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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1228 fasta sequence
[CTTCCAGGTGACAAAGAAAAAGGTCTGCTAGCAATCGAAGCCATAGAAGCAAACCTACATGCACCACGTGGTACCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAGCAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTAGAACCAGCTGCTGATCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACAAGTGGAACAAGATTCAAAGTTGCTTATGAAAGAGGATTAGCCATATTAGATTTATTGTATACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTGGAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAATCTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCCCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTAAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTTAGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGATTCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCTGCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAAGCTGAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTAAACCAGAAAATCCATACAAAAAGATGGTTGGATTACGTAAAGTAGACTGTTCTCCAGAATTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAAT-GGT-GGTGGTCATCAAAATGATTAAGCTTAA-TTCTGCC-AGAAGCTTCAATACATAAACTCATTTNCAT-ACATTGGAAACT-AATNANNTCTA-TTACANNATG-TTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATATGT]
[-] EMBL CD196103 [CTTCCAGGTGACAAAGAAAAAGGTCTGCTAGCAATCGAAGCCATAGAAGCAAACCTACATGCACCACGTGGTCCCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAGCAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTAGAACCAGCTGCTGACCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACAAGTGGAACAAGATTCAA ]
[+] EMBL CD183886 [ CTACTAGCAATCGAAGCCATAGAAGCAAACCTACATGCACCACGTGGTACCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAGCAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTAGAACCAGCTGCTGATCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACAAGTGGAACAAGATTCAAAGTTGCTTATGAAAGAGGATTAGCCATATTAGATTTATTGTATACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTGGAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAATCTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCCCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTANAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCTAGTTAAA TTTTAGTACGTGTTAATGGCAAGCC ]
[+] EMBL AI977605 [ AGCAATCGAAGCCATAGAAGCAAACCTACATGCACCACGTGGTACCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAGCAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTAGAACCAGCTGCTGATCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACAAGTGGAACAAGATTCAAAGTTGCTTATGAAAGAGGATTAGCCATATTAGATTTATTGTATACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTGGAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAATCTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCTCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTAAAGCCTCAACCTGCTACAATA ]
[+] EMBL BE431229 [ TATTAGATTTAATGTATACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTGGAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAATCTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCCCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTAAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTTAGTGGCAAG CAACACCACAATTGACTTGGTACCTGAATGATG ACCATTTG AC AGATTCATTTAC AAAATTTATAGTGATGGTTGCACAAACTATCTAGAAATG ATCGTTGT CTGC TTGC AGGGACT ATAAt ]
[+] EMBL CD081305 [ cAGGTT AGAAGGTT CAATCTAA AAAGGCTATTGAAGAAGTCGACCAGCCCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTAAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTTAGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGATTCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCTGCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAAGCTGAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTAAACCAGAAAATCCATACAAAAAGATGGTTGGATTACGTAAAGTAGACTGTTCTCCAGAATTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGGTGGGTGGTCATCAAAATGATTAAGCTTAANTTCTGCC AGAAGCTTCAATACATAAACTCATTTNCAT ACATTGGAAACT AATNANNTCTA TTACANNATG TTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATATGT]
[+] EMBL CD195923 [ AAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTTAGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGATTCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCTGCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAAGCTGANACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTANACCAGGAAATCCATAC ]
[-] EMBL CD075137 [ GTTAGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGATTCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCTGCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAAGCTGAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTAAACCAGAAAATCCATACAAAAAGATGGTTGGATTACGTAAAGTAGACTGTTCTCCAGAATTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAAT GGT GGTGGTCATCAAAATGATTAAGCTTAA TTCTGCCAAGAAGCTTCAATACATAAACTCATTTCAATAACATTGG AACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATAa ]
[+] EMBL CD139731 [ AGGTAAAGCTGAAGCTAAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTAAACCAGAAAATCCATACAAAAAGATGGTTGGAT ]
[+] EMBL SMAA18503 [ TCCAGAATTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAAT GGT GGTGGTCATCAAAATGATTAAGCTTAA TTCTGCC Aa ]
consensusID : consensus_9767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 371 fasta sequence
[AATTCGGCACGAGGATCACGTAAAGTAGACTGTTCTCCAGAATTGAACATAGCTTTAACAAGAACTACACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGTGGTGGTCATCAAAATGATTAAGCTTAATTCTGCCAAGAAGCTTCAATACATAAACTCATTTCAATAACATTGGAACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATA]
[+] EMBL CD081418 [AATTCGGCACGAGGATCACGTAAAGTAGACTGTTCTCCAGAATTGAACATAGCTTTAACAAGAACTACACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGTGGTGGTCATCAAAATGATTAAGCTTAATTCTGCCAAGAAGCTTCAATACATAAACTCATTTCAATAACATTGGAACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATA]
[+] EMBL CD084264 [ AGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGTGGTGGTCATCAAAATGATTAAGCTTAATTCTGCCAAGAAGCTTCAATACATAAACTCATTTCAATAACATTGGAACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9767#0 CTTCCAGGTGACAAAGAAAAAGGTCTGCTAGCAATCGAAGCCATAGAAGCAAACCTACAT 60
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 GCACCACGTGGTACCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAG 120
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 CAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTA 180
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 GAACCAGCTGCTGATCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACA 240
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 AGTGGAACAAGATTCAAAGTTGCTTATGAAAGAGGATTAGCCATATTAGATTTATTGTAT 300
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 ACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTG 360
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 GAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAAT 420
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 CTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCCC 480
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 GACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGAC 540
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 GTAAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTT 600
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 AGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGAT 660
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 TCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCT 720
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 GCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAA 780
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 GCTGAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTT 840
consensus_9767#1 ------------------------------------------------------------
consensus_9767#0 AAACCAGAAAATCCATACAAAAAGATGGTTGGATTACGTAAAGTAGACTGTTCTCCAGAA 900
consensus_9767#1 ------------------AATTCGGCACGAGGATCACGTAAAGTAGACTGTTCTCCAGAA 42
** * **** *************************
consensus_9767#0 TTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGA 960
consensus_9767#1 TTGAACATAGCTTTAACAAGAACTACACCATCTGCACAAACAATTATGGAAATGGAAAGA 102
******* ***************** **********************************
consensus_9767#0 GGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATG 1020
consensus_9767#1 GGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATG 162
************************************************************
consensus_9767#0 TTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGT 1080
consensus_9767#1 TTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGT 222
************************************************************
consensus_9767#0 GGTGGTCATCAAAATGATTAAGCTTAATTCTGCCA-GAAGCTTCAATACATAAACTCATT 1139
consensus_9767#1 GGTGGTCATCAAAATGATTAAGCTTAATTCTGCCAAGAAGCTTCAATACATAAACTCATT 282
*********************************** ************************
consensus_9767#0 TNCATA-CATTGGAAACTAATNANNTCTATT-ACANNATGTT-ATTTACTACACATGACA 1196
consensus_9767#1 TCAATAACATTGGAACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACA 342
* *** ******** *** * ****** *** ***** *****************
consensus_9767#0 TCAATTACAAACAGTCCAACTTTGATATATGT 1228
consensus_9767#1 TCAATTACAAACAGTCCAACTTTGATATA--- 371
*****************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||