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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 997 fasta sequence
[TTTTACTCTTGTGATTTGTTGCATGGTGTCTAAAGTGTCAATCAATGAACAGTATGGCCACCGAAATAAATTACAGCAACCCGTTTGACTGTGTTGAGGTTTCCCGGGCGAGATATAAGCAGCTAAGGGACCGTCAATTAAGGCGACGTCGGGTTATTTTACGACATCTACTGAAGAACAGTTCATTTTCATTAAGGTTAGAAAACAACAACCAACTCAGCCTAACTCTGTCAGATTTACTTGGTTACCGCAAACCTTCCTACCTACAGTTTGACGAGAACGTTTGTAGGAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATTACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACACCTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAATTCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTATTTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTCCACGTGCATTTGTTTGGATATGGTGTGGGTCAGCGCA]
[+] EMBL AI974987 [TTTTACTCTTGTGATTTGTTGCATGGTGTCTAAAGTGTCAATCAATGAACAGTATGGCCACCGAAATAAATTACAGCAACCCGTTTGACTGTGTTGAGGTTTCCCGGGCGAGATATAAGCAGCTAAGGGACCGTCAATTAAGGCGACGTCGGGTTATTTTACGACATCTACTGAAGAACAGTTCATTTTCATTAAGGTTAGAAAACAACAACCAACTCAGCCTAACTCTGTCAGATTTACTTGGTTACCGCAAACCTTCCTACCTACAGTTTGACGAGAACGTTTGTAGGAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGACAGTAATGTANGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAA ]
[+] EMBL AI068330 [ GAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATTACGTGAATTA ]
[+] EMBL AI068157 [ GAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTA ]
[+] EMBL AI067010 [ GAAGCGGGCGATTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAATACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAACAGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTTGTATATCAACAAATACAGA ]
[-] EMBL CD086556 [ TGGTTGTCAGAACATTTACTGGATCAGCTGTTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATCACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACACCTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAATTCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTATTTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTCCACGTGCATTTGTTTGGATATGGTGTGGGTCAGCGCA]
consensusID : consensus_9758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[CTGCACTGACTCAACAAATCCAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATCACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACACCTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAATTCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTATTTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTCCACGTGCATTTGTTTGCATATGGTGTGGGTCAGTGCA]
[-] EMBL CD086543 [CTGCACTGACTCAACAAATCCAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTGGTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTTTTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATACTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAATATCCTAAATCACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACACCTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAATTCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTATTTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTCCACGTGCATTTGTTTGCATATGGTGTGGGTCAGTGCA]
consensusID : consensus_9758#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 375 fasta sequence
[CCTCAACACAGTCAAACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAGACACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTAGGCCCGAACATCGTTATGTAACGTTAAG]
[+] EMBL CD149754 [CCTCAACACAGTCAAACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAGACACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTAGGCCCGAACATCGTTATGTAACGTTAAG]
[-] EMBL SMAA25603 [ AGGAAAATA TTTAATTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAGACGTAGGCCC ]
[-] EMBL SMAA28861 [ ATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTA ]
consensusID : consensus_9758#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence
[CCTCAACACAGTCGGACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAAACACCTAAGGACAAAGTTTATGAAGGGATACATTTAGAAATACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTACGAGCATTGACGACTTCACGTATGATCAGAAAACCAGT]
[+] EMBL CD149760 [CCTCAACACAGTCGGACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAAACACCTAAGGACAAAGTTTATGAAGGGATACATTTAGAAATACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTACGAGCATTGACGACTTCACGTATGATCAGAAAACCAGT]
consensusID : consensus_9758#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence
[TTTTTTTTTTTTTTTTTTAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTAGGCCCGAACA]
[+] EMBL AI395089 [TTTTTTTTTTTTTTTTTTAACAAGGAAAATATTTTATTTTTTTTGATAACAAAATTTTTGTCTACAGAGTTTGGGTAGGAGCATTGACGACTTCACGTATGATCAGAAAACCAGTAACCGCAGAGGCGAACATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTTACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAGAAAACGTAGGCCCGAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9758#2 ------------------------------------------------------------
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 TTTTACTCTTGTGATTTGTTGCATGGTGTCTAAAGTGTCAATCAATGAACAGTATGGCCA 60
consensus_9758#1 ------------------------------------------------------------
consensus_9758#2 ------------------------------------------------------------
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 CCGAAATAAATTACAGCAACCCGTTTGACTGTGTTGAGGTTTCCCGGGCGAGATATAAGC 120
consensus_9758#1 ------------------------------------------------------------
consensus_9758#2 ------------------------------------------------------------
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 AGCTAAGGGACCGTCAATTAAGGCGACGTCGGGTTATTTTACGACATCTACTGAAGAACA 180
consensus_9758#1 ------------------------------------------------------------
consensus_9758#2 ------------------------------------------------------------
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 GTTCATTTTCATTAAGGTTAGAAAACAACAACCAACTCAGCCTAACTCTGTCAGATTTAC 240
consensus_9758#1 ------------------------------------------------------------
consensus_9758#2 ------------------------------------------------------------
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 TTGGTTACCGCAAACCTTCCTACCTACAGTTTGACGAGAACGTTTGTAGGAAGCGGGCGA 300
consensus_9758#1 ------------------------------------------------------------
consensus_9758#2 ------------------------------------------------------------
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 TTCTACCAATTATTTCCCGTTTAAAATGCCCAGTGCTTAGTCTTAAGCTGCGTCGTGCAA 360
consensus_9758#1 ------------------------------------------------------------
consensus_9758#2 --------------------------------------------------CCTCAACACA 10
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 TACAGTCTTTCCTAGGCGAATCTGGCACATTAAATCAAGATAATAAACAAATCATACAAC 420
consensus_9758#1 ------------------------------------------------------------
consensus_9758#2 GTCAAACGGGTTGCTGTAATTTATTTCGGTGGCCATACTGTTCATTGATTGACACTTTAG 70
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 AGTGGGATAAATTCAGTCTTGAAGTCGTTGGGGATAAATTAAGACAAACACTGGCATCTT 480
consensus_9758#1 -------------------------------------------------------CTGCA 5
consensus_9758#2 ACACATAGATCCCTTTCAGCACATATATGCCGAAGGATATAGTAACAAAAACTGAAACGA 130
consensus_9758#4 -----------------------------------------TTTTTTTTTTTTTTTTTTA 19
consensus_9758#3 -------------------------------------------------CCTCAACACAG 11
consensus_9758#0 GTATATCAACAAATACAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTG 540
consensus_9758#1 CTGACTCAACAAATCCAGACAGTAATGTAGGAGATAAAGCTTCAAATGACGACAGCGTTG 65
consensus_9758#2 ACAAG-GAAAATATTTTATTTT---TTTTGATAACAAAATTTTTGTCTACAGAGTTTGGG 186
consensus_9758#4 ACAAG-GAAAATATTTTATTTT---TTTTGATAACAAAATTTTTGTCTACAGAGTTTGGG 75
consensus_9758#3 TCGGA-CGGGTTGCTGTAATTTA--TTTCGGTGGCCATAC---TGTTCATTGATTGACAC 65
consensus_9758#0 GTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTT 600
consensus_9758#1 GTAAAACAGGAGATTCTAATTGTGATTTGGTTGTCAGAACATTTACTGGATCAGCTGCTT 125
* ** ** *** * * * * * *
consensus_9758#2 T------AGGAGCAT-TGACGACTTCACGTATGATCAGAAA-ACCAGTAACC-----GCA 233
consensus_9758#4 T------AGGAGCAT-TGACGACTTCACGTATGATCAGAAA-ACCAGTAACC-----GCA 122
consensus_9758#3 T------TTAAACACCTAAGGACAAAGTTTATGAAGGGATACATTTAGAAAT-----ACA 114
consensus_9758#0 TTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATA 660
consensus_9758#1 TTCTTAAAGGAACTCAAAGTGCTAATCCACATAATGATTACTGCCAACATTTTGTGGATA 185
* * * * ** * * *
consensus_9758#2 GAGGCGAAC-ATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTT 292
consensus_9758#4 GAGGCGAAC-ATCGTGACGCTTTTCACGAGCGACCACTTGTATGGGTCGTTGTAAATGTT 181
consensus_9758#3 TAGATCCCT-TTCAGCACATATATGCCGAAGGATA--TAGTAACAAAAACTGAAACGAAC 171
consensus_9758#0 CTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAAT 720
consensus_9758#1 CTGGTGAACGACCACAAAACTTTATACGTGATACTGGTCTGAGAAATCGATTTGAAGAAT 245
* * * * ** * * * * *
consensus_9758#2 ACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAG--AAAACGTAGGC 350
consensus_9758#4 ACGGAAAAAGCCAGACTTTGACTTTGTAGCAGACTCTGACCTAACAG--AAAACGTAGGC 239
consensus_9758#3 AAGGAAAATATTTTATTTTT-TTTGATAACAAAATTTTTGTCTACAG--A--GTTTGGGT 226
consensus_9758#0 ATCCTAAATTACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACAC 780
consensus_9758#1 ATCCTAAATCACGTGAATTAATTCGATTAAAAGATCAGTACATTCAGTCAAAGGCTACAC 305
* *** ** * * * * *** * *
consensus_9758#2 CC---GAACATCGTTATGTAACGTTAAG-------------------------------- 375
consensus_9758#4 CC---GAACA-------------------------------------------------- 246
consensus_9758#3 AC---GAGCATTGACGACTTCACGTATGATCAGAAAACCAGT------------------ 265
consensus_9758#0 CTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAAT 840
consensus_9758#1 CTCCTATGTATTTGTGTGCTGACTTACGAACATTTGATTTAAATGAGTTAGACTCAAAAT 365
*
consensus_9758#2 ------------------------------------------------------------
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 TCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTAT 900
consensus_9758#1 TCGATGTTATCCTGATTGAACCTCCTTTGGAAGAGTATCATCGAATGAATGGTGCTGTAT 425
consensus_9758#2 ------------------------------------------------------------
consensus_9758#4 ------------------------------------------------------------
consensus_9758#3 ------------------------------------------------------------
consensus_9758#0 TTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTC 960
consensus_9758#1 TTGATCAATATTGGAGTTGGGATGAGATTGAACGTTTAGAAATTGAACAAATCGCTGCTC 485
consensus_9758#2 -------------------------------------
consensus_9758#4 -------------------------------------
consensus_9758#3 -------------------------------------
consensus_9758#0 CACGTGCATTTGTTTGGATATGGTGTGGGTCAGCGCA 997
consensus_9758#1 CACGTGCATTTGTTTGCATATGGTGTGGGTCAGTGCA 522
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||