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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 746 fasta sequence
[GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTC]
[+] EMBL CD117983 [GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATG ]
[-] EMBL CD147779 [ cCCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTTGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGT ]
[+] EMBL CD180990 [ GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTC]
[-] EMBL CD180691 [ ACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGCCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATTAATGACTTCCTCCTCGCT ]
consensusID : consensus_9782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 659 fasta sequence
[GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]
[+] EMBL CD180701 [GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTNTC ]
[+] EMBL CD111276 [ ATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATT ]
[-] EMBL CD155359 [ GTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGAT ]
[-] EMBL CD186688 [ GAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTNGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]
[-] EMBL CD098435 [ ATGAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]
[-] EMBL CD111048 [ GATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]
[-] EMBL CD110897 [ CCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9782#0 GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCA 60
consensus_9782#1 ------------------------------------------------------------
consensus_9782#0 GAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCA 120
consensus_9782#1 ------------------------------------------------------------
consensus_9782#0 TTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTT 180
consensus_9782#1 ------------------------------------------------------------
consensus_9782#0 GTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCG 240
consensus_9782#1 ----------------------------------------------GACCTTGAATTTCG 14
**************
consensus_9782#0 TATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTC 300
consensus_9782#1 TATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTC 74
*********************************** ************************
consensus_9782#0 TGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCC 360
consensus_9782#1 TGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCC 134
************************************************************
consensus_9782#0 ACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACG 420
consensus_9782#1 ACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACG 194
************************************************************
consensus_9782#0 TCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCA 480
consensus_9782#1 TCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCA 254
************************************************************
consensus_9782#0 GAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCG 540
consensus_9782#1 GAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCG 314
************************************************************
consensus_9782#0 TTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTT 600
consensus_9782#1 TTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTT 374
************************************************************
consensus_9782#0 TCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCAC 660
consensus_9782#1 TCACTAGGCAGATCTGCTTTGGACT--------------GTTCAACCACATCCAAGTCAC 420
************************* *********************
consensus_9782#0 CATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTA 720
consensus_9782#1 CATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTA 480
************************************************************
consensus_9782#0 ATGTTGCTTGACCAGACAAAATTTTC---------------------------------- 746
consensus_9782#1 ATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAG 540
**************************
consensus_9782#0 ------------------------------------------------------------
consensus_9782#1 TAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGC 600
consensus_9782#0 -----------------------------------------------------------
consensus_9782#1 GAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC 659
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||