cluster # 9785

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Schistosoma mansoni
cluster # 9785 cluster # 9785 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9785#0 length = 514 sequences # 2

consensus_9785#1 length = 471 sequences # 9

consensusID : consensus_9785#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 514
fasta sequence

                              [GAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTGAGTTGTCTGTGTATGTGATTTTCTGTTCATTCCGTAATGCTAACTTAAATAGATACTTACGCCTGTTACCCTTCGTGAAGGAGTATAGGCTGCCCACCAGGACTCTCCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGCTACCCATCCTTTTGATACCTGTTTTCAATTGCCGACACAGTGTGTTCTTTGGTCTTCCTCTTTTCCGCTTCTCGTCAGAATTTCATGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTCCGCAATATGTTTCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGATATTGCTTGACAGTTATTTTGAGTTCCATTTGTTCTTCAACTGATGGAATGCGCCCCTTGCTTTGCCAATTCTCGCCTTTACATCTGCATCTAGAACCTCCCTTG]

[+] EMBL CD119076             [GAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTGAGTTGTCTGTGTATGTGATTTTCTGTTCATTCCGTAATGCTAACTTAAATAGATACTTACGCCTGTTACCCTTCGTGAAGGAGTATAGGCTGCCCACCAGGACTCTCCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGCTACCCATCCTTTTGATACCTGTTTTCAATTGCCGACACAGTGTGTTCTTTGGTCTTCCTCTTTTCCGCTTCTCGTCAGAATTTCATGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTCCGCAATATGTTTCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGATATTGCTTGACAGTTATTTTGAGTTCCAT                                                                            ]
[-] EMBL CD118916             [                                                                                                ATGTGATTTTCTGTTCATTCCGTAATGCTAACTTAAATAGATACTTACGCCTGTTACCCTTCGTGAAGGAGTATAGGCTGCCCACCAGGACTCTCCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGCTACCCATCCTTTTGATACCTGTTTTCAATGACCGACACAGTGTGTTCTTTGGTCTTCCTCTTTTCCGCTTCTCGTCAGAATTTCATGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTCCGCAATATCTTTCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGATATTGCTTGACAGTTATTTTGAGTTCCATTTGTTCTTCAACTGATGGAATGCGCCCCTTGCTTTGCCAATTCTCGCCTTTACATCTGCATCTAGAACCTCCCTTG]




>consensus_9785#0
GAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCAC
TTTAAAATTTGTGAGGGCAAAGTGAGTTGTCTGTGTATGTGATTTTCTGTTCATTCCGTA
ATGCTAACTTAAATAGATACTTACGCCTGTTACCCTTCGTGAAGGAGTATAGGCTGCCCA
CCAGGACTCTCCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGCTACCCATCCTTTT
GATACCTGTTTTCAATTGCCGACACAGTGTGTTCTTTGGTCTTCCTCTTTTCCGCTTCTC
GTCAGAATTTCATGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTCCGCAATATGTT
TCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGATATTGCTTGAC
AGTTATTTTGAGTTCCATTTGTTCTTCAACTGATGGAATGCGCCCCTTGCTTTGCCAATT
CTCGCCTTTACATCTGCATCTAGAACCTCCCTTG

consensusID : consensus_9785#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 471
fasta sequence

                              [TGCAAGCCGAAAAGAGTGCTAGTGAGAAAGTAATGAAGCGAAAAGGCGTAAGCTAACGATTAAAGGAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA-CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAAAAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATCAGT-AATTTTAGACAATAAAACTGCAAATGCATAATACTTGATCATTTGGTTTCTCTTTATTATTCCTAATATATATTATTATCTGCAAATAATCAAACAAATAAATTATTT]

[+] EMBL CD077403             [TGCAAGCCGAAAAGAGTGCTAGTGAGAAAGTAATGAAGCGAAAAGGCGTAAGCTAACGATTAAAGGAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATANATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAAAAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATCAGTAAATTTTAGACAATAAAACTGCAAATGCATAATACTTGATCATTTGGTTTCTCTTTATTATTCCTAATATATATTATTATCTGCAAATAATCAAACAAATAAATTATTT]
[+] EMBL CD136202             [                                                                                            ATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAGCACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTT                                                                                                                                                                                                        ]
[+] EMBL CD136227             [                                                                                                              GAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGCCGATCAGAAATTGAGCCGCAGATTCAAAAGCTAC CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATT                                                                                                                                                                                               ]
[-] EMBL CD136355             [                                                                                                               AGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCCAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAA                                                                                                                                                                                                 ]
[+] EMBL CD061262             [                                                                                                                 CGTGAGCATCACTTTAAAACTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAACCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACCGCTACACAAAAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATCAGT AATTTTAGACAATA                                                                                              ]
[+] EMBL CD181671             [                                                                                                                         TCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTG                                                                                                                                                                                                          ]
[-] EMBL CD193852             [                                                                                                                                     TTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAAT                                                                                                                                                                                                ]
[+] EMBL CD145751             [                                                                                                                                                  GTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAAAAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATCAGT AATTTTAGACAATAAAACTGCAA                                                                                     ]
[-] EMBL AI740413             [                                                                                                                                                                    ggAATTGAGTCGCAGATTCAAAAGCTAACCCCCAGAAATAGTCAATACTCAAAATGCCTCTGGGGGGCTTCCTAAAGAAGGCCCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACCCAAAAATTTTCCCAATGGAATAACGGGTTAACCAACAGTWTTCTAAATTTGATGTTTTACGAATCAGT AATTTTAGACAATAAAACTGCAAATGCATAATACTTGATCATTTGGTTTCTCTTTATTATTCCTAATATATATTATTATCTGCAAATAATCAAACAAATAAATTAT  ]




>consensus_9785#1
TGCAAGCCGAAAAGAGTGCTAGTGAGAAAGTAATGAAGCGAAAAGGCGTAAGCTAACGAT
TAAAGGAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGC
ATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGA
TTCAAAAGCTAACCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAG
AAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAAAA
ATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATC
AGTAATTTTAGACAATAAAACTGCAAATGCATAATACTTGATCATTTGGTTTCTCTTTAT
TATTCCTAATATATATTATTATCTGCAAATAATCAAACAAATAAATTATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9785#0      ------------------------------------------------------------
consensus_9785#1      TGCAAGCCGAAAAGAGTGCTAGTGAGAAAGTAATGAAGCGAAAAGGCGTAAGCTAACGAT 60
                                                                                  

consensus_9785#0      -----GAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGC 55
consensus_9785#1      TAAAGGAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGC 120
                           *******************************************************

consensus_9785#0      ATCACTTTAAAATTTGTGAGGGCAAAGTGAGTTGTCTGTGTATGTGATTTTCTGTT-CAT 114
consensus_9785#1      ATCACTTTAAAATTTGTGAGGGCAAAGT-ACTTGGTCGTCGATCAGAAATTGAGTCGCAG 179
                      **************************** * ***   **  **  **  **  **  ** 

consensus_9785#0      TCCGTAATGCTAACTTAAATAGATACTTACGCCTGTTAC--CCTTCGTGAAGGAGTATAG 172
consensus_9785#1      ATTCAAAAGCTAACCCAAG-AAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAA 238
                           ** ******  **  * *** * *   **   **  ***  *****     *** 

consensus_9785#0      GCTGCCCACCAGGACTCT-CCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGC-TAC 230
consensus_9785#1      AGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAA 298
                            * ***  * * *   *******  ***  ** * * **   * *** * *  * 

consensus_9785#0      CCATCCTTTTGATACCTGTTTTCAATTGCCGACACAGTGTGTTCTTTGGTCTTCCTCTTT 290
consensus_9785#1      AAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAA 358
                        **  *    **            *  ** ***   *      **** * **   *   

consensus_9785#0      TCCGCTTCTCGTCAGAATTTCA-TGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTC 349
consensus_9785#1      TCAGTAATTTTAGACAATAAAACTGCAAATGCATAATACTTGAT--CATTTGGTT-TCTC 415
                      ** *    *    * ***   * **  * *** ** * * ****    ******  * **

consensus_9785#0      CGCAATATGTTTCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGA 409
consensus_9785#1      TTTATTATTCCTAATATATATT-ATTATCTGCAAATAATCAAACAAATAAATTATTT--- 471
                         * ***   * **  *  *  *   ***  *  *    *   **     * ****   

consensus_9785#0      TATTGCTTGACAGTTATTTTGAGTTCCATTTGTTCTTCAACTGATGGAATGCGCCCCTTG 469
consensus_9785#1      ------------------------------------------------------------
                                                                                  

consensus_9785#0      CTTTGCCAATTCTCGCCTTTACATCTGCATCTAGAACCTCCCTTG 514
consensus_9785#1      ---------------------------------------------