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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1145 fasta sequence
[ATCAACTGGATCTTAACAATCATTATGGTTCTTACATTAGTATAAACTTCGTATTTGTTTTTCTTTCATTCCATCATCAAGGTGGGTCACTAAAGGTCTGAAGTTTGGTTGACATCAGGCAAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGATGAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAAAAGAATTCATCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTAAAGATTGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCG-GCCAATAGTTTCGTGGGAACA-CCATTTTGGATTGCTCCTGAAGTCATTCTAGCTATGGAAACAA-GCATATATGACGTACGAGTGGATGTTTGGTCTTTAGGAATTACATGTATTGAAATGGCTGAGTTGGAACCTCCTTACTTCAGCGCTACCAATCCAATGGCTGCACTATATCAAATTGCTTCAAATGATGCCCCACGACTAGTGGGAGGTAGCTGGTCTGATGAATTTCGGGATTTTGTACGGTTCGTTCTCCAAAAAGATATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCAAGAAAATCAAATCAGTCAAAAGTGGAAGAAAATTCTTTATGAAAGTGATTTAAATCATTCTCCATC]
[+] EMBL AI975061 [ATCAACTGGATCTTAACAATCATTATGGTTCTTACATTAGTATAAACTTCGTATTTGTTTTTCTTTCATTCCATCATCAAGGTGGGTCACTAAAGGTCTGAAGTTTGGTTGACATCAGGCAAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAAATTCTATCTCA ]
[+] EMBL BG931090 [ TCACTAAAGGTCTGAAGTCTGGTTGACATCAGGCAAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATATCTATCTCATCTTTCACATAAAAACTGTGTATTGCCC ]
[+] EMBL CD118422 [ TCTGAAGTTTGGTTGACATCAGGCAAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGATGAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAAAAGAATTCATCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTAAAGATTGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCG GCCAATAGTTTCGTGGGAACA CCATTTTGGATTGCTCCTGAAGTCATTCTAGCTATGGAAACAA GCATA ]
[+] EMBL CD179853 [ CTCTCAGGACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGAATAAATTTCTATCTCAa ]
[+] EMBL CD179921 [ CTCTCAGGACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATNTGCTCAGTCGCAGATGTTnt ]
[-] EMBL CD183636 [ ACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGATGAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAA ]
[-] EMBL CD130881 [ TGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAATCGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGATGAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAAAAGAATTCATCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTA ]
[-] EMBL CD068142 [ TCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTAAAGATTGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCG GCCAATAGTTTCGTGGGAACA CCATTTTGGATTGCTCCTGAAGTCATTCTAGCTATGG AACAAGGCATATATGACGTACGAGTGGATGTTTGGTCTTTAGGAATTACATGTATTGAAATGGCTGAGTTGGAACCTCCTTACTTCAGCGCTACCAATCCAATGGCTGCACTATATCAAATTGCTTCAAATGATGCCCCACGACTAGTGGGAGGTAGCTGGTCTGATGAATTTCGGGATTTTGTACGGTTCGTTCTCCAAAAAGATATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCAAGAAAATCAAATCAGTCAAAAGTGGAAGAAAATTCTTTATGAAAGTGATTTAAATCATTCTCCATC]
[-] EMBL CD121130 [ GAGTAAAGAAGGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCGAGCCAATAGTTTCGTGGGAACACCCATTTTGGATTGCTCCTGAAGTC ]
consensusID : consensus_9784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 481 fasta sequence
[CATTTAGTTAGATTTGTATCATCATGACACCGAATCTTATTTAGACTCAAAGTGGAAAGTGACTAAAATTTGAGCATCGATTCTGTTTCTTAACATCATTTTGTGTACATTTTTACTGATTTTGTATGCTCCACTAGTTTTCTACGATTCCCATTATTAGGTTTTGTGCAGTTTTATTCTCATGATAGTTATGGTCTGATCTTCAATAGATCATTTTTTTCTTCATATAGTTAAAATTTTGGTAGAAACTGACAGTAATAAATAACCGTCATCATTCAACTCACATTAGTAATGTTCGATGTCAAAATAAATGCGGTGTCTTATTTTATTTTGTAGATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCAAGAAAATCAAATCAGTCAAAAGTAAA]
[-] EMBL CD089463 [CATTTAGTTAGATTTGTATCATCATGACACCGAATCTTATTTAGACTCAAAGTGGAAAGTGACTAAAATTTGAGCATCGATTCTGTTTCTTAACATCATTTTGTGTACATTTTTACTGATTTTGTATGCTCCACTAGTTTTCTACGATTCCCATTATTAGGTTTTGTGCAGTTTTATTCTCATGATAGTTATGGTCTGATCTTCAATAGATCATTTTTTTCTTCATATAGTTAAAATTTTGGTAGAAACTGACAGTAATAAATAACCGTCATCATTCAACTCACATTAGTAATGTTCGATGTCAAAATAAATGCGGTGTCTTATTTTATTTTGTAGATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCAAGAAAATCAAA ]
[-] EMBL CD089470 [ GTTTTATTCTCATGATAGTTATGGTCTGATCTTCAATAGATCATTTTTTTCTTCATATAGTTAAAATTTTGGTAGAAACTGACAGTAATAAATAACCGTCATCATTCAACTCACATTAGTAATGTTCGATGTCAAAATAAATGCGGTGTCTTATTTTATTTTGTAGATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGATAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTACCTGCCCAAGAAAATCAAATCAGTCAAAAGTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9784#0 ATCAACTGGATCTTAACAATCATTATGGTTCTTACATTAGTATAAACTTCGTATTTGTTT 60
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 TTCTTTCATTCCATCATCAAGGTGGGTCACTAAAGGTCTGAAGTTTGGTTGACATCAGGC 120
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 AAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACT 180
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 GTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTT 240
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 ACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGT 300
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 ACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCT 360
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 GAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAA 420
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 AACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAA 480
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 TACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGAT 540
consensus_9784#1 ------------------------------------------------------------
consensus_9784#0 GAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAAA 600
consensus_9784#1 --------------CATTTAGTTAGATTTGTATCATCATGAC--ACCGAATCTT---ATT 41
* ** ** ** * * ** **** * ** * *
consensus_9784#0 AGAATTCATCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTAAAG 660
consensus_9784#1 TAGACTCAAAGTGG----AAAGTGACTAAAATTTGAG-CATCGATTCTGTTTCTTAACAT 96
* *** * * **** **** **** * ** ** **** * * *
consensus_9784#0 ATTGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCGGCCAATAGTTTCGTGGGAACACCA 720
consensus_9784#1 CATTTTGTGTACATTTTTACTGATTTTGTATGCT---CCACTAGTTTTCTACGATTCCCA 153
* ** * * * ** ****** * *** ****** * ** ***
consensus_9784#0 TT-TTGGATTGCTCCTGAAGTCATTCTAGCTATGGAAACAAGCATATATGACGTACGAGT 779
consensus_9784#1 TTATTAGGTTTTGTGCAGTTTTATTCTCATGATAGTTATGGTC-----TGATCTTCAA-T 207
** ** * ** * ***** ** * * * *** * * * *
consensus_9784#0 GGATGTTTGGTCTTTAGGAATTACATGTATTGAAATGGCTGAGTTGGAACCTCCTTACTT 839
consensus_9784#1 AGATCATTTTTTTCT-----TCATATA-GTTAAAAT--TTTGGTAGAAACT--------- 250
*** ** * * * * * ** ** **** * ** * ***
consensus_9784#0 CAGCGCTACCAATCCAATGGCTGCACTATATCAAATTGCTTCAAATGATGCCCCACGACT 899
consensus_9784#1 -GACAGTAATAA----ATAACCGTCATCATTCAACTCACATTAG-TAATGTTCGATG--- 301
* ** ** ** * * * **** * * * * * *** * * *
consensus_9784#0 AGTGGGAGGTAGCTGGTCTGATGAATTTCGGGATTTTGTACGGTTCGTTCTCCAAAAAGA 959
consensus_9784#1 ----------------TCAAAATAAATGCGGTGTCTTAT----TTTATTTTGTAGA---- 337
** * ** * *** * ** * ** ** * * *
consensus_9784#0 TATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTT 1019
consensus_9784#1 --TGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTT 395
**********************************************************
consensus_9784#0 TCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCA 1079
consensus_9784#1 TCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCA 455
************************************************************
consensus_9784#0 AGAAAATCAAATCAGTCAAAAGTGGAAGAAAATTCTTTATGAAAGTGATTTAAATCATTC 1139
consensus_9784#1 AGAAAATCAAATCAGTCAAAAGTAAA---------------------------------- 481
*********************** *
consensus_9784#0 TCCATC 1145
consensus_9784#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||