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Schistosoma mansoni
cluster # 9782 cluster # 9782       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9782#0 length = 746 sequences # 4  
consensus_9782#1 length = 659 sequences # 7  

consensusID : consensus_9782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 746
fasta sequence
                              [GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTC]

[+] EMBL CD117983             [GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD147779             [                       cCCAGGTGGATTTTCATCAGTTATTTCATCAAATCCAGAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCATTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTTGATCACTTGTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD180990             [                                                                                                                                                                                                                                  GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTC]
[-] EMBL CD180691             [                                                                                                                                                                                                                                   ACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGCCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATTAATGACTTCCTCCTCGCT                                                                                                                                                                                                         ]


>consensus_9782#0 GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCA GAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCA TTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTT GTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCG TATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTC TGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCC ACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACG TCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCA GAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCG TTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTT TCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCAC CATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTA ATGTTGCTTGACCAGACAAAATTTTC



consensusID : consensus_9782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 659
fasta sequence
                              [GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]

[+] EMBL CD180701             [GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTNTC                                                                                                                                                         ]
[+] EMBL CD111276             [                                                                                                        ATCGTGACAACTTGGATCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATT                                                                                                                                                                                        ]
[-] EMBL CD155359             [                                                                                                                                                   GTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGAT                                                                             ]
[-] EMBL CD186688             [                                                                                                                                                                                         GAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTNGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]
[-] EMBL CD098435             [                                                                                                                                                                                           ATGAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]
[-] EMBL CD111048             [                                                                                                                                                                                                                                                                       GATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]
[-] EMBL CD110897             [                                                                                                                                                                                                                                                                                          CCTCATGATTGTCTTTATCAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCACCATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTAATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAGTAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGCGAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC]


>consensus_9782#1 GACCTTGAATTTCGTATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAG TTTGTCCTTGTTTCTGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGA TCTGGCCGTTATCCACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTA CCAACGAATTAACGTCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACAT CACAGCAAAGGTCAGAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTAT CAATGACTTCCTCGTTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAG CAGGGTTTGAATTTTCACTAGGCAGATCTGCTTTGGACTGTTCAACCACATCCAAGTCAC CATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTA ATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAG TAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGC GAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9782#0      GCTTCANTAAGAGTGAACTGTTGACCAGGTGGATTTTCATCAGTTATTTCATCAAATCCA 60
consensus_9782#1      ------------------------------------------------------------
                                                                                  

consensus_9782#0      GAAGTAACGTGGCTTCTATCAGTGCCATTAGGAATACCTTCAGACCAGGTTGCTTGATCA 120
consensus_9782#1      ------------------------------------------------------------
                                                                                  

consensus_9782#0      TTGATATTTTGTGTACCGCCTTCGGCAGTGTTTGAAACATCTTGGATATCTCGATCACTT 180
consensus_9782#1      ------------------------------------------------------------
                                                                                  

consensus_9782#0      GTGGAAATTAACAGAGTAGACGTTATAGGTTCACCAGTTGACGTTGGACCTTGAATTTCG 240
consensus_9782#1      ----------------------------------------------GACCTTGAATTTCG 14
                                                                    **************

consensus_9782#0      TATGAAAATGCCTGTCCATGCATCTCTAAGATGACTTGTTCTCCAGTTTGTCCTTGTTTC 300
consensus_9782#1      TATGAAAATGCCTGTCCATGCATCTCTAAGATGACCTGTTCTCCAGTTTGTCCTTGTTTC 74
                      *********************************** ************************

consensus_9782#0      TGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCC 360
consensus_9782#1      TGATCCAAAACCTGACCTCGGGAATCCATGATCGTGACAACTTGGATCTGGCCGTTATCC 134
                      ************************************************************

consensus_9782#0      ACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACG 420
consensus_9782#1      ACTACTGCTGTTTGTTCGCTTAAAGTATACTGTTCCACATTTTCTACCAACGAATTAACG 194
                      ************************************************************

consensus_9782#0      TCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCA 480
consensus_9782#1      TCAGTTGTATCAATCTCGCTTGAGTTGATCAAAGAGTCACCCACATCACAGCAAAGGTCA 254
                      ************************************************************

consensus_9782#0      GAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCG 540
consensus_9782#1      GAAACAGTTGATTTGGCTGTCTGTGTCGCCTCATGATTGTCTTTATCAATGACTTCCTCG 314
                      ************************************************************

consensus_9782#0      TTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTT 600
consensus_9782#1      TTGCTCGATTTATGACGTTCAGGATCATCCAGTTCCGCAGGAACAGCAGGGTTTGAATTT 374
                      ************************************************************

consensus_9782#0      TCACTAGGCAGATCTGCTTTGGACTATCAATAAAAGCCTGTTCAACCACATCCAAGTCAC 660
consensus_9782#1      TCACTAGGCAGATCTGCTTTGGACT--------------GTTCAACCACATCCAAGTCAC 420
                      *************************              *********************

consensus_9782#0      CATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTA 720
consensus_9782#1      CATCAGCTATTGGAGTAAGAGTCAGGACCTGTTTGCCTTCTTCATCTACGGCATTTTGTA 480
                      ************************************************************

consensus_9782#0      ATGTTGCTTGACCAGACAAAATTTTC---------------------------------- 746
consensus_9782#1      ATGTTGCTTGACCAGACAAAATTTTCTTGGCATCCTCTGGTGTAACTAGAGCACATCCAG 540
                      **************************                                  

consensus_9782#0      ------------------------------------------------------------
consensus_9782#1      TAGCATCATCATTTTCATCCATAAATACAAGTTTGACAAGATCCTGTCCTGAATCATCGC 600
                                                                                  

consensus_9782#0      -----------------------------------------------------------
consensus_9782#1      GAATAACTTCAAAGCCATGGGCAACCAGTTCGTCAATCAGCTTGGACATGGCGAACCTC 659
                                                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)