cluster # 9777

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Schistosoma mansoni
cluster # 9777 cluster # 9777 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9777#0 length = 1075 sequences # 9

consensus_9777#1 length = 363 sequences # 2

consensusID : consensus_9777#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1075
fasta sequence

                              [NNGAGAAAAGTAAATGTATTAATCAATA-TTAGAAAAATACAGCGGTGAAGAACAGAAAAAGTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTTTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA-ATAATAAGATGATATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAAT-CAAATAACCAAGCTAAATCAGAATTTTGAGAA-TCATAGTTAATGTTTAATGCTTCTGATATCAATTCAACAGAACAGGGCTCAATCAACAGAAGGTCGGCAGAGAATGGATGTTTTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAGATGCACCTCGT]

[+] EMBL CD075485             [NNGAGAAAAGTTTATGTATTAATCAATA CTAGAAAAATACAGCGGTGAAGAACAGAAAAAGTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTTTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA ATAATAAGATGATATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAAT CAAATAACCAAGCTAAATCAGAATTTTGAGAA TCATAGTTAATGTTT                                                                                                                                                                                                                                                                    ]
[+] EMBL CD073138             [           AAATGTATTAATCAATA TTAGAAAAATACAGCGGTGAAGAACAGAAAAAGTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTTTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD073317             [           AAATGTATTAATCAATA TTAGAAAAATACAGCGGTGAAGAACAGAAAAAGTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTTTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD078856             [            AATGTATT ATCAATATTTAGAAAAATNCAGCGGTGAAGANCAGAAAAAGTCAGAAAA TTTGTGATCTGGGACNANCAAATTAAAANCANAATGATATTTGTGGTTACAATTATGACTGATATGAAGCATAANAACACAGGATAATTAATAGAATTTTTACAACTATCCATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGTNTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA ATAATAAGATGATATTTTCAGCTGTACATCGG                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD123075             [                                                                                                                                                                                                                                                             CCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACAAGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAATACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA ATAATAAGATGATATTT                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD177687             [                                                                                                                                                                                                                                                                                                                                                                                                               ACATCTATGACAGTTAAAACGTGTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAANAT AT AGATGATATNTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAATNNCAATACCNNAGCT AATCAGAATTNTGAGAATTCATAG TAATGGTTAATGC                                                                                                                                                                                                                                                               ]
[-] EMBL CD078675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTAAAGGACCGTAAGAAAGAACGTGCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACCAAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAA ATAATAAGATGATATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAAT CAAATAACCAAGCTAAATCAGAATTTTGAGAA TCATAGTTAATGTTTAATGCTTCTGATATCAATTCAACAGAACAGGGCTCAATCAACAGAAGGTCGGCAGAGAATGGATGTTTTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAGATGCACCTCGT]
[-] EMBL BG930478             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCCTCGTGAGTGATCGATGAGACGCCCAGGCGATAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTGGATAAGATGCACAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD060657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GACAGTAGAAGTTCAC ATAATAAGATGATATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAAT CAAATAACCAA                                                                                                                                                                                                                                                                                                         ]




>consensus_9777#0
NNGAGAAAAGTAAATGTATTAATCAATATTAGAAAAATACAGCGGTGAAGAACAGAAAAA
GTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTAC
AATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATC
CATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGT
TTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACA
AGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAAT
ACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGT
GTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGT
GCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGA
TAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTG
GATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACC
AAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAAATAATAAGATGA
TATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAATCAAATAACCAAG
CTAAATCAGAATTTTGAGAATCATAGTTAATGTTTAATGCTTCTGATATCAATTCAACAG
AACAGGGCTCAATCAACAGAAGGTCGGCAGAGAATGGATGTTTTTTATAAGAATAAGGAG
AATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGT
CTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTA
AGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAGATGCACCTCGT

consensusID : consensus_9777#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 363
fasta sequence

                              [TTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAGAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGGCCTATTCATGGGGCGCAAACGACCTTGAGGAATCCACGAAGTAACCTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGCCA]

[-] EMBL CD200190             [TTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAGAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGGCCTATTCATGGGGCGCAAACGACCTTGAGGAATCCACGAAGTAACCTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGCCA]
[-] EMBL CD200200             [ TTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAGAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACGCCGACTGGCTGATTGGTGAACAGCGAACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGACCTATTCATGGGGCGCAAACGACCTTGAGGAATCCACGAAGTAACCTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGACA]




>consensus_9777#1
TTTTATAAGAATAAGGAGAATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAAT
GTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAGAGTTAGGGGATTCTGAATTCC
AATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGA
ACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCT
AGGTCACACATCCGGGCCTATTCATGGGGCGCAAACGACCTTGAGGAATCCACGAAGTAA
CCTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTG
CCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9777#0      NNGAGAAAAGTAAATGTATTAATCAATATTAGAAAAATACAGCGGTGAAGAACAGAAAAA 60
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GTCAGAAAATTTTGTGATCTGGGACAAACAAATTAAAAACAAAATGATATTTGTGGTTAC 120
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      AATTATGACTGATATGAAGCATAAAAACACAGGATAATTAATAGAATTTTTACAACTATC 180
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      CATTTTCATAAAAAATATTGTTAATCATAGTATCTGTTATTTCATTGCGATGAAATCGGT 240
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TTGCTTTAACGACCTTGACTTGAGATCTATCCAAATTCGGCCATAAATCACAATAGGACA 300
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      AGAAAGCACGTAGTTTTGCTGGAATAGGCAACTTTTTAATAAGGCTAGCATAATTACAAT 360
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      ACTTCACTGCGTGGGATTTTTTGTAGGCTTGTCTACGAACATCTATGACAGTTAAAACGT 420
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GTCTTCTGATAGTAATTCGACAAAAATCCATAAGACTTAAAGGACCGTAAGAAAGAACGT 480
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      GCTCCTGATCACATTTATCCAACTGGTTCCTCGTGAGTGATCGATGAGACGCCCAGGCGA 540
consensus_9777#1      ------------------------------------------------------------
                                                                                  

consensus_9777#0      TAGATAAATCATGCCAACTAGTATTCCAAATGTAACTGTCGTTATTGAACAAACAATTTG 600
consensus_9777#1      ------------------------------------TTTTATAAGAATAAGGAGAATCTG 24
                                                          * *  * *    *   * *** **

consensus_9777#0      GATAAGATGCACAAGAAATATTATGAGAATTCACTAGGGAAACCCGCCCAAGAGCTAACC 660
consensus_9777#1      AATGTGATGCA------ATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGT 78
                       **  ******      **   ** *  *      * * **   ****  * ******  

consensus_9777#0      AAAGAGCAGTATTAAGTGGGCAAACAGGTCCTGACAGTAGAAGTTCAAATAATAAGATGA 720
consensus_9777#1      CTAATGGAGTAT-----GACCAAGAGAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGG 133
                        *  * *****     *  ***    **   *  * *   * *** ****  *** ** 

consensus_9777#0      TATTTTCAGCTGTACATCGGATATTATCCTCACCATACATACATGAATCAAATAACCAAG 780
consensus_9777#1      ATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAACAGAGTATCAAG 193
                        **   *** *   *    *     *             ***   * ** *  * ****

consensus_9777#0      CTAAATCAGAATTTTGAGAATCATAGTTAATGTTTAATGCTTCTGATATCAATTCAACAG 840
consensus_9777#1      AGGAAGTAGC-CATTGGGATTACTTG--GATACACAG-ACGTATACTAGCTAGGTCACAC 249
                         **  **    *** ** *  * *   **    *   * * *  ** * *    *** 

consensus_9777#0      AACAGGGCTCAATCAACAGAAGGTCGGCAGAGAATGGATGTTTTTTATAAGAATAAGGAG 900
consensus_9777#1      ATCCGGGCCTATTCAT----GGGGCGCAAACGACCTTGAGGAATCCACGAAGTAACCTTC 305
                      * * ****  * ***      ** **  *  **      *   *  *  *    *     

consensus_9777#0      AATCTGAATGTGATGCAATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGT 960
consensus_9777#1      AGTTTCAGTTTCAGTT--TGGAAAGGACAGGAGGC--TTGATGGCCTGTGTTAGTCCTGC 361
                      * * * * * * *     **  *   ***  ****   * *** *   *  ***    * 

consensus_9777#0      CTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTA 1020
consensus_9777#1      CA---------------------------------------------------------- 363
                      *                                                           

consensus_9777#0      AGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAGATGCACCTCGT 1075
consensus_9777#1      -------------------------------------------------------