These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 746 fasta sequence [GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTC] [+] EMBL CD117983 [GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATG ] [-] EMBL CD147779 [ cCCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTTGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGT ] [+] EMBL CD180990 [ GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTC] [-] EMBL CD180691 [ ACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGCCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATTAATGACTTCCTCCTCGCT ] consensusID : consensus_9782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 659 fasta sequence [GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC] [+] EMBL CD180701 [GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTNTC ] [+] EMBL CD111276 [ ATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATT ] [-] EMBL CD155359 [ GTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGAT ] [-] EMBL CD186688 [ GAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTNGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC] [-] EMBL CD098435 [ ATGAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC] [-] EMBL CD111048 [ GATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC] [-] EMBL CD110897 [ CCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9782#0 GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCA 60 consensus_9782#1 ------------------------------------------------------------ consensus_9782#0 GAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCA 120 consensus_9782#1 ------------------------------------------------------------ consensus_9782#0 TTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTT 180 consensus_9782#1 ------------------------------------------------------------ consensus_9782#0 GTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCG 240 consensus_9782#1 ----------------------------------------------GACCTTGAATTTCG 14 ************** consensus_9782#0 TATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTC 300 consensus_9782#1 TATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTC 74 *********************************** ************************ consensus_9782#0 TGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCC 360 consensus_9782#1 TGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCC 134 ************************************************************ consensus_9782#0 ACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACG 420 consensus_9782#1 ACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACG 194 ************************************************************ consensus_9782#0 TCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCA 480 consensus_9782#1 TCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCA 254 ************************************************************ consensus_9782#0 GAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCG 540 consensus_9782#1 GAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCG 314 ************************************************************ consensus_9782#0 TTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTT 600 consensus_9782#1 TTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTT 374 ************************************************************ consensus_9782#0 TCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCAC 660 consensus_9782#1 TCACTAGGCAGATCTGCTTTGGACT--------------GTTCAACCACATCCAAGTCAC 420 ************************* ********************* consensus_9782#0 CATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTA 720 consensus_9782#1 CATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTA 480 ************************************************************ consensus_9782#0 ATGTTGCTTGACCAGACAAAATTTTC---------------------------------- 746 consensus_9782#1 ATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAG 540 ************************** consensus_9782#0 ------------------------------------------------------------ consensus_9782#1 TAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGC 600 consensus_9782#0 ----------------------------------------------------------- consensus_9782#1 GAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC 659 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||