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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1326 fasta sequence
[TGGCGGCCGCGAAGAATTCGATTGACAGCATTCACAAGCCATGGTCAGCTGGGTACAGGAGATGATAAAGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCTGTGGTTTGAATTCTGTTGGTCAGCTGGGTCGTTCAAATGACTGCAATCATTTTAAAATCATTCCGTTCTCTTTTGCACCAACTGTTCATAAAGTATCGTGTGGCTGGGATTTTTCTGTTGCAGTACTAAGTGATGGATCTGTTTTCTCGTGGGGATCAAATGAATATGGGCAGTTGGGTAAAGAAAGTATTAATTCAATCATAGTTCCTGTTCGTATTGACATAGAGCCTGTTCGATCTATATCTGCAGGCCTAAGACATGTCGTTTCTGTGACAATCTCCGGAAAACTGTTTGGTTGGGGTTCTAATCGCCGAAAACAATTATTCGTTGATAAAGTGTTGAATAAAGCCGAGCATTATGATGAATCGAAACAAATATGTTACCGTCCCACTCTATTGAACTCTGTATTAGGTGATACACATGAGTGGGTCGATTGTGCTGCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTTGAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG-AGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGATGGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATGGGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTTTTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATGTAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGTAATAAAGTGTGATGAG]
[+] EMBL CD165209 [TGGCGGCCGCGAAGAATTCGATTGACAGCATTCACAAGCCATGGTCAGCTGGGTACAGGAGATGATAAAGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCTGTGGTTTGAATTCTGTTGGTCAGCTGGGTCGTTCAAATGACTGCAATCATTTTAAAATCATTCCGTTCTCTTTTGCACCAACTGTTCATA ]
[+] EMBL CD081138 [ TTTAAAATCATTCCGTTCTCTTTTGCACCAACTGTTCATAAAGTATCGTGTGGCTGGGATTTTTCTGTTGCAGTACTAAGTGATGGATCTGTTTTCTCGTGGGGATCAAATGAATATGGGCAGTTGGGTAAAGAAAGTATTAATTCAATCATAGTTCCTGTTCGTATTGACATAGAGCCTGTTCGATCTATATCTGCAGGCCTAAGACATGTCGTTTCTGTGACAATCTCCGGAAAACTGTTTGGTTGGGGTTCTAATCGCCGAAAACAATTATTCGTTGATAAAGTGTTGAATAAAGCCGAGCATTATGATGAATCGAAACAAATATGTTACCGTCCCACTCTATTGAACTCTGTATTAGGTGATACACATGAGTGGGTCGATTGTGCTGCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTTGAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGncag ]
[-] EMBL CD111476 [ CTGTTTGGTTGGGGTTCTAATCGCCGAAAACAATTATTCGTTGATAAAGTGTTGAATAAAGCCGAGCATTATGATGAATCGAAACAAATATGTTACCGTCCCACTCTATTGAACTCTGTATTAGGTGATACACATGAGTGGGTCGATTGTGCTGCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTTGAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATG ]
[-] EMBL CD187571 [ GCTTCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTTGAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAGAAGCA ]
[-] EMBL CD074961 [ ATACTCGA TTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG AGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGATGGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATGGGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTTTTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATGTAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGTAATAAAGTGTGATGAG]
[+] EMBL CD078709 [ TGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG AGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGATGGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATGGGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTTTTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATGTAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGT ATAAAGTGTGATG ]
[-] EMBL CD073172 [ GAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG AGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGATGGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATGGGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTTTTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATGTAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGTAATAAAGTGTGATGAG]
[+] EMBL CD070975 [ GGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG AGCTCTCATTGGCTATCGA ]
consensusID : consensus_9769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 353 fasta sequence
[AGAGATTATGGNCGNGTGATCTAAAGTGGTACGTTACTCTAGTTTGTATTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCTTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGCGACAATTTAAGTCTCCTCTTTCTTATGCTTACACCCCGCGCGAACAGCCATGGGCAGNTGGGTACAGGAGATGATAAGGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCT]
[+] EMBL CD152917 [AGAGATTATGGNCGNGTGATCTAAAGTGGTACGTTACTCTAGTTTGTATTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCTTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGCGACAATTTAAGTCTCCTCTTTCTTATGCTTACACCCCGCGCGAACAGCCATGGGCAGNTGGGTACAGGAGATGATAAGGATGCTTA ]
[+] EMBL CD152956 [ gcCGCGTGATCTAAAGTGGTACGTTACTCTAGTTTGTATTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCTTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGCGACAATTTAAGTCTCCTCTTTCTTATGCTTACATGGGGTGCGAACAGCCATGGTCAGCTGGGTACAGGAGATGATAAAGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCT]
consensusID : consensus_9769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence
[TTATGGCCGCGTGATCTAAAGTGGTACGTTACTCTAGTTTGTGTTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCCTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGTGAGCTTTGAGTATCTAAGTATTCGTCACTCCAGTGTTTTTCCAACGGATCTTCATTTGCTTCCTTTTATGTTATGC]
[+] EMBL CD200899 [TTATGGCCGCGTGATCTAAAGTGGTACGTTACTCTAGTTTGTGTTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCCTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGTGAGCTTTGAGTATCTAAGTATTCGTCACTCCAGTGTTTTTCCAACGGATCTTCATTTGCTTCCTTTTATGTTATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 TGGCGGCCGCGAAGAATTCGATTGACAGCATTCACAAGCCATGGTCAGCTGGGTACAGGA 60
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 GATGATAAAGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATC 120
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 TCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCTGTGGTTTG 180
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 AATTCTGTTGGTCAGCTGGGTCGTTCAAATGACTGCAATCATTTTAAAATCATTCCGTTC 240
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 TCTTTTGCACCAACTGTTCATAAAGTATCGTGTGGCTGGGATTTTTCTGTTGCAGTACTA 300
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 AGTGATGGATCTGTTTTCTCGTGGGGATCAAATGAATATGGGCAGTTGGGTAAAGAAAGT 360
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 ATTAATTCAATCATAGTTCCTGTTCGTATTGACATAGAGCCTGTTCGATCTATATCTGCA 420
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 GGCCTAAGACATGTCGTTTCTGTGACAATCTCCGGAAAACTGTTTGGTTGGGGTTCTAAT 480
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 CGCCGAAAACAATTATTCGTTGATAAAGTGTTGAATAAAGCCGAGCATTATGATGAATCG 540
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 AAACAAATATGTTACCGTCCCACTCTATTGAACTCTGTATTAGGTGATACACATGAGTGG 600
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 GTCGATTGTGCTGCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTT 660
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 GAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTC 720
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 ACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAAT 780
consensus_9769#1 -------------------------------------------------AGAGATTATGG 11
consensus_9769#2 ------------------------------------------------------TTATGG 6
consensus_9769#0 TATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAA 840
***
consensus_9769#1 NC-GNGTGATCTAAAGTGGTACGTTACTCTAGTTTGTATTCG-ATGCCATGTACCAGATT 69
consensus_9769#2 CC-GCGTGATCTAAAGTGGTACGTTACTCTAGTTTGTGTTCG-ATGCCATGTACCAGATT 64
consensus_9769#0 CTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTG 900
* ** ** * * *** * * ** * * * ** ** * *
consensus_9769#1 TTA------TGTGCTTCGTTAAATAAAAACCAACTG-GATTACGATTAATTTGGTTA-AT 121
consensus_9769#2 TTA------TGTGCTTCGTTAAATAAAAACCAACTG-GATTACGATTAATTTGGTTA-AT 116
consensus_9769#0 TTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCAT 960
*** ** ** *** * ** * * ** **** ***** * * **
consensus_9769#1 ATCTTATAAAAGTCAATA---ATTTCGTCTTTCGTCTCCATGTAAACA-AAGGGCGACAA 177
consensus_9769#2 ATCCTATAAAAGTCAATA---ATTTCGTCTTTCGTCTCCATGTAAACA-AAGGGTGA-GC 171
consensus_9769#0 ATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTG 1020
*** * ***** ** **** * *** * ** * * ** *
consensus_9769#1 TTTAAGTCTCCTCTTTCTTAT--GCTTACACCCCGCGCGAACAGCCATGGGCAGNTGGGT 235
consensus_9769#2 TTTGAGTATCTAAGTATTCGTC-ACTCCAGTGTTTTTCCAACGGATCT---TCATTTGCT 227
consensus_9769#0 CTTGTGGTTCAGAGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGAT 1080
** * ** * * ** ** * * * *
consensus_9769#1 ACAGGA--GATGATAAGGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCG 293
consensus_9769#2 TCCTTT--TATGTTATGC------------------------------------------ 243
consensus_9769#0 GGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATG 1140
*** ** *
consensus_9769#1 CTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCT 353
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 GGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTT 1200
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 TTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATG 1260
consensus_9769#1 ------------------------------------------------------------
consensus_9769#2 ------------------------------------------------------------
consensus_9769#0 TAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGTAATAAAGTGT 1320
consensus_9769#1 ------
consensus_9769#2 ------
consensus_9769#0 GATGAG 1326
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||