cluster # 9764

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Schistosoma mansoni
cluster # 9764 cluster # 9764 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9764#0 length = 589 sequences # 3
consensus_9764#1 length = 262 sequences # 1

consensus_9764#2 length = 153 sequences # 6
consensus_9764#3 length = 115 sequences # 1

consensusID : consensus_9764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 589
fasta sequence

                              [GTTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAATTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACGCGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGGTTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACACATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATCTGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGACTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATATTCAGTTATGTAATCTATTTCATTATGATCGTCAACTCACAAACTACTGGACCCCTCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCTTCACAAATTACTGGACCCA]

[+] EMBL CD092229             [GTTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAATTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACGCGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGGTTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACACATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATCTGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGACTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATATTCAGTTATGTAATCTATTTCA                                                                                                                                                   ]
[-] EMBL CD092130             [ TTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAATTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACGCGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGGTTAAATAAACCTAAGTATTGTTTTTTTCTTTCTCTTCTCCCAACACAAAGATATTCTCACATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATCTGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGACTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATATTCAGTTATGTAATCTATTTCAT                                                                                                                                                  ]
[+] EMBL CD068804             [                tgatgggtGGGTGTTATATAAATTTCATCTGATGGATACATAAATTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACGCGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGGTTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACACATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATCTGAATTTATAGACACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGACTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATATTCAGTTATGTAATCTATTTCATTATGATCGTCAACTCACAAACTACTGGACCCCTCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCTTCACAAATTACTGGACCCA]




>consensus_9764#0
GTTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAA
TTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACG
CGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGG
TTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACAC
ATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATC
TGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGA
CTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATA
TTCAGTTATGTAATCTATTTCATTATGATCGTCAACTCACAAACTACTGGACCCCTCACA
AACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAAC
TACTGGACCCATCACAAACTACTGGACCCTTCACAAATTACTGGACCCA

consensusID : consensus_9764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [CAATAATGCCCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCTCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCCCACACCCATCACAAACTACTGGACCCATCACAAACTCCTGGACCCATCACAAACTACTGGACCCATCACAAACTTCTGGACCCCATCACAAACTACTGGACCCGTCACAAACTACTGGACCCATCACCAAGTAGGCAGTATTGGGTGTGGGGTACC]

[-] EMBL CD068803             [CAATAATGCCCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCTCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCCCACACCCATCACAAACTACTGGACCCATCACAAACTCCTGGACCCATCACAAACTACTGGACCCATCACAAACTTCTGGACCCCATCACAAACTACTGGACCCGTCACAAACTACTGGACCCATCACCAAGTAGGCAGTATTGGGTGTGGGGTACC]




>consensus_9764#1
CAATAATGCCCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCTCA
CACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCCCACACCCATCACAA
ACTACTGGACCCATCACAAACTCCTGGACCCATCACAAACTACTGGACCCATCACAAACT
TCTGGACCCCATCACAAACTACTGGACCCGTCACAAACTACTGGACCCATCACCAAGTAG
GCAGTATTGGGTGTGGGGTACC

consensusID : consensus_9764#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 153
fasta sequence

                              [ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCA]

[+] EMBL CD168792             [ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCA]
[+] EMBL CD168788             [ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCA]
[-] EMBL CD168721             [ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACA                 ]
[-] EMBL CD168823             [ACAAACTACTGGACCCATCACAAACTACTGGA CCATCACAAACTACTGGACCCAT  CAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACA                                    ]
[-] EMBL CD168697             [                 TCACAAACTACTGGACCCATCACCAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCAC                  ]
[+] EMBL CD168747             [                  CACAAACTACTGGACCCATCACAAACTA    ACCCATCACAAACTA    ACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCAC                  ]




>consensus_9764#2
ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACA
AACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAAC
TACTGGACCCATCACAAACTACTGGACCCATCA

consensusID : consensus_9764#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [TGTGATGGGTCCAGTAGTTTGTGATGGGTCCAGCTATTTTGTGATGGGTCCAGTAGTTTGATGGGTCCAGTACTTTGTGATGGTCCACTTGTTTGTGATGGGTCCATTAGTTTGT]

[+] EMBL CD168827             [TGTGATGGGTCCAGTAGTTTGTGATGGGTCCAGCTATTTTGTGATGGGTCCAGTAGTTTGATGGGTCCAGTACTTTGTGATGGTCCACTTGTTTGTGATGGGTCCATTAGTTTGT]




>consensus_9764#3
TGTGATGGGTCCAGTAGTTTGTGATGGGTCCAGCTATTTTGTGATGGGTCCAGTAGTTTG
ATGGGTCCAGTACTTTGTGATGGTCCACTTGTTTGTGATGGGTCCATTAGTTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9764#0      GTTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAA 60
consensus_9764#2      ------------------------------------------------------------
consensus_9764#1      ------------------------------------------------------------
consensus_9764#3      ------------------------------------------------------------
                                                                                  

consensus_9764#0      TTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACG 120
consensus_9764#2      ------------------------------------------------------------
consensus_9764#1      ------------------------------------------------------------
consensus_9764#3      ------------------------------------------------------------
                                                                                  

consensus_9764#0      CGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGG 180
consensus_9764#2      ------------------------------------------------------------
consensus_9764#1      ------------------------------------------------------------
consensus_9764#3      ------------------------------------------------------------
                                                                                  

consensus_9764#0      TTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACAC 240
consensus_9764#2      ------------------------------------------------------------
consensus_9764#1      ------------------------------------------------------------
consensus_9764#3      ------------------------------------------------------------
                                                                                  

consensus_9764#0      ATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATC 300
consensus_9764#2      ------------------------------------------------------------
consensus_9764#1      ------------------------------------------------------------
consensus_9764#3      ------------------------------------------------------------
                                                                                  

consensus_9764#0      TGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGA 360
consensus_9764#2      ------------------------------------------------------------
consensus_9764#1      ---------------------------------CAATAATGCCCACACC--CAATACTGC 25
consensus_9764#3      ------------------------------------------------------------
                                                                                  

consensus_9764#0      CTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATA 420
consensus_9764#2      ------------------------------------------------------------
consensus_9764#1      CCACACCCAATACTGCTCACACCCAATACTGCTCACACCCAATACTGCC-------CACA 78
consensus_9764#3      ------------------------------------------------------------
                                                                                  

consensus_9764#0      TTCAGTTATGTAATCTATTTCATTATGATCGT-CAACTCACAAACTACTGGACCCCTCAC 479
consensus_9764#2      -------------------ACAAACTACTGGA-CCCATCACAAACTACTGGACCCATCAC 40
consensus_9764#1      CCCAATACTGCTCAC-ACCCAATACTGCCCACACCCATCACAAACTACTGGACCCATCAC 137
consensus_9764#3      -------------------------------------------TGTGATGGGTCCAGTAG 17
                                                                   *  ***  **   * 

consensus_9764#0      AAACTACTGGACCCATC-ACAAACTACTGGACCCATCACAAACTACTGGACCC-ATCACA 537
consensus_9764#2      AAACTACTGGACCCATC-ACAAACTACTGGACCCATCACAAACTACTGGACCC-ATCACA 98
consensus_9764#1      AAACTCCTGGACCCATC-ACAAACTACTGGACCCATCACAAACTTCTGGACCCCATCACA 196
consensus_9764#3      TTTGTGATGGGTCCAGCTATTTTGTGATGGGTCCA--GTAGTTTGATGGGTCC-AGTACT 74
                          *  ***  *** * *     *  ***  ***    *   *  ***  ** *  ** 

consensus_9764#0      AACTACTGGACCCATCACAAACTACTGGACCCTTCACAAATTA--CTGGACCCA------ 589
consensus_9764#2      AACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTA--CTGGACCCATCA--- 153
consensus_9764#1      AACTACTGGACCCGTCACAAACTACTGGACCCATCACCAAGTAGGCAGTATTGGGTGTGG 256
consensus_9764#3      TTGTGATGGTCCACTTGTTTG-TGATGGGTCCATTAGTTTGT------------------ 115
                         *  *** **  *       *  ***  ** * *     *                  

consensus_9764#0      ------
consensus_9764#2      ------
consensus_9764#1      GGTACC 262
consensus_9764#3      ------