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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1644 fasta sequence
[CGAAAGTTTCAATTTACTTGTATGAAGAATTAATGAAACTGGGAATGAATGAACTTTTACCGAAAAAAAGCCCGTTACCAACAGACCTTTATATGATTTCCTACACTAGTGGAAGTACTGGTTTGCCTAAAGGAGTTCTGATTAGTCACAAGGAAGTTACACATACCGCAATTTCGCTTCATGAATCTATTGAATTCAAGTTTGTCAATTCTAATTCAGTTACATCTCTCATATCTCCCACTGTCCACATATTATGGAACAAATAGCATTGTTGTCTCATATTCTAATGGGAGCTTCTTCCGGATTTCTAACAGAATCTATTGATCGTCTACTGGATGATATTGAAATTTTGAGACCAACTTCACTGGTTGTAGTTCCACGTGTGCTTTCTCGTTTGTACACAAAATATCAAGATGCATTGGGTGATTCCGCAATGAGAAAGCGTCTTTATAATTATATTGTAAAGAAGAAATTAGCTGAACAAAAACGTGGAAAATTTCATCATCGAAGCGTTTTGGACACAATGTTGTTTGGTAAACTTAGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCCAGAACTCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAACAACGGAAACAATGGGAAGCATCACTTTAACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGGTGGTGTCGTTTATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGTATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTTTAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAATCATAAAAAACTTTCGGATTCTGAACTTTGCCGAAACGAAACTGTCAATAAATTTGTTTTGGAAAAAATGAATGCTGTAGCAACACAAAAACTTTTGAAGGGTTTCGAAAAGGTCCAGGCAATTTACTTGACAGACGAGGCGTTTACGGTAGACAATGGCTTATTGACTCCAACAATGAAACTATCACGTAATAAAGCTCGAAATTATTTTTCAAAAACAATAGCTAGTTTATACACACAGCATGAGCTTAATTCTTCTTCAACTTAACATTTGTGATCATTCTCAACTTACAATGTGTACGTGTGAAATGGGTTCGTTTGAACTTAATATTCTTCGTAGATGGTATTCTGTGAACTATTCTGATTTCTCCATGTATTCCACANAAATCGCTTTCTTTATTTAATAAGAAACATTNNAGTATTGTTTAAATACATGGNAAGCGTCTTTACAATGGTATATTATGATATCTACTCATCTTAGCATGCGCATTAAAAATAAATATT]
[+] EMBL CD163724 [CGAAAGTTTCAATTTACTTGTATGAAGAATTAATGAAACTGGGAATGAATGAACTTTTACCGAAAAAAAGCCCGTTACCAACAGACCTTTATATGATTTCCTACACTAGTGGAAGTACTGGTTTGCCTAAAGGAGTTCTGATTAGTCACAAGGAAGTTACACATACCGCAATTTCGCTTCATGAATCTATTGAATTCAAGTTTGTCAATTCTAATTCAGTTACATCTCTCATATCTCCCACTGTCCACATATTATGGAACAAATAGCATTGTTGTCTCATATTCTAATGGGAGCTTCTTCCGGATTTCTAACAGAATCTATTGATCGTCTACTGGATGATATTGAAATTTTGAGACCAACTTCACTGGTTGTAGTTCCACGTGTGCTTTCTC ]
[-] EMBL CD112752 [ TGGGAGCTTCTTCTGGATTTCTAACAGAATCTATTGATCGCCTACTGGATGATATTGAAATTTTGAGACCAACTTCACTGGTTGTAGTTCCACGTGTGCTTTCTCGTTTGTACACAAAATATCAAGATGCATTGGGTGATTCCGCAATGAGAAAGCGTCTTTATAATTATATTGTAAAGAAGAAATTAGCTGAACAAAAACGTGGAAAATTTCATCATCGAAGCGTTTTGGACACAATGTTGTTTGGTAAACTTAGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCCAGAACTCTCAAGGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAACAACGGAAACAATGGGAAGCATCACTTTGACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGGTGGT ]
[-] EMBL CD140980 [ aanAGCGTCTTTATAATTATATTGTAAAGAAGAAATTAGCTGAACAAAAACGTGGAAAATTTTATCATCGAAGCGTTTTGGACACAATGTTGTTTGGTAAACTTAGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCCAGAACTCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAGCAACGGAAGCAATCGGATGCATCACTTTAACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGGTGGTGTCGTTTATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGTA ]
[-] EMBL CD097489 [ AGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCCAGAACTCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAGCAACGGAAGCAATCGGATGCACCACTTTAACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGGTGGTGTCGTTTATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGTATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTTTAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATT ]
[-] EMBL CD097909 [ TCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAACAACGGAAACAATGGGAAGCATCACTTTAACATCGGTCGGAGAGTACCGTTGAGGTACTGTCGGTGGTGTCCTATATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGTATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTTTAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATAGTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAA ]
[-] EMBL CD141665 [ cnCAGATTT GATTTGGTTGTATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTTTAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACcg ]
[+] EMBL CD160673 [ AGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAATCATAAAAAACTTTC ]
[+] EMBL CD080606 [ gaggGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAATCATAAAAAACTTTCGGATTCTGAACTTTGCCGAAACGAAACTGTCAATAAATTTGTTTTGGAAAAAATGAATGCTGTAGCAACACAAAAACTTTTGAAGGGTTTCGAAAAGGTCCAGGCAATTTACTTGACAGACGAGGCGTTTACGGTAGACAATGGCTTATTGACTCCAACAATGAAACTATCACGTAATAAAGCTCGAAATTATTTTTCAAAAACAATAGCTAGTTTATACACACAGCATGAGCTTAATTCTTCTTCAACTTAACATTTGTGATCATTCTCAACTTACAATGTGTACGTGTGAAATGGGTTCGTTTGAACTTAATATTCTTCGTAGATGGTATTCTGTGAACTATTCTGATTTCTCCATGTATTCCACANAAATCGCTTTCTTTATTTAATAAGAAACATTNNAGTATTGTTTAAATACATGGNAAGCGTCTTTACAATGGTATATTATGATATCTACTCATCTTAGCATGCGCATTAAAAATAAATATT]
[+] EMBL CD145488 [ AGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAG ]
[+] EMBL CD059302 [ nTTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAATCATAAAAAACTTTCGGATTCTGAACTNTGCCGAAACGAAACTGTCAATAAATNTGTTTTGGCAAAAATGAATGCTGTAGCAACACAAAAACTTTTGAAGGGTTTCGAAAAGGTCC ]
consensusID : consensus_9793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence
[TGCTAAGATGAGTAGATATCATAAATAATACATTGTAAAAGACGCTTCCAATGTTATTTAAACAAATACTTAATGTTTCTTATTAAATAAAGAAAGCGATTTTTGTGGAATAC]
[+] EMBL AI067085 [TGCTAAGATGAGTAGATATCATAAATAATACATTGTAAAAGACGCTTCCAATGTTATTTAAACAAATACTTAATGTTTCTTATTAAATAAAGAAAGCGATTTTTGTGGAATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9793#0 CGAAAGTTTCAATTTACTTGTATGAAGAATTAATGAAACTGGGAATGAATGAACTTTTAC 60
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 CGAAAAAAAGCCCGTTACCAACAGACCTTTATATGATTTCCTACACTAGTGGAAGTACTG 120
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 GTTTGCCTAAAGGAGTTCTGATTAGTCACAAGGAAGTTACACATACCGCAATTTCGCTTC 180
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 ATGAATCTATTGAATTCAAGTTTGTCAATTCTAATTCAGTTACATCTCTCATATCTCCCA 240
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 CTGTCCACATATTATGGAACAAATAGCATTGTTGTCTCATATTCTAATGGGAGCTTCTTC 300
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 CGGATTTCTAACAGAATCTATTGATCGTCTACTGGATGATATTGAAATTTTGAGACCAAC 360
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 TTCACTGGTTGTAGTTCCACGTGTGCTTTCTCGTTTGTACACAAAATATCAAGATGCATT 420
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 GGGTGATTCCGCAATGAGAAAGCGTCTTTATAATTATATTGTAAAGAAGAAATTAGCTGA 480
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 ACAAAAACGTGGAAAATTTCATCATCGAAGCGTTTTGGACACAATGTTGTTTGGTAAACT 540
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 TAGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCC 600
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 AGAACTCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAACAAC 660
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 GGAAACAATGGGAAGCATCACTTTAACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGG 720
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 TGGTGTCGTTTATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGT 780
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 ATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTT 840
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 TAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGA 900
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 TATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATT 960
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 CAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTG 1020
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 CAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGT 1080
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 AGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAA 1140
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 TCATAAAAAACTTTCGGATTCTGAACTTTGCCGAAACGAAACTGTCAATAAATTTGTTTT 1200
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 GGAAAAAATGAATGCTGTAGCAACACAAAAACTTTTGAAGGGTTTCGAAAAGGTCCAGGC 1260
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 AATTTACTTGACAGACGAGGCGTTTACGGTAGACAATGGCTTATTGACTCCAACAATGAA 1320
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 ACTATCACGTAATAAAGCTCGAAATTATTTTTCAAAAACAATAGCTAGTTTATACACACA 1380
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 GCATGAGCTTAATTCTTCTTCAACTTAACATTTGTGATCATTCTCAACTTACAATGTGTA 1440
consensus_9793#1 ------------------------------------------------------------
consensus_9793#0 CGTGTGAAATGGGTTCGTTTGAACTTAATATTCTTCGTAGATGGTATTCTGTGAACTATT 1500
consensus_9793#1 ----------------TGCTAAGATGAGTAGATATCATAAATAATACATTGTAAAAGACG 44
* * * * ** ** ** ** ** *** ** *
consensus_9793#0 CTGATTTCTCCATGTATTCCACANAAATCGCTTTCTTTATTTAATAAG-AAACATTNNAG 1559
consensus_9793#1 CT-----TCCAATGTTATTTAAACAAATACTTAATGTTTCTTATTAAATAAAGAAAGCGA 99
** * **** * * * **** * ** *** *** *** *
consensus_9793#0 TATTGTTTAAATACATGGNAAGCGTCTTTACAATGGTATATTATGATATCTACTCATCTT 1619
consensus_9793#1 TTTTTGTGGAATAC---------------------------------------------- 113
* ** * *****
consensus_9793#0 AGCATGCGCATTAAAAATAAATATT 1644
consensus_9793#1 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||