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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1045 fasta sequence
[GTTCCACGAACCGGAGGTCACAGTGGAAACAAACTGGTTGTCATGTCGATGATTTCTCGCCAAATTATTGCTCGTAGTTCTGCTACACTTGATGGTGCAACGCTTAAAATACATCGTGCCCATTGTAGTTATTTATATCTCTTGTCACCGATGAGGTCTGTTACACTAGATAAGTGTCGCAAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTGTCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAAGTATGGACCACAACCCGGTCGGTGAAAATTATACTCGTTCTGAAGAATCTGTTCCTAATGGT-AATCCTC-AACGGCTAACTGTCTAGATTTGAGTGCATCACTTATAACGAATACGTCCAGATACTTTGGCGACTCAGATNAAAGACGTTTAGAGAACTATATTTCCATGGCTAATAATATTTTACCAATTCCATTGCCTTCTGCTTATTTAATTGCTTTACATGAAAGGGCTGGAGCTTATCATAAGTGGCCTCAACATGTTATGAATGCAAGGTTGACCCTTGATCAATGTCATAGTTTTGGCACTGTTGTGGATCAGAGATTTCGACAATGGTTGATAGAATCAGGCAA]
[-] EMBL CD130315 [GTTCCACGAACCGGAGGTCACAGTGGAAACAAACTGGTTGTCATGTCGATGATTTCTCGCCAAATTATTGCTCGTAGTTCTGCTACACTTGATGGTGCAACGCTTAAAATACATCGTGCCCATTGTAGTTATTTATATCTCTTGTCACCGATGAGGTCTGTTACACTAGATAAGTGTCGCAAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGC ]
[+] EMBL CD093332 [ AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTGTCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAA ]
[+] EMBL CD122891 [ CTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTATCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAATGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAA ]
[-] EMBL CD187804 [ CTTTTACCTCAGGCACCCTTACGCGTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAAGTATGGACCACAACCCGGTCGGTGAAAATT TACTCGTTCT AAGAATCTGTTCCTAATGGT AATCCTCAAACGGCTAACTGTCTAGATTTGAGTGCATCAATTATAg ]
[-] EMBL CD122947 [ CTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGAT AGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAAG ]
[+] EMBL CD198256 [ CAAGGGAAACCTTAGCCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAAGTATGGACCACAACCCGGTCGGTGAAAATTATACTCGTTCTGAAGAATCTGTTCCTAATGGTAAATCCTC AACGGCTAACTGTCTAGATTTGAGTGCATCACTTATAACGAATACGTCCAGATACTTTGGCGACTCAGATN ]
[+] EMBL CD179708 [ CCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCC ]
[+] EMBL CD166366 [ ACATCCCGGTCGGTGAAAATTATACTCGTTCTGAAGAATCTGTTCCTAATGGT AATCCTCAAACGGCTAACTGTCTAGATTTGAGTGCATCACTTATAACGAATACGTCCAGATACTTTGGCGACTCAGATGAAAGACGTTTAGAGAACTATATTTCCATGGCTAATAATATTTTACCAATTCCATTGCCTTCTGCTTATTTAATTGCTTTACATGAAAGGGCTGGAGCTTATCATAAGTGGCCTCAACATGTTATGAATGCAAGGTTGACCCTTGATCAATGTCATAGTTTTGGCACTGTTGTGGATCAGAGATTTCGACAATGGTTGATAGAATCAGGCAA]
consensusID : consensus_9774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence
[ATATTCGATCACAGGTGTCTTCGAAGCATTGCTCGTATATTCTGTGACCACCGAGTCTGTTACACTAGATAAGTGTCGCAAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTATCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACACGTATATGAAACTTGTAGATCACCTGAACAAGTACCTTAGTCCAAAGTTCCGTGA]
[-] EMBL CD065464 [ATATTCGATCACAGGTGTCTTCGAAGCATTGCTCGTATATTCTGTGACCACCGAGTCTGTTACACTAGATAAGTGTCGCAAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTATCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACACGTATATGAAACTTGTAGATCACCTGAACAAGTACCTTAGTCCAAAGTTCCGTGA]
[-] EMBL CD090776 [ gcggctTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCCGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAA ]
consensusID : consensus_9774#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence
[AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTATTTTTTTCTTTACAATCCCGTCCAATCTGATTCACCTCGTACAACATGGTTTNNNNNNNNNNNNNGATTATATATAATATTCCTGGGAATATNTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATAC]
[+] EMBL CD093306 [AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTATTTTTTTCTTTACAATCCCGTCCAATCTGATTCACCTCGTACAACATGGTTTNNNNNNNNNNNNNGATTATATATAATATTCCTGGGAATATNTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 GTTCCACGAACCGGAGGTCACAGTGGAAACAAACTGGTTGTCATGTCGATGATTTCTCGC 60
consensus_9774#1 ---------------------------------------ATATTCGATCACAGGTGTCTT 21
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 CAAATTATTGCTCGTAGTTCTGCTACACTTGATGGTGCAACGCTTAAAATACATCGTGCC 120
consensus_9774#1 CGAAGCA-TTGCTCGTATATTCTGTGACCACCGAG-TCTGTTACACTAGATAAGTGTCGC 79
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 CATTGTAGTTATTTATATCTCTTGTCACCGATGAGGTCTGTTACACTAGATAAGTGTCGC 180
consensus_9774#1 AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGAC 139
consensus_9774#2 AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGAC 60
consensus_9774#0 AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGAC 240
************************************************************
consensus_9774#1 TGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTA 199
consensus_9774#2 TGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTA 120
consensus_9774#0 TGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTA 300
************************************************************
consensus_9774#1 CATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTATCAGT 259
consensus_9774#2 TTTTTTTCTTTACAATCCCGTCCAAT-CTGATTCA-CCTCGTACAACATG-GTTTNNNNN 177
consensus_9774#0 CATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTGTCAGT 360
*** ** **************** ******** **** * ** *
consensus_9774#1 GGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCA 319
consensus_9774#2 NNNNNNNNGATTATATATAATATTCCTGGGAATATNTCGGGTACAAATACTTCTACCCCA 237
consensus_9774#0 GGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCA 420
****** * **************** ************************
consensus_9774#1 GGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCT 379
consensus_9774#2 GGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCT 297
consensus_9774#0 GGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCT 480
************************************************************
consensus_9774#1 TTTCATACA-CGTATATGAAACTTGTAGATCACCTGAACAAGT---ACCTTAGTCCAAAG 435
consensus_9774#2 TTTCATAC---------------------------------------------------- 305
consensus_9774#0 TTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAA 540
********
consensus_9774#1 TTCCGTGA---------------------------------------------------- 443
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 GTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCT 600
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 CAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTC 660
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 AATATTCCACTTTTGCTTTCTACTCGAGCTGAAAGTATGGACCACAACCCGGTCGGTGAA 720
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 AATTATACTCGTTCTGAAGAATCTGTTCCTAATGGTAATCCTCAACGGCTAACTGTCTAG 780
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 ATTTGAGTGCATCACTTATAACGAATACGTCCAGATACTTTGGCGACTCAGATNAAAGAC 840
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 GTTTAGAGAACTATATTTCCATGGCTAATAATATTTTACCAATTCCATTGCCTTCTGCTT 900
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 ATTTAATTGCTTTACATGAAAGGGCTGGAGCTTATCATAAGTGGCCTCAACATGTTATGA 960
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 ATGCAAGGTTGACCCTTGATCAATGTCATAGTTTTGGCACTGTTGTGGATCAGAGATTTC 1020
consensus_9774#1 -------------------------
consensus_9774#2 -------------------------
consensus_9774#0 GACAATGGTTGATAGAATCAGGCAA 1045
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||