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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1176 fasta sequence
[ATTGATCATAACCAATAAGAATAATTAATGAAGTATACAACAATATTTGTTATTATGCATTAAAACAACTTGGTTGGTTGTTAACAACAGAAAATGTAATATTGATTTTGAGAATAAATAATTGCATGAATTGATTCTGATAAAATTGTTTGAGTAATGAAATTTATTAACGGTATCTATAGGTATTATCAACGACGCGCAGGAATGGATGGTGGTACTAGTGGAAAACTTGTCATAGAGTTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAACCGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGTACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTA-CTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGG-AATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCTAACTGCGTTTTAATCACAATTTTCATGTATGAATCGACTAGATTTCGTATGATTTCTACTTGACG-TTCAAGCTGAGGCTCACTGGCTTCAAGTGATGAACTGTCAGATTGCTCTGTTTTTTCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCATGAATCAACTAATTCAGCTGATTCAGCACACAACTCCAATTGTTTATAGTCTTTGTAGACATTATGATTATCCGGATAGAATAGTGCAAAAGCATGCTTTTTACCGAAAAATCCCGTTTCAATATCACGTATTTTTAAACCATCCAATAAAAGGACATAACGTTTTTCTTTCTCTTCATCGTCTTTGTACCAGGTCAATGATTCAGTATTTAATACAAACCAAAAA]
[+] EMBL CD198624 [ATTGATCATAACCAATAAGAATAATTAATGAAGTATACAACAATATTTGTTATTATGCATTAAAACAACTTGGTTGGTTGTTAACAACAGAAAATGTAATATTGATTTTGAGAATAAATAATTGCATGAATTGATTCTGATAAAATTGTTTGAGTAATGAAATTTATTAACGGTATCTATAGGTATTATCAACGACGCGCAGGAATGGATGGTGGTACTAGTGGAAAACTTGTCATAGAGTTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAACCGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGTACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTA CTATTTGTA ]
[+] EMBL BG931818 [ ttcCTAGTGGAAAACTTGTCATAGAGTTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAACCGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGTACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTA CTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGG AATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCctaga ]
[-] EMBL CD164174 [ GTGGAAAACTTGTCATAGAGTTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAACCGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGTACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTATCTATTTGTAGAACTCCATCCACCAGGAGAAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGTCTAGGAGGAGGAAGTG ]
[+] EMBL CD188552 [ CTTTGATTGAACCCGTA CTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGG AATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCTAACTGCGTTTTAATCACAATTTTCATGTATGAATCGACT ]
[+] EMBL CD167874 [ GTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCTAACTGCGTTTTAATCACAATTTTCATGTATGAATCGACTAGATTTCGTATGATTTCTACTTGACG TTCAAGCTGAGGCTCACTGGCTTCAAGTGATGAACTGTCAGATTGCTCTGTTTTTTCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCATGAATCAACTAATTCAGCTGATTCAGCACACAACTCCAATTGTTTATAGTCTTTGTAGACATT ]
[-] EMBL CD166787 [ TTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCTAACTGCGTTTTAATCACAATTTTCATGTATGAATCGACTAGATTTCGTATGATTTCTACTTGACG TTCAAGCTGAGGCTCACTGGCTTCAAGTGATGAACTGTCAGATTGCTCTG TTTTTCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCAT ]
[-] EMBL CD141376 [ TGTATGAATCGACTAGATTTCGTATGATTTCTAC TGACGTTTCAAGCTGAGGCTCACTGCTTTCAAGTGATGAACTGTCAGATTGTTCTGTTTTTTCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCATGAATCAACTAATTCAGCTGATTCAGCACACAACTCCAATTGTTTATAGTCTTTGTAGACATTATGATTATCCGGATAGAATAGTGCAAAAGCATGCTTTTTACCGAAAAATCCCGTTTCAATATCACGTATTTTTAAACCATCCAATAAAAGGACATAACGTTTTTCTTTCTCTTCATCGTCTTTGTACCAGGTCAATGATTCAGTATTTAATACAAACCAAAAA]
consensusID : consensus_9768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 553 fasta sequence
[TGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTG-TTGAACCCGTACTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAA]
[+] EMBL CD200972 [TGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTG TTGAACCCGTACTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGAC ]
[+] EMBL CD183679 [ cTTTGATTGAACCCGTACTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAA]
[-] EMBL CD194593 [ TGAACCCGTACTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCAT ]
consensusID : consensus_9768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence
[CTGAATTAGTTGATTCATGGAAGGCATCGTTTTTGCGTGCTGGTGTTTATCCAGNTAAAACTAAATCGGNAAAAACAGANGTATGTCATANAANCAGNATTATCCTACTGATGNCTTTTCCGTGGNTANNNANGTGN]
[+] EMBL SM688 [CTGAATTAGTTGATTCATGGAAGGCATCGTTTTTGCGTGCTGGTGTTTATCCAGNTAAAACTAAATCGGNAAAAACAGANGTATGTCATANAANCAGNATTATCCTACTGATGNCTTTTCCGTGGNTANNNANGTGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9768#0 ATTGATCATAACCAATAAGAATAATTAATGAAGTATACAACAATATTTGTTATTATGCAT 60
consensus_9768#1 ------------------------------------------------------------
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 TAAAACAACTTGGTTGGTTGTTAACAACAGAAAATGTAATATTGATTTTGAGAATAAATA 120
consensus_9768#1 ------------------------------------------------------------
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 ATTGCATGAATTGATTCTGATAAAATTGTTTGAGTAATGAAATTTATTAACGGTATCTAT 180
consensus_9768#1 ---------------------------------------------------TGTACCTGT 9
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 AGGTATTATCAACGACGCGCAGGAATGGATGGTGGTACTAGTGGAAAACTTGTCATAGAG 240
consensus_9768#1 AGAT----CCAGGAGCAGTCA--AACCACCAGGAATATCACTCAGTAACCAGTCGTCA-- 61
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 TTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAAC 300
consensus_9768#1 TTGACTG--------GAGGTGGAATTGGTGTTGATACAG-----------TGGACATAGA 102
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 CGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGT 360
consensus_9768#1 CACTTCACTTATAATATTCAATGCT-TCTTTCATAGCAT-CATAAACACGGACC------ 154
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 ACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTACTATTTGTAGAACTCCATCCACCA 420
consensus_9768#1 ATTTCATCGCG--------TTTTTGTTGAACCCGTACTATTTGTAGAACTCCATCCACCA 206
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 GGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCT 480
consensus_9768#1 GGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCT 266
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 GTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACT 540
consensus_9768#1 GTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACT 326
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 GGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCT 600
consensus_9768#1 GGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCT 386
consensus_9768#2 ----------------------------------------------------------CT 2
**
consensus_9768#0 TCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGAT 660
consensus_9768#1 TCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGAT 446
consensus_9768#2 GAATTAGTTGATTCATGGA-AGGCATCGTTTTTGCGTGCTGGTGTTTATCCAGNTAAAAC 61
** * * **** * * * * * *** ** * * **** * ** * *
consensus_9768#0 TCA---GACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCT 717
consensus_9768#1 TCA---GACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCT 503
consensus_9768#2 TAAATCGGNAAAAACAGANGTATGTCATANAANCAGNATTATCCTACTGATGNCTTTTCC 121
* * * * ** * * **** ** * * * ** * *
consensus_9768#0 TTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCT 777
consensus_9768#1 TTTAAGAAGGATTTAATTGCGG-AATCAATGGGGAAGGCAGTTGTCCAGAA--------- 553
consensus_9768#2 GTGGNTANNNANGTGN-------------------------------------------- 137
* * * *
consensus_9768#0 AACTGCGTTTTAATCACAATTTTCATGTATGAATCGACTAGATTTCGTATGATTTCTACT 837
consensus_9768#1 ------------------------------------------------------------
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 TGACGTTCAAGCTGAGGCTCACTGGCTTCAAGTGATGAACTGTCAGATTGCTCTGTTTTT 897
consensus_9768#1 ------------------------------------------------------------
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 TCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCATGAATCA 957
consensus_9768#1 ------------------------------------------------------------
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 ACTAATTCAGCTGATTCAGCACACAACTCCAATTGTTTATAGTCTTTGTAGACATTATGA 1017
consensus_9768#1 ------------------------------------------------------------
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 TTATCCGGATAGAATAGTGCAAAAGCATGCTTTTTACCGAAAAATCCCGTTTCAATATCA 1077
consensus_9768#1 ------------------------------------------------------------
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 CGTATTTTTAAACCATCCAATAAAAGGACATAACGTTTTTCTTTCTCTTCATCGTCTTTG 1137
consensus_9768#1 ------------------------------------------------------------
consensus_9768#2 ------------------------------------------------------------
consensus_9768#0 TACCAGGTCAATGATTCAGTATTTAATACAAACCAAAAA 1176
consensus_9768#1 ---------------------------------------
consensus_9768#2 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||