These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 866 fasta sequence [GGCCAAAAATTTGGCACGAGGTGTAGATGACCTACGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAACCAGAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG-AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC-TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAAT-AATTAATTAGTGA] [+] EMBL CD079512 [GGCCAAAAATTTGGCACGAGGTGTAGATGACCTACGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAACCAGAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAANATGGTGTACTGCAATCATACCATCGANTAGAGAAGGAAATATAAAC TATTACTATAGTTNTTGTCTCCGTTAATTTTTTGATTGGTGTATAGTGAACTTTGTCAT AAGTGGTTTGGTGTTATCCATTTATGGCATTAAAAATG NTACAGATCCGAG TATGTGACTGGCATTTTAAAATNNAT AATTAt ] [+] EMBL CD078787 [ tTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAA GTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGNGTTCATTNTGATGCTCCANATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCANATAACAACGANNATG ] [+] EMBL CD083082 [ gtacttagtATCCTAC ATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTGCATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTNT AAATAAATAAATTAATTAGTG ] [-] EMBL CD116441 [ CCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGCCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAAt ] [-] EMBL CD073247 [ CTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAAT AAat ] [-] EMBL CD075821 [ TGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAATAAATTAATTAG ] [-] EMBL CD076656 [ CGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTGCATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAATAAATTAATTAGTGA] [-] EMBL SMAA25713 [ nGGNCAATCNGATTTACCAGCTGTACGCAAGTATTTCCCTCAATC AAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAAT AAat ] consensusID : consensus_9794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [TTCGGTACGAGGCGCGCTATCTCGTTTGGTCATACAGTCAGCTGTTGTTTCAATTAAATCTACTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGTAGTTATCTTTTAAATGATTATTAGCCAGCCAGAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAA] [+] EMBL CD082209 [TTCGGTACGAGGCGCGCTATCTCGTTTGGTCATACAGTCAGCTGTTGTTTCAATTAAATCTACTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGTAGTTATCTTTTAAATGATTATTAGCCAGCCAGAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAA] [-] EMBL CD189703 [ tgGCGCTATCTCGTTTGGTCATACAGTCAGCTGATGTTTCAATTAAATCTAGTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGTAGTTATCTTTTAAATGATT ] consensusID : consensus_9794#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [CACCGCCAAAATGAATAAGGCGGTGGCGCTATCTCGTTTGGTCATACAGTCAGCTGATGTTTCAATTAAATCTAGTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGCACCTATCTTTTAAA] [+] EMBL CD133510 [CACCGCCAAAATGAATAAGGCGGTGGCGCTATCTCGTTTGGTCATACAGTCAGCTGATGTTTCAATTAAATCTAGTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGCACCTATCTTTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9794#1 ----------TTCGGTACGAGGC--GCGCTATCTCGTTTGGTCATACAGTCAGCTGTTGT 48 consensus_9794#2 CACCGCCAAAATGAATAAGGCGGTGGCGCTATCTCGTTTGGTCATACAGTCAGCTGATGT 60 consensus_9794#0 ---GGCCAAA---AATTTGGCACGAGGTGTAGATGACCTACGCCTGCGG--AACGTATGT 52 * * * ** * * * * * * * * *** consensus_9794#1 TTCAATTAAATCTACTATGGT--GATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGG 106 consensus_9794#2 TTCAATTAAATCTAGTATGGT--GATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGG 118 consensus_9794#0 TT-GGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGA-AACCAG 110 ** ** ** ***** ** ** * * ** * ** ** * ** * consensus_9794#1 AAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTA 166 consensus_9794#2 AAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTA 178 consensus_9794#0 AAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATA--CA 168 ** **** * * *** * ** * * ** * * ** ** * consensus_9794#1 ATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAG---TAGCCCACAT 223 consensus_9794#2 ATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAG---TAGCCCACAT 235 consensus_9794#0 ATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAA 228 ****** *** * * * * ** ** ** * *** * * **** consensus_9794#1 ------TCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGAT 277 consensus_9794#2 ------TCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGAT 289 consensus_9794#0 ATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGA-ATGGGATAAAACAG 287 * ** **** *** * * * *** ** * * * * * * * consensus_9794#1 GACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGG--------TGGAAAAG 329 consensus_9794#2 GACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGG--------TGGAAAAG 341 consensus_9794#0 TCCCGAATCCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAA 347 ** *** * *** **** * ** * *** **** ** consensus_9794#1 CGGTTATGTGCGCAGCTCT-AATGAAAGTAGTTATCTTTTAAATGATTATTAGCCAGCCA 388 consensus_9794#2 CGGTTATGTGCGCAGCTCT-AATGAAAGCACCTATCTTTTAAA----------------- 383 consensus_9794#0 TATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTC 407 ** * ** *** **** ** * * ** ** consensus_9794#1 GAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAA 448 consensus_9794#2 ------------------------------------------------------------ consensus_9794#0 CTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATG 467 consensus_9794#1 TCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAA 508 consensus_9794#2 ------------------------------------------------------------ consensus_9794#0 GAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAA 527 consensus_9794#1 TATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTC 568 consensus_9794#2 ------------------------------------------------------------ consensus_9794#0 TTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCA 587 consensus_9794#1 CCGAATCCTACAATGCGTGCGTTTCTTCTACAAATCTTGGAGAAAAAGATGGAGAAATAT 628 consensus_9794#2 ------------------------------------------------------------ consensus_9794#0 ACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTA 647 consensus_9794#1 TTTGGAAAGCGAATCTTAA----------------------------------------- 647 consensus_9794#2 ------------------------------------------------------------ consensus_9794#0 CAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGGAA 707 consensus_9794#1 ------------------------------------------------------------ consensus_9794#2 ------------------------------------------------------------ consensus_9794#0 TATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAACT 767 consensus_9794#1 ------------------------------------------------------------ consensus_9794#2 ------------------------------------------------------------ consensus_9794#0 TGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGT 827 consensus_9794#1 --------------------------------------- consensus_9794#2 --------------------------------------- consensus_9794#0 TATGTGACTGGCATTTTAAAATAAATAATTAATTAGTGA 866 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||