These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1075 fasta sequence [NNGAGAAAAGTAAATGTATTAATCAATA-TTAGAAAAATACAGCGGTGAAGAACAGAAAAAGTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTTTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA-ATAATAAGATGATATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAAT-CAAATAACCAAGCTAAATCAGAATTTTGAGAA-TCATAGTTAATGTTTAATGCTTCTGATATCAATTCAACAGAACAGGGCTCAATCAACAGAAGGTCGGCAGAGAATGGATGTTTTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAGATGCACCTCGT] [+] EMBL CD075485 [NNGAGAAAAGTTTATGTATTAATCAATA CTAGAAAAATACAGCGGTGAAGAACAGAAAAAGTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTTTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA ATAATAAGATGATATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAAT CAAATAACCAAGCTAAATCAGAATTTTGAGAA TCATAGTTAATGTTT ] [+] EMBL CD073138 [ AAATGTATTAATCAATA TTAGAAAAATACAGCGGTGAAGAACAGAAAAAGTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTTTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGT ] [+] EMBL CD073317 [ AAATGTATTAATCAATA TTAGAAAAATACAGCGGTGAAGAACAGAAAAAGTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTTTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAAT ] [-] EMBL CD078856 [ AATGTATT ATCAATATTTAGAAAAATNCAGCGGTGAAGANCAGAAAAAGTCAGAAAA TTTGTGATCTGGGACNANCAAATTAAAANCANAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAANAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTNTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA ATAATAAGATGATATTTTCAGCTGTACATCGG ] [+] EMBL CD123075 [ CCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA ATAATAAGATGATATTT ] [+] EMBL CD177687 [ ACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAANAT AT AGATGATATNTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAATNNCAATACCNNAGCT AATCAGAATTNTGAGAATTCATAG TAATGGTTAATGC ] [-] EMBL CD078675 [ TTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA ATAATAAGATGATATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAAT CAAATAACCAAGCTAAATCAGAATTTTGAGAA TCATAGTTAATGTTTAATGCTTCTGATATCAATTCAACAGAACAGGGCTCAATCAACAGAAGGTCGGCAGAGAATGGATGTTTTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAGATGCACCTCGT] [-] EMBL BG930478 [ TCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAA ] [+] EMBL CD060657 [ GACAGTAGAAGTTCAC ATAATAAGATGATATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAAT CAAATAACCAA ] consensusID : consensus_9777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 363 fasta sequence [TTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAGAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGGCCTATTCATGGGGCGCAAACGACCTTGAGGAATCCACGAAGTAACCTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGCCA] [-] EMBL CD200190 [TTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAGAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGGCCTATTCATGGGGCGCAAACGACCTTGAGGAATCCACGAAGTAACCTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGCCA] [-] EMBL CD200200 [ TTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAGAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACGCCGACTGGCTGATTGGTGAACAGCGAACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGACCTATTCATGGGGCGCAAACGACCTTGAGGAATCCACGAAGTAACCTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9777#0 NNGAGAAAAGTAAATGTATTAATCAATATTAGAAAAATACAGCGGTGAAGAACAGAAAAA 60 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 GTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTAC 120 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 AATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATC 180 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 CATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGT 240 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 TTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACA 300 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 AGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAAT 360 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 ACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGT 420 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 GTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGT 480 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 GCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGA 540 consensus_9777#1 ------------------------------------------------------------ consensus_9777#0 TAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTG 600 consensus_9777#1 ------------------------------------TTTTATAAGAATAAGGAGAATCTG 24 * * * * * * *** ** consensus_9777#0 GATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACC 660 consensus_9777#1 AATGTGATGCA------ATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGT 78 ** ****** ** ** * * * * ** **** * ****** consensus_9777#0 AAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAAATAATAAGATGA 720 consensus_9777#1 CTAATGGAGTAT-----GACCAAGAGAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGG 133 * * ***** * *** ** * * * * *** **** *** ** consensus_9777#0 TATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAATCAAATAACCAAG 780 consensus_9777#1 ATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAACAGAGTATCAAG 193 ** *** * * * * *** * ** * * **** consensus_9777#0 CTAAATCAGAATTTTGAGAATCATAGTTAATGTTTAATGCTTCTGATATCAATTCAACAG 840 consensus_9777#1 AGGAAGTAGC-CATTGGGATTACTTG--GATACACAG-ACGTATACTAGCTAGGTCACAC 249 ** ** *** ** * * * ** * * * * ** * * *** consensus_9777#0 AACAGGGCTCAATCAACAGAAGGTCGGCAGAGAATGGATGTTTTTTATAAGAATAAGGAG 900 consensus_9777#1 ATCCGGGCCTATTCAT----GGGGCGCAAACGACCTTGAGGAATCCACGAAGTAACCTTC 305 * * **** * *** ** ** * ** * * * * * consensus_9777#0 AATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGT 960 consensus_9777#1 AGTTTCAGTTTCAGTT--TGGAAAGGACAGGAGGC--TTGATGGCCTGTGTTAGTCCTGC 361 * * * * * * * ** * *** **** * *** * * *** * consensus_9777#0 CTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTA 1020 consensus_9777#1 CA---------------------------------------------------------- 363 * consensus_9777#0 AGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAGATGCACCTCGT 1075 consensus_9777#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||