These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1092 fasta sequence [ATATATTTACGTAAAATATGTTGAAACAATTCTTTTGATGTACTTCTTTTTTTGTACTATCTCCCTCTACCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTGTTACCATCTCCATCATTATCATCAATATTATCGTTTGTTTGTTGGTTGTTTTTTTTAAAAAAATTTTTCTACTTATCTTGATTACGCAATCTTCTTCAATCGAGCCCCTTCAACGTTGGCTAACGGGAATATAGTCTATCTACCTATCCCACCCCTCTCTCTCTCTCTCTCTCTGTTACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGAAATGAAATCATTAATAATTGGAGAAAAAACAAAATCTTAAATACCAAATATCACTTATATTCATTCTTCATTATCAACTTTACCAAGATGCTATTTTTAGGTGTGTGTGTGTGTATGTGTGTGTATGGATATATTGACATTCGTTTGTTTGTTCG--TTTTTTTTTTAAAAAAAATATTTTTTCTACTAACCTTGATTACGTAATTTTCTTCAGTTGAGCCCCTTCAACGATGGCTTACGGGAATATATAGTCCATCTCCCTCTCTCTCTCTTCGTTACCATCTCCATCATTATCATCAATATTACCCCTATCAACATATGAAAACAAAACATCAAATACCTAATATCACCTATATTCATTCTTTATTATCAACTTGATCAAGATGTTATTTTTTAGGTGCGTGTGTGTATGTATGCGCGCGCGTGTGTGTGTATCTATGGATATATTCACATTTGTTTGTTTGTTGGGTTTTTTTTTAAAAAATTTTTTTTTGTTTTCTACTAATATTGATTACATAATTTTCTACTGTTATTTAATTATCATTATTATTATTGTGAATACATGCTCGTTTTGATTGATCATTATTATTATTAGTCGTTATGGCTAAGTTCTTTCTCATTGAACTAGATTAGATTCGGGCTTTTTTTTTATTACATAATATTCACTTGACAACAGCAACAACAACAAAAAAGAAAAAAAAGAAAAACAGAGAAAAAAATTTATACAAAAACATGAATATTATTCTCTTTTCTATTTTCGGTTAAT] [+] EMBL AI977678 [ATATATTTACGTAAAATATGTTGAAACAATTCTTTTGATGTACTTCTTTTTTTGTACTATCTCCCTCTACCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTGTTACCATCTCCATCATTATCATCAATATTATCGTTTGTTTGTTGGTTGTTTTTTTTAAAAAAATTTTTCTACTTATCTTGATTACGCAATCTTCTTCAATCGAGCCCCTTCAACGTTGGCTAACGGGAATATAGTCTATCTACCTATCCCACCCCTCTCTCTCTCTCTCTCTCTGTTACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGAAATGAAATCATTAATAATTGGAGAAAAAACAAAATCTTAAATACCAAATATCACTTATATTCATTCTTCATTATCAACTTTACCAAGATGCTATTTTTAGGTGTGTGTGTGTGTATGTGTGTGTATGGATATATTGACATTCGTTTGTTTGTTCG TTTTTTTTTTAAAAAAAATATTTTTTCTACTAACCTTGATTACGTAATTNTCTTCAGTTGAGCCCCTTCAACGATGGCTTACGGGAATATATAGTCCATCTCCCTCTCTCTCTCTTCG TACCATCTCCATCATTATCATCAATATTACCCCTATCAACATATGAAAACANAACATCAAA ] [+] EMBL AW017473 [ ACCTATCCCACCCCTCTCTCTCTCTCTCTCTCTGTTACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGAAATGAAATCATTAATAATTGGAGAAAAAACAAAATCTTAAATACCAAATATCACTTATATTCATTCTTCATTATCAACTTTACCAAGATGCTATTTTTAGGTGTGTGTGTGTGTATGTGTGTGTATGGATATATTGACATTCGTTTGTTTGTTCGTTTTTTTTTTTTAAAAAAAATATTTTTTCTACTAACCTTGATTACGTAATTTTCTTCAGTTGAGCCCCTTCAACGATGGCTTACGGGAATATATAGACCATCTCCCTCTCTCTCTCTTCGTTACCATCTCCATCATTATCATCAATATTACCCCTATCAACATATGAAAACAAAACATCAAATACCTAATATCACCTATATTCATTCTTTATTATCAACTTGATCAAGATGTTATTTTTTAGGTGCGTGTGTGTATGTATGCGCGCGCGTGTGTGTGTATCTATGGATATATTCACATTTGTTTGCTTGTTGGGTTTTTTT ] [+] EMBL AI067557 [ TATTTTTTCTACTAACCTTGATTACGTAATTTTCTTCAGTTGAGCCCCTTCAACGATGGCTTACGGGAATATATAGTCAATCTCCCTCTCTCTCTCTTCGTTACCATCTCCATCATTATCAACAATATTt ] [-] EMBL CD077022 [ TTTTTTCTACTAACCTTGATTACGTAATTTTCTTCAGTTGAGCCCCTTCAACGATGGCTTACGGGAATATATAGTCCATCTCCCTCTCTCTCTCTTCGTTACCATCTCCATCATTATCATCAATATTACCCCTATCAACATATGAAAACAAAACATCAAATACCTAATATCACCTATATTCATTCTTTATTATCAACTTGATCAAGATGTTATTTTTTAGGTGCGTGTGTGTATGTATGCGCGCGCGTGTGTGTGTATCTATGGATATATTCACATTTGTTTGTTTGTTGGGTTTTTTTTTAAAAAATTTTTTTTTGTTTTCTACTAATATTGATTACATAATTTTCTACTGTTATTTAATTATCATTATTATTATTGTGAATACATGCTCGTTTTGATTGATCATTATTATTATTAGTCGTTATGGCTAAGTTCTTTCTCATTGAACTAGATTAGATTCGGGCTTTTTTTTTATTACATAATATTCACTTGGCAACAGC ] [-] EMBL BF936188 [ ACTAACCTTGATTACGTAATTTTCTTCAGTTGAGCCCCTTCAACGATGGCTTACGGGAATATATAGTCCATCTCCCTCTCTCTCTCTTCGTTACCATCTCCATCATTATCATCAATATTACCCCTATCAACATATGAAAACAAAACATCAAATACCTAATATCACCTATATTCATTCTTTATTATCAACTTGATCAAGATGTTATTTTTTAGGTGCGTGTGTGTATGTATGCGCGCGCGTGTGTGTGTATCTATGGATATATTCACATTTGTTTGTTTGTTGGGTTTTTTTTTAAAAAATTTTTTTTTGTTTTCTACTAATATTGATTACATAATTTTCTACTGTTATTTAATTATCATTATTATTATTGTGAATACATGCTCGTTTTGATTGATCATTATTATTATTAGTCGTTATGGCTAAGTTCTTTCTCATTGAACTAGATTAGATTCGCGC TTTTTTTTATTACATAATATTCACTTGACAACAGC ] [-] EMBL SMAA25700 [ ATATTCATTCTTTATTATCAACTTGATCAAGATGTTATTTTTTAGGTGCGTGTGTGTATGTATGCGCGCGCGTGTGTGTGTATCTATGGATATATTCACATTTGTTTGTTTGTTGGG TTTTTTTTAAAAAAATTTTTTTTGTNNTCTACTAATATTGATTACATAATTTTCTACTGTTATTTAATTATCATTATTATTATTGTGAATACATGCTCGTTTTGATTGATCATTATTATTATTAGTCGTTATGGCTAAGTTCTTTCTCATTGAACTAGATTAGATTCGGGCTTTTTTTTTATTACATAATATTCACTTGACAACAGC ] [-] EMBL CD073362 [ GTGTGTATGTATGCGCGCGCGTGTGTGTGTATCTATGGATATATTCACATTTGTTTGTTTGTTGGGTTTTTTTTTAAAAAATTTTTTTTTGTTTTCTACTAATATTGATTACATAATTTTCTACTGTTATTTAATTATCATTATTATTATTGTGAATACATGCTCGTTTTGATTGATCATTATTATTATTAGTCGTTATGGCTAAGTTCTTTCTCATTGAACTAGATTAGATTCGGGC TTTTTTTATTACATAATATTCACTTGACAACAGCAACAACAACAAAAAAGAAAAAAAAGAAAAACAGAGAAAAAAATTTATACAAAAACATGAATATTATTCTCTTTTCTATTTTCGGTTAAT] consensusID : consensus_9773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TTTCTACTTATCTTGATTACGCAATCTTCTTCAATCGAGCCCCTTCAACGTTGGCTAACGGGAATATAGTCTATCTACCTCTCCCACCCCTCTCTCTCTCTCTCTCTCTGTTACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGAAATGAAATCATTAATAATTGGAGAAAAAACAAAATCTTAAATACCAAATATCACTTATATTCATTCTTCATTATCAACTTTACCAAGATGCTATTTTTAGGCGTGTGTGTATGTATGCGCGCGCGTGTGTGTGTATCTATGGATATATTCACATTTGTTTGTTTGTTGGGTTTTTTTTTAAAAAATTTTTTTTTGTTTTCTACTAATATTGATTACATAATTTTCTACTGTTATTTAATTATCATTATTATTATTGNGAATACATGCTCGTTTTGATTGATCATTAT] [+] EMBL CD078904 [TTTCTACTTATCTTGATTACGCAATCTTCTTCAATCGAGCCCCTTCAACGTTGGCTAACGGGAATATAGTCTATCTACCTCTCCCACCCCTCTCTCTCTCTCTCTCTCTGTTACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGAAATGAAATCATTAATAATTGGAGAAAAAACAAAATCTTAAATACCAAATATCACTTATATTCATTCTTCATTATCAACTTTACCAAGATGCTATTTTTAGGCGTGTGTGTATGTATGCGCGCGCGTGTGTGTGTATCTATGGATATATTCACATTTGTTTGTTTGTTGGGTTTTTTTTTAAAAAATTTTTTTTTGTTTTCTACTAATATTGATTACATAATTTTCTACTGTTATTTAATTATCATTATTATTATTGNGAATACATGCTCGTTTTGATTGATCATTAT] consensusID : consensus_9773#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [CTTCGTTACCATCTCCATCATTATCATCAATATTACCCCTATCAACATATGAAACAAAACATCAAATACCTAATATCACCTATATTCATTCTTTATTATCAACTTGATTAAAGATGTTATTTTTTAGGTGCGTGTGTGAATGAATGCGCGCGCGTGTGTGTGAATCTATGGATTATAATTACATTTGTTTTGATATGGTGGGGTTTTTTTTAAAAAATTTTTTTTTGGTTTCAACCAAAATTAGAGTAACATAATTTTAGCTGTAATTTAATTAGCAGTATTATTATTGGGAATACTGCCGTTTTGTTGGTCTTATATGAGTAGGCGTATGGCTATGTTCTTCTATTGACTAGATTAGATTCGGGCTTTTTTATAACAAAATATTCACTGACACAGCAACACCACAAAATGAAAAAAGGAAACGGGGAAAAATCTATACAA] [+] EMBL AW018291 [CTTCGTTACCATCTCCATCATTATCATCAATATTACCCCTATCAACATATGAAACAAAACATCAAATACCTAATATCACCTATATTCATTCTTTATTATCAACTTGATTAAAGATGTTATTTTTTAGGTGCGTGTGTGAATGAATGCGCGCGCGTGTGTGTGAATCTATGGATTATAATTACATTTGTTTTGATATGGTGGGGTTTTTTTTAAAAAATTTTTTTTTGGTTTCAACCAAAATTAGAGTAACATAATTTTAGCTGTAATTTAATTAGCAGTATTATTATTGGGAATACTGCCGTTTTGTTGGTCTTATATGAGTAGGCGTATGGCTATGTTCTTCTATTGACTAGATTAGATTCGGGCTTTTTTATAACAAAATATTCACTGACACAGCAACACCACAAAATGAAAAAAGGAAACGGGGAAAAATCTATACAA] consensusID : consensus_9773#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [ACCTATCCCACCCCTCACTGTCTATCTCTCTCTGTGACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGCAATGAAATCATTAATAATGGGAGAAGCAAACACAATCTTAAATACCAAATATCACTTATATTCATTCTTCATTATCAACTCTACCAAGATGCTATATTTAGGTGTGCGTGTGTGTATGTGTGTGTATGGATATATTGACATTCGTTTGATTGTACGTTTCTCCTATCTAAATAAAAGATGATTGCTACT] [+] EMBL AI977253 [ACCTATCCCACCCCTCACTGTCTATCTCTCTCTGTGACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGCAATGAAATCATTAATAATGGGAGAAGCAAACACAATCTTAAATACCAAATATCACTTATATTCATTCTTCATTATCAACTCTACCAAGATGCTATATTTAGGTGTGCGTGTGTGTATGTGTGTGTATGGATATATTGACATTCGTTTGATTGTACGTTTCTCCTATCTAAATAAAAGATGATTGCTACT] consensusID : consensus_9773#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [GTTGATGTTTGTACTTCAATACATAGACGTATATATATGTGTGTTTATGCATATATATTTACGTAAAATATGTTGAAGCAATTCTTTTGATGTACTTCTTTTTTTGTACTATCTCCCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTGTTACCATCTCCATCATTATCA] [+] EMBL CD078903 [GTTGATGTTTGTACTTCAATACATAGACGTATATATATGTGTGTTTATGCATATATATTTACGTAAAATATGTTGAAGCAATTCTTTTGATGTACTTCTTTTTTTGTACTATCTCCCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTGTTACCATCTCCATCATTATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 ATATATTTACGTAAAATATGTTGAAACAATTCTTTTGATGTACTTCTTTTTTTGTACTAT 60 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 CTCCCTCTACCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTGTTACCATCTCCATCA 120 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 TTATCATCAATATTATCGTTTGTTTGTTGGTTGTTTTTTTTAAAAAAATTTTTCTACTTA 180 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 TCTTGATTACGCAATCTTCTTCAATCGAGCCCCTTCAACGTTGGCTAACGGGAATATAGT 240 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 CTATCTACCTATCCCACCCCTCTCTCTCTCTCTCTCTCTGTTACCATCTCAATCATTATC 300 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 ATCAATATGATCCCATATCAACATATGAAATGAAATCATTAATAATTGGAGAAAAAACAA 360 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 AATCTTAAATACCAAATATCACTTATATTCATTCTTCATTATCAACTTTACCAAGATGCT 420 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 ATTTTTAGGTGTGTGTGTGTGTATGTGTGTGTATGGATATATTGACATTCGTTTGTTTGT 480 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 -----------TTTCTACTTATCTTGATTACGCAATCTTCTTCAATCGAGCCCCTTCAAC 49 consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ------------------------------------------------------------ consensus_9773#0 TCGTTTTTTTTTTAAAAAAAATATTTTTTCTACTAACCTTGATTACGTAATTTTCTTCAG 540 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 GTTGGCTAACGGGAATATAGTCTATCTACCTCTCCCACCCCTCTCTCTCTCTCTCTCTCT 109 consensus_9773#3 ---------------------------ACCTATCCCACCCCTCACTGTCTATCTCTCTCT 33 consensus_9773#2 --------------------------------------------------------CTTC 4 consensus_9773#0 TTGAGCCCCTTCAACGATGGCTTACGGGAATATATAGTCCATCTCCCTCTCTCTCTCTTC 600 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 GTTACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGAAATGAAATCAT 169 consensus_9773#3 GTGACCATCTCAATCATTATCATCAATATGATCCCATATCAACATATGCAATGAAATCAT 93 consensus_9773#2 GTTACCATCTCCATCATTATCATCAATATTACCCC-TATCAACATATG------------ 51 consensus_9773#0 GTTACCATCTCCATCATTATCATCAATATTACCCC-TATCAACATATGA----------- 648 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 TAATAATTGGAGAAA-AAACAAAATCTTAAATACCAAATATCACTTATATTCATTCTTCA 228 consensus_9773#3 TAATAATGGGAGAAGCAAACACAATCTTAAATACCAAATATCACTTATATTCATTCTTCA 153 consensus_9773#2 ----------------AAACAAAACATCAAATACCTAATATCACCTATATTCATTCTTTA 95 consensus_9773#0 ----------------AAACAAAACATCAAATACCTAATATCACCTATATTCATTCTTTA 692 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 TTATCAACTTTACCAA-GATGCTATTTTT-AGGCGTGTGTGTA--TGTATGCGCGCGCGT 284 consensus_9773#3 TTATCAACTCTACCAA-GATGCTATATTT-AGGTGTGCGTGTG--TGTATGTGTGTG--- 206 consensus_9773#2 TTATCAACTTGATTAAAGATGTTATTTTTTAGGTGCGTGTGTGAATGAATGCGCGCGCGT 155 consensus_9773#0 TTATCAACTTGATCAA-GATGTTATTTTTTAGGTGCGTGTGTGTATGTATGCGCGCGCGT 751 consensus_9773#4 --------------------------GTTGATGTTTGTACTTCAATACATAGACGTATAT 34 ** * * * * * ** * consensus_9773#1 GTGTGTGTATCTATGGAT--ATATTCACATTTGTTT--GTTTGTTGGGTTTTTTTTTAAA 340 consensus_9773#3 -----------TATGGAT--ATATTGACATTCGTTT--GATTGTACG--TTTCTCCTATC 249 consensus_9773#2 GTGTGTGAATCTATGGATT-ATAATTACATTTGTTTTGATATGGTGGGGTTTTTTTTAAA 214 consensus_9773#0 GTGTGTGTATCTATGGAT--ATATTCACATTTGTTT--GTTTGTTGGGTTTTTTTTTAAA 807 consensus_9773#4 ATATGTGTGTTTATGCATATATATTTACGTAAAATA--TGTTGAAGCAATTCTTTTGATG 92 **** ** *** * ** * * ** ** * * consensus_9773#1 AAATTTTTTTTTGTTTTCTACTAATATT-GATTACATAATTTTCTACTGTTATTTAATTA 399 consensus_9773#3 TAAATAAAAGATGATTGCTACT-------------------------------------- 271 consensus_9773#2 AAATTTTTTTTTGGTTTCAACCAAAATTAGAGTAACATAATTTTAGCTGTAATTTAATTA 274 consensus_9773#0 AAATTTTTTTTTGTTTTCTACTAATATT-GATTACATAATTTTCTACTGTTATTTAATTA 866 consensus_9773#4 TACTTCTTTTTTTGTACTATCTCCCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTGTTA 152 * * * * * consensus_9773#1 TCATTATTATTATTGNGAATACATGCTCGTTTTGATTGATCATTAT-------------- 445 consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 GCAGTATTATTATTGGGAATACT--GCCGTTTTGTTGGTCTTATATGAGTAGGCGT---- 328 consensus_9773#0 TCATTATTATTATTGTGAATACATGCTCGTTTTGATTGATCATTATTATTATTAGTCGTT 926 consensus_9773#4 CCATCTCCATCATTATCA------------------------------------------ 170 consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 ATGGCTATGTTCTT---CTATTGACTAGATTAGATTCGGGCTTTTTTATAACAAAATATT 385 consensus_9773#0 ATGGCTAAGTTCTTTCTCATTGAACTAGATTAGATTCGGGCTTTTTTTTTATTACATAAT 986 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ------------------------------------------------------------ consensus_9773#3 ------------------------------------------------------------ consensus_9773#2 CACTGACACAGCAACACCACAAAATGAAAAAAGGAAACGGGGAAAAATCTATACAA---- 441 consensus_9773#0 ATTCACTTGACAACAGCAACAACAACAAAAAAGAAAAAAAAGAAAAACAGAGAAAAAAAT 1046 consensus_9773#4 ------------------------------------------------------------ consensus_9773#1 ---------------------------------------------- consensus_9773#3 ---------------------------------------------- consensus_9773#2 ---------------------------------------------- consensus_9773#0 TTATACAAAAACATGAATATTATTCTCTTTTCTATTTTCGGTTAAT 1092 consensus_9773#4 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||