAATAATCATGAAATTGATAATTATAATAATATAAATAAATTAAAATCGTCTAAAATAACAATTAGTTATGCTATAACTCATGAATCTACAGAAGCTGATGCTGTTGATGAATATTTAAAAAATACTAGTGCAGATGAACGTGATCGATTAAGAAAACATGTAATCATTACACATGCTTATTCAAAAATTGATGATCATATTGATCAGATATAAAAAAAAAAAATGGATAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9750#0 CCAANAATTCGGCACGAGGGCGGCACGAGGGTTATCGTCAACCCAAAAACCTCCGAAACC 60
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TAACCCTCACTGGAAACACCTTGAGCTTCAGAAACCAGGTGAAGAGTTACGTATAAGCAA 120
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 CCTCAAGGCTGGTGCAAAGTTCATTCACGAATCCAGATGTAGTCGGGAAAATATTGCTGT 180
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 GATAATTGAACCAAACAATCATGAATCTGCAGCTTTTATTATTACATATTTCACTATTTT 240
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 AAGTGGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAATGTAGAGAAAAATTAGA 300
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAATCGACTACACCAAAAGA 360
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 ATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAAGATAGATTAATTGAAGA 420
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCATCATCAGAAATTTTTTT 480
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 GGAAACAAGACGTGAAAGCATAAAATTAGGATCACCTACAACAAATAGTTCATCTAATCA 540
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 ATTATTTAAACGTTTATCCATTGATATAAATAAAAAAGAATCAATTAATGAGAAAAATAT 600
consensus_9750#2 ------------------------------------------------------------
consensus_9750#1 ------------------------------------------------------------
consensus_9750#0 TAGTTCACCTAATCTAAATGATAAAACATCAGAACTAGTTGTAAATGAATCTGATCATGA 660
consensus_9750#2 -----------------------------------------------------AAGGCGA 7
consensus_9750#1 -----------------------------------------------------------A 1
*
consensus_9750#0 TATTAAACAAGATCCATCAACGACTATATCACATCATAATTATCATTCAACAGATCATAA 720
consensus_9750#2 C-TCCTAGAGGATCC-CCGACGCAT---TCACATCATAATTATCATTCAACAGATCATAA 62
consensus_9750#1 TCTATTGGAAAAGTT-TTAAATTAC---TTATAT-ATAGTTGACCATGGTGAAGCAACAA 56
* * * * * * ** *** ** * * * * **
consensus_9750#0 -TAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATA 779
consensus_9750#2 -TAATTCTATATTAAATGATATGAAACATGATCTACATCAAGTGGATCAAATCAATAATA 121
consensus_9750#1 CTGATTCTA-ATCTCAAGAAAGCTAAGATTACGTGCATGTTATCG-TCAACCCAAAAACC 114
* ****** ** * ** * ** ** * * *** * * **** *** **
consensus_9750#0 ATAATAGTAAACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAGATTG 839
consensus_9750#2 ATAATAGTAGACTTCAAAATGGTACCGTTCCTACTTCATATAATTATAATAAAGAGATTG 181
consensus_9750#1 TCCGAAACCTAACCCTCACTGGAAACACCTTGAGCTTCAGAAACCA-GGTGAAGAGTTAC 173
* * * * *** * * * * ** * * ***** *
consensus_9750#0 GTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATA 899
consensus_9750#2 GTGGTACAAAATCACCAAATCAATTACATAATACTGATATGAATACTACACATAATAATA 241
consensus_9750#1 GTA-TAAGCAACC-TCAAGGCTGGCGCAAAGTTCATTCACGAAT-CCAGATGTAGTCGGG 230
** ** ** * *** * ** * * * * **** * * * ** *
consensus_9750#0 ATAATAATCATGAAATTGATAATTATAATAA-TATAAATAAATTAAAATCGTCTAA-AAT 957
consensus_9750#2 ATAAT---CATGAAATTGATAATTATAATAA-TATAAATAAATTAAAATCGTCTAA-AAT 296
consensus_9750#1 AAAAT----ATTGCTGTGATAATTGAACCAAACAATCATGAATCTGCAGCTTTTATTAAT 286
* *** ** ******** * ** * ** *** * * * ** ***
consensus_9750#0 A-ACAATTAGTTATGCTT-------TAACTCATGAATCTAC---AGAAGCTG--ATGCTG 1004
consensus_9750#2 A-ACAATTAGTTATGCTA-------TAACTCATGAATCTAC---AGAAGCTG--ATGCTG 343
consensus_9750#1 ACATATTTCACTATTTTAAGTGGACTACCTGTAGCATTAACTCGAAAAGCTGTTATGAAA 346
* * * ** *** * ** ** * ** ** * ****** ***
consensus_9750#0 T-TGATGAATATCTAAAAAATACTAGTGCAGATGAACGT-------GATCGATTAAGAAA 1056
consensus_9750#2 T-TGATGAATATTTAAAAAATACTAGTGCAGATGAACGT-------GATCGATTAAGAAA 395
consensus_9750#1 TGTAGAGAAAAATTAGATATTACTAATGAATATGATCCTTTAATTGAATCAATGCAAAAA 406
* * *** * ** * * ***** ** * **** * * *** ** * ***
consensus_9750#0 ACATGTA-ATCATTACACATGCTTATTCAAAAATTGATGATCATAT-TG----------- 1103
consensus_9750#2 ACATGTA-ATCATTACACATGCTTATTCAAAAATTGATGATCATAT-TGATCAGATATAA 453
consensus_9750#1 TCGACTACACCAAAAGAATTACGTGATGAATTATTCAAAGGTACATCTGGTTATACAGAA 466
* ** * ** * * * * * * ** *** * * ** **
consensus_9750#0 ------------------------------------------------------------
consensus_9750#2 AAAAAAAAAATGGATAAT------------------------------------------ 471
consensus_9750#1 GATAGATTAATTGAAGATTTACGTAAAATTTATCAATTAGCTGAATTAGATCCACCATCA 526
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||