These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 883 fasta sequence [AATAATGACATGATCACAACTTATGCCTCAAATTCTAAATATCGACGGTCTTCTGTTTACAGGTTTTACATTCAAGGTAACCAGTTTGATATATCCAAATGGAAAGATAGCGTTCTATTATGATGAAGTTGCTAAGGAATTTCAGAAAGATGACGTGTATTCGTTGTTTAGTGGTGTGTTTACGTGTGGCGAAAATAGAGATGATGAATGGGCCGAAGTAGAAGTTCCTAAAAAATGGATCCAA-AGTGGCACGTTGGTGGAGCATGAAGTTCTCGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCAGTGCTAGTAATGACGAGGATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGAGAAACAATCACAGGTATCACTGAACCTGACCTAACAAACGGATTGTCCAAAACTACTCAAACAGCTGAGTCTCATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAGTCAAAGAGTTCCCTGTACATCATTATACCACTTGTTGTCGTTTTCTTCGTTGTATGCATTGGCCTTGCCATTTGTCTGTGGTTATACAGAAGGGAGTAATGCAATCCATGGCTCACAGAAAAGTTTGATCGCTTGCTTTCATCATGCTGACATTGGTATTTTCATCTTGTTTGTAATCACATACGTCTTATATTGTGTAATTCATTTCAATGAGATGGAAACTGTTTCATAGGACTATTTAACACTTTCATAAGTGTTTCCCTTAATAATTGATGTATTTTGTGGTTA] [+] EMBL CD124116 [AATAATGACATGATCACAACTTATGCCTCAAATTCTAAATATCGACGGTCTTCTGTTTACAGGTTTTACATTCAAGGTAACCAGTTTGATATATCCAAATGGAAAGATAGCGTTCTATTATGATGAAGTTGCTAAGGAATTTCAGAAAGATGACGTGTATTCGTTGTTTAGTGGTGTGTTTACGTGTGGCGAAAATAGAGATGATGAATGGGCCGAAGTAGAAGTTCCTAAAAAATGGATCCAA AGTGGCACGTTGGTGGAGCATGAAGTTCTCGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCACTGCTAGTAATGACAAGGATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCGATCAAAGAGAAACAATCACAGGTATCACTGAACCTGACCTAACANACGGATTGTCCAAAACTACTC ] [-] EMBL CD124166 [ ATAATGACATGATCACAACTTATGCCTCAAATTCTAAATATCGACGGTCTTCTGTTTACAGGTTTTACATTCAAGGTAACCAGTTTGATATATCCAAATGGAAAGATAGCGTTCTATTATGATGAAGTTGCTAAGGAATTTCAGAAAGATGACGTGTATTCGTTGTTTAGTGGTGTGTTTACGTGTGGCGAAAATAGAGATGATGAATGGGCCGAAGTAGAAGTTCCTAAAAAATGGATCCAA AGTGGCACGTTGGTGGAGCATGAAGTTCTCGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCACTGCTAGTAATGACAAGGATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGAGAAACAATCACAGGTATCACTAAACCTGACCTAACAAACGGATTGTCCAAAACTACTCA ] [+] EMBL CD114404 [ CAAGAGTGGTACGTTGGGGGAGCATGAAGTTCACGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCACTGTTAGTAATGACGAGGATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTTGATTGAACCAACACTTATCAATCAAAGAGAAACAATCACAGGTATCACTGAACCTGACCTAACAAACGGATTGTCCAAAACTACTCAAACAGCTGAGTCTTATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAGGCAAAGAGTCCCCTG ] [+] EMBL CD114536 [ GGTACGTTGGTGGAGCATGAAGTTCTCGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCAGTGCTAGTAATGACGAGGATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGAGAAACAATCACAGGTATCCCTGAACCTGACCTAACAAACGGATTGTCCAAAACTACTCAAATAGCTGAGTCTCATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAGTCAAAGAGTTCCCTG ] [+] EMBL CD114579 [ AGCATGAAGTTCTCGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCAGTGCTAGTAATGACGAGGATAATCATGAATTCAATATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGAGAAACAATCACAGGTATCACTGAACCTGACCTAACAAACGGATTGTCCAAAACTACTCAAACAGCTGAGTCTCATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAGTCAAAGAGTTCCCTG ] [+] EMBL CD114558 [ AGCATGAAGTTCTCGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCAGTGCTAGTAATGACGAGGATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGAGAAACAATCACAGGTATCCCTGAACCTGACCTAACAAACGGATTGTCCAAAACTACTCAAATAGCTGAGTCTCATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAGTCAAAGAGTTCCCTG ] [+] EMBL CD115812 [ TGAAGTTCTCGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCAGTGCTAGTAATGACGAGGATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGAGAAACAATCACAGGTATCACTGAACCTGACCTAACAAACGGATTGTCCAAAACTACTCAAACAGCTGAGTCTCATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAGTCAAAGAGTTCCCTGTACATCATTATACCACTTGTTGTCGTTTTCTTCGTTGTATGCATTGGCCTTGCCATTTGTCTGTGGTTATACAGAAGGGAGTAATGCAATCCATGGCTCACAGAAAAGTTTGATCGCTTGCTTTCATCATGCTGACATTGGTATTTTCATCTTGTTTGTAATCACATACGTCTTATATTGTGTAATTCATTTCAATGAGATGGAAACTGTTTCATAGGACTATTTAACACTTTCATAAGTGTTTCCCTTAATAATTGATGTATTTTGTGGTTA] [+] EMBL CD154106 [ TGAAGTTCTCGGTGATTGTTCAAAACACAATTCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAATCCGATATATGCAGTGCTAGTAATGACGAGGATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGAGAAACAATCACAGGTATCACTGAACCTGACCTAACAAACGGATTGTCCAAAACTACTCAAACAGCTGAGTCTCATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAGTCAAAGAGTTCCCTGTACATCATTATACCACTTGTTGTCGTTTTCTTCGTTGTATGCATTGGCCTTGCCATTTGTCTGTGGTTATACAGAAGGGAGTAATGCAATCCATGGCTCACAGAAAAGTTTGATCGCTTGCTTTCATCATGCTGACATTGTTATTTTCATCTTGTTTGTAATCACATACGTCTTATATTGTGTAATTCATTTCAATGAGATGGAAACTGTTTCATAGAACTATANTACACTTTCATAAGTG TTCCCTTAATAATTGATGTATTTTGntg ] [-] EMBL CD159395 [ GATAATCATGAATTCAAAATAAATGGTTGCCAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGAAAAACAATCACAGGTATCACTGAACCTGACCTAGCAAACGGATTGTCCAAAACTACTCAAACAGCTGAGTCTCATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAGTCAAAGAGTTCCCTGTACATCATTATACCACTTGTTGTCGTTTTCTTCGTTGTATGCATTGGCCTTGCCATTCGTCTGTGGTTATACAGAAG ] consensusID : consensus_9756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [CGACCAACGTTATCTGTTTTATTTTCCAGCATTCCTGAGATTACTCTGCATGCTCCTTTCGTACTCAAAGTACCTCCTGGCCTGACGCGAACCGCTACACATCGGTCCCCCAGACTTCTAGTTGTAGACGAAGCCTATTTTGATTTATTGGCATCCCCATGTAACTTTATCAATGCCACAAAAGCAACTGTTTGTTTGTGCTTTGTATGATTATAACCGCCAACATACTGACGAGCTTTCATTTAAAAAAGGCGACATACTGAGAGTTTTGAAACAATTAGAAGGTGGTTGGTGGGAAGGTAGCTTGAATGGATTTGTTGGCTGGTTTCCTAGTAACTACGTAACACATGCTACTAGTTTAGATGAGAAGGGTAATCCCACTACTGATGAAAGTTCGTTGATACACTTACAAAACTTTCAAAACGAGATTATACAGCATGTTTTAGAAGGTGAATTAAGACAAGTTAGTGAACTGTCTCAGTTATTGTCAGTATTTACGGTTAACCTGGAGCCTCTACTTCACTTATCATTCTTAAACAAACTCGTCAATTTAAGAGACATATTATTTCANATTATTAGTATACATCAAC] [+] EMBL CD201882 [CGACCAACGTTATCTGTTTTATTTTCCAGCATTCCTGAGATTACTCTGCATGCTCCTTTCGTACTCAAAGTACCTCCTGGCCTGACGCGAACCGCTACACATCGGTCCCCCAGACTTCTAGTTGTAGACGAAGCCTATTTTGATTTATTGGCATCCCCATGTAACTTTATCAATGCCACAAAAGCAACTGTTTGTTTGTGCTTTGTATGATTATAACCGCCAACATACTGACGAGCTTTCATTTAAAAAAGGCGACATACTGAGAGTTTTGAAACAATTAGAAGGTGGTTGGTGGGAAGGTAGCTTGAATGGATTTGTTGGCTGGTTTCCTAGTAACTACGTAACACATGCTACTAGTTTAGATGAGAAGGGTAATCCCACTACTGATGAAAGTTCGTTGATACACTTACAAAACTTTCAAAACGAGATTATACAGCATGTTTTAGAAGGTGAATTAAGACAAGTTAGTGAACTGTCTCAGTTATTGTCAGTATTTACGGTTAACCTGGAGCCTCTACTTCACTTATCATTCTTAAACAAACTCGTCAATTTAAGAGACATATTATTTCANATTATTAGTATACATCAAC] consensusID : consensus_9756#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [ANATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTANTCTATTTCCCGAAAGGTCCTCGATTTCACATAGTCCACNCTATTAANCGTAATTAGTTAGTGAGGTNGGATAAGTCACNGACTTTTTTTTNTTAN] [+] EMBL AA559378 [ANATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTANTCTATTTCCCGAAAGGTCCTCGATTTCACATAGTCCACNCTATTAANCGTAATTAGTTAGTGAGGTNGGATAAGTCACNGACTTTTTTTTNTTAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9756#0 AATAATGACATGATCACAACTTATGCCTCAAATTCTAAATATCGACGGTCTTCTGTTTAC 60 consensus_9756#2 -------------ANATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTA 47 consensus_9756#1 -------CGACCAACGTTATCTGTTTTATTTTCCAGCATTCCTGAGATTACTCTGCATGC 53 * * * * * * * consensus_9756#0 AGGTTTTACATTCAAGGT---AACCAGTTTGATATATCCAAATGGAAAGATAGCGTTCTA 117 consensus_9756#2 NTCTATTTCCCGAAAGGT---CCTCGATTTCACATAGTC--------------CACNCTA 90 consensus_9756#1 TCCTTTCGTACTCAAAGTACCTCCTGGCCTGACGCGAACCGCT----ACACATCGGTCCC 109 * * ** ** * * * * * consensus_9756#0 TTATGATGAAGTTGCTAAGGAATTTCAGAA--AGATGACGTGTATTCGTTGTTTAGTGGT 175 consensus_9756#2 TTA-ANCGTAATTAGTTAGTGAGGTNGGAT--AAGTCACNGACTTTTTTTTNTTAN---- 143 consensus_9756#1 CCAGACTTCTAGTTGTAGACGAAGCCTATTTTGATTTATTGGCATCCCCATGTAACTTTA 169 * * * * * * * * * consensus_9756#0 GTGTTTACGTGTGGCGAAAATAGAGATGATGAATGGGCCGAAGTAGAAGTTCCTAAAAAA 235 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 TCAATGCCACAAAAGCAACTGTTTGTTTGTGCTTTGTATGATTATAACCGCCAACATACT 229 consensus_9756#0 TGGATCCAAAGTGGCACGTTGGTGGAGCATGAAGTTCTCGGTGATTGTTCAAAACACAAT 295 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 GACGAGCTTTCATTTAAAAAAGGCGACATACTGAGAGTTTTGAAACAATTAGAAGGTGGT 289 consensus_9756#0 TCGATTAACACATGTGAAGATGCAAAAACACCAGACAAAACGTGTATTTGGTGCGAAAAA 355 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 TGGTGGGAAGGTAGCTTGAATGGATTTGTTGGCTGGTTTCCTAGTAACTACGTAACACAT 349 consensus_9756#0 TCCGATATATGCAGTGCTAGTAATGACGAGGATAATCATGAATTCAAAATAAATGGTTGC 415 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 GCTACTAGTTTAGATGAGAAGGGTAATCCCACTACTGATGAAAGTTCGTTGATACACTTA 409 consensus_9756#0 CAGGTTGAAAGTAGCTCGATTGTCGACGCTTCGATTGAACCAACACTTATCAATCAAAGA 475 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 CAAAACTTTCAAAACGAGATTATACA-GCATGTTTTAGAAGGTGAATTAAGACAAGTTAG 468 consensus_9756#0 GAAACAATCACAGGTATCACTGAACCTGACCTAACAAACGGATTGTCCAAAACTACTCAA 535 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 TGAACTGTCTCAGTTATTGTCAGTATTTACGGTTAACCTGGAGCCTCTACTTCACTTATC 528 consensus_9756#0 ACAGCTGAGTCTCATTCGAATAAGACTACAGGAACAACTGAAAATAGAGAACAAAGAGAG 595 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 ATTCTTAAACAAACTCGTCAATTTAAGAGACATATTATTTCANATTATTAGTATACATCA 588 consensus_9756#0 TCAAAGAGTTCCCTGTACATCATTATACCACTTGTTGTCGTTTTCTTCGTTGTATGCATT 655 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 AC---------------------------------------------------------- 590 consensus_9756#0 GGCCTTGCCATTTGTCTGTGGTTATACAGAAGGGAGTAATGCAATCCATGGCTCACAGAA 715 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 ------------------------------------------------------------ consensus_9756#0 AAGTTTGATCGCTTGCTTTCATCATGCTGACATTGGTATTTTCATCTTGTTTGTAATCAC 775 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 ------------------------------------------------------------ consensus_9756#0 ATACGTCTTATATTGTGTAATTCATTTCAATGAGATGGAAACTGTTTCATAGGACTATTT 835 consensus_9756#2 ------------------------------------------------------------ consensus_9756#1 ------------------------------------------------------------ consensus_9756#0 AACACTTTCATAAGTGTTTCCCTTAATAATTGATGTATTTTGTGGTTA 883 consensus_9756#2 ------------------------------------------------ consensus_9756#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||