These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1284 fasta sequence [AACCAATTTCGTTTTTGATGTTTGTGGAGACTGTGTATTTATTTGATCATGGAAAATGATAGCGGGATTCGATAAATTGGTGGAACTGGAATCAGATGTACTCATCTTACTGGGAGATACAGTAGTAGTTGAAGTTGTTGGAGTCTCTATCAAAGATGGTGGGTTTGAAAGGTTTTGAGATTTATGAATAAGTACACGTGGAGTTGAGCAGAGAGTAGAACTCATGAGCAAACTGCCAGATACAGAAGTCGGTGCAGGAAAATTTATAGCAGTCACACAATGTGATCTTTGAGACTGGAGTGGCAACGTAACATTTGTTGTAGGAGTTTCAAACACTAGAGGGCAGGCACTTGAATTCACTGTTGCAGTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGCAAGTGTTGGTTGTATGTGGTTTGGAGCCTGTGGAGATATGACAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGAAGCTGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGACGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAATTGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTCTCTAGCTAATTTACCTGCTGGCAAAACTTGGTTGATATCGTTGTCAATATCCATATATAACAGGATGAAGTCACTTCAGTTGGACGTCCATTATTTATAATCCAAGAGTCCGTAAGCCAAGGTGTATATATGGCAGAGCGACGTCAACATATCAATACTTTGGACTATCAACAGTATGAACGCCAATCGTTGTATGGGTCTTGACAACACAAATTTATGTTACAAGCGAAACCCCGTCCACAAACGCCAAAACCGAAAGCATCTTTGACCTAC] [+] EMBL CD096368 [AACCAATTTCGTTTTTGATGTTTGTGGAGACTGTGTATTTATTTGATCATGGAAAATGATAGCGGGATTCGATAAATTGGTGGAACTGGAATCAGATGTACTCATCTTACTGGGAGATACAGTAGTAGTTGAAGTTGTTGGAGTCTCTATCAAAGATGGTGGGTTTGAAAGGTTTTGAGATTTATGAATAAGTACACGTGGAGTTGAGCAGAGAGTAGAACTCATGAGCAAACTGCCAGATACAGAAGTCGGTGCAGGAAAATTTATAGCAGTCACACAATGTGATCTTTGAGACTGGAGTGGCAACGTAACATTTGTTGTAGGAGTTTCAAACACTAGAGGGCAGGCACTTGAATTCACTGTTGCAGTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGCAAGTGTTGGTTGTATGTGGTTTGGAGCCTGTGGAGATATGACAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGA ] [+] EMBL CD096662 [AACCAATTTCGTTTTTGATGTTTGTGGAGACTGTGTATTTATTTGATCATGGAAAATGATAGCGGGATTCGATAAATTGGTGGAACTGGAATCAGATGTACTCATCTTACTGGGAGATACAGTAGTAGTTGAAGTTGTTGGAGTCTCTATCAAAGATGGTGGGTTTGAAAGGTTTTGAGATTTATGAATAAGTACACGTGGAGTTGAGCAGAGAGTAGAACTCATGAGCAAACTGCCAGATACAGAAGTCGGTGCAGGAAAATTTATAGCAGTCACACAATGTGATCTTTGAGACTGGAGTGGCAACGTAACATTTGTTGTAGGAGTTTCAAACACTAGAGGGCAGGCACTTGAATTCACTGTTGCAGTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGCAAGTGTTGGTTGTATGTGGTTTGGAGCCTGTGGAGATATGACAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGA ] [+] EMBL BG930202 [ GTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGCAAGTGTTGGTTGTATGTGGTTTGGA ] [+] EMBL CD184746 [ CAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGAAGCTGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGACGCTAAGCAATACA ] [+] EMBL CD184732 [ CAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGAAGCTGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGACGCTAAGCAAT ] [-] EMBL CD183974 [ GCTGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGT ] [+] EMBL CD148726 [ TGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTT ] [-] EMBL CD184050 [ CTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCCAAAGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGT ] [-] EMBL CD128021 [ TAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGACGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAATTGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTCTCTAGCTAATTTACCTGCTGGCAAAACTTGGTTGATATCGTTGTCAATATCCATATATAACAGGATGAAGTCACTTCAGTTGGACGTCCATTATTTATAATCCAAGAGTCCGTAAGCCAAGGTGTATATATGGCAGAGCGACGTCAACATATCAATACTTTGGACTATCAACAGTATGAACGCCAATCGTTGTATGGGTCTTGACAACACAAATTTATGTTACAAGCGAAACCCCGTCCACAAACGCCAAAACCGAAAGCATCTTTGACCTAC] consensusID : consensus_9792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [GATAATGCAAACTATTATTATCAGAGGGTTTTTTTGTGGAGATTTCAGTATTTTCATAGTTGAAAGCATGGTAAGTCCTGGGTTCGAATCTCGTGAGGCGGTATCATGGATGCGCATTGCTGAAGAGTTCCACAATATAGAACGAAACGACCGTCTAGTACTTCCAGTTTTTTCTTGGTGGTCTAGCTTAGTCTACGCGACATTGAATACACCGTGTGACCGTTCAACGCTTTCAATTAAGTCCCAATCCGTTTAGTAATGGACGTTCCGTCAAAAATATTGCTCTCTACTCCATTAGTTGCTTCATTAATCAATAAAAACTGCTCCACATCCCCGTCAGCAGCTTCTGTTGTCATAT] [+] EMBL CD148334 [GATAATGCAAACTATTATTATCAGAGGGTTTTTTTGTGGAGATTTCAGTATTTTCATAGTTGAAAGCATGGTAAGTCCTGGGTTCGAATCTCGTGAGGCGGTATCATGGATGCGCATTGCTGAAGAGTTCCACAATATAGAACGAAACGACCGTCTAGTACTTCCAGTTTTTTCTTGGTGGTCTAGCTTAGTCTACGCGACATTGAATACACCGTGTGACCGTTCAACGCTTTCAATTAAGTCCCAATCCGTTTAGTAATGGACGTTCCGTCAAAAATATTGCTCTCTACTCCATTAGTTGCTTCATTAATCAATAAAAACTGCTCCACATCCCCGTCAGCAGCTTCTGTTGTCATAT] consensusID : consensus_9792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [TGTAATGGTGTCGGTGCACTTGATGTAGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGTCGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAATTGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTAGGACTGAGAAAA] [-] EMBL CD143134 [TGTAATGGTGTCGGTGCACTTGATGTAGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGTCGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAATTGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTAGGACTGAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9792#0 AACCAATTTCGTTTTTGATGTTTGTGGAGACTGTGTATTTATTTGATCATGGAAAATGAT 60 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 AGCGGGATTCGATAAATTGGTGGAACTGGAATCAGATGTACTCATCTTACTGGGAGATAC 120 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 AGTAGTAGTTGAAGTTGTTGGAGTCTCTATCAAAGATGGTGGGTTTGAAAGGTTTTGAGA 180 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 TTTATGAATAAGTACACGTGGAGTTGAGCAGAGAGTAGAACTCATGAGCAAACTGCCAGA 240 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 TACAGAAGTCGGTGCAGGAAAATTTATAGCAGTCACACAATGTGATCTTTGAGACTGGAG 300 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 TGGCAACGTAACATTTGTTGTAGGAGTTTCAAACACTAGAGGGCAGGCACTTGAATTCAC 360 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 TGTTGCAGTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGC 420 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 AAGTGTTGGTTGTATGTGGTTTGGAGCCTGTGGAGATATGACAACAGAAGCTACTGACGG 480 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 CGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGAAGCTGTCGTAAC 540 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 ACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGC 600 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 AGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGA 660 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------GATAAT 6 consensus_9792#0 GCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGG 720 consensus_9792#2 ----------------------------TGTAATGGTGTCGGTGCACTTGATGTAGACGG 32 consensus_9792#1 GCAAACTATTATTATCAGAGGGTTTTTTTGTGGAGATTTCAGTA---TTTTCATAGTTGA 63 *** * * ** ** ** * * * consensus_9792#0 AGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTA-GAATTAATGG 779 consensus_9792#2 AGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTA-GAATTAATGG 91 consensus_9792#1 AAGCATGGTAAGTCCTGGGTTCGAATCTCGTGAGGCGGTATCATGGATGCGCATTGCTGA 123 * *** *** * * * * * * * * * ** * * * *** ** consensus_9792#0 GAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGG 839 consensus_9792#2 GAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGG 151 consensus_9792#1 AGAGTTCCAC-AATATAGA-ACGAAACGACCGTCTAGTACTTCCAGTTTTTTCTTGGTGG 181 * ** ** *** * * * * ** * ** * * *** consensus_9792#0 CC--ACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGAT-TTATCAGACTAG 896 consensus_9792#2 CC--ACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGAT-TTATCAGACTAG 208 consensus_9792#1 TCTAGCTTAGTCTACGCGACATTGAATACACCGTGTGACCGTTCAACGCTTTCAATTAAG 241 * * * * * * * ** ** * * *** * * *** ** consensus_9792#0 ACAAAGGTTGCTGGACGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAAT 956 consensus_9792#2 ACAAAGGTTGCTGGTCGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAAT 268 consensus_9792#1 TCCCAATCCGTTTAGTAATGGACGTTCC--GTCAAAAATATTGCTCTCTACTCCATTAGT 299 * * * * * * * * ** *** ** * ** * * ** * * consensus_9792#0 TGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTCTCTAG 1016 consensus_9792#2 TGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTA--GGA 326 consensus_9792#1 TGCTTCATTAATCAATAAAAACTGC--TCCACATCCCCGTCAGCAGCTTCTGTTGTCATA 357 ** * * **** * * ** ** ** * * * *** consensus_9792#0 CTAATTTACCTGCTGGCAAAACTTGGTTGATATCGTTGTCAATATCCATATATAACAGGA 1076 consensus_9792#2 CTGAGAAAA--------------------------------------------------- 335 consensus_9792#1 T----------------------------------------------------------- 358 consensus_9792#0 TGAAGTCACTTCAGTTGGACGTCCATTATTTATAATCCAAGAGTCCGTAAGCCAAGGTGT 1136 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 ATATATGGCAGAGCGACGTCAACATATCAATACTTTGGACTATCAACAGTATGAACGCCA 1196 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 ATCGTTGTATGGGTCTTGACAACACAAATTTATGTTACAAGCGAAACCCCGTCCACAAAC 1256 consensus_9792#2 ------------------------------------------------------------ consensus_9792#1 ------------------------------------------------------------ consensus_9792#0 GCCAAAACCGAAAGCATCTTTGACCTAC 1284 consensus_9792#2 ---------------------------- consensus_9792#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||