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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 866 fasta sequence
[GGCCAAAAATTTGGCACGAGGTGTAGATGACCTACGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAACCAGAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG-AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC-TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAAT-AATTAATTAGTGA]
[+] EMBL CD079512 [GGCCAAAAATTTGGCACGAGGTGTAGATGACCTACGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAACCAGAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAANATGGTGTACTGCAATCATACCATCGANTAGAGAAGGAAATATAAAC TATTACTATAGTTNTTGTCTCCGTTAATTTTTTGATTGGTGTATAGTGAACTTTGTCAT AAGTGGTTTGGTGTTATCCATTTATGGCATTAAAAATG NTACAGATCCGAG TATGTGACTGGCATTTTAAAATNNAT AATTAt ]
[+] EMBL CD078787 [ tTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAA GTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGNGTTCATTNTGATGCTCCANATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCANATAACAACGANNATG ]
[+] EMBL CD083082 [ gtacttagtATCCTAC ATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTGCATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTNT AAATAAATAAATTAATTAGTG ]
[-] EMBL CD116441 [ CCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGCCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAAt ]
[-] EMBL CD073247 [ CTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAAT AAat ]
[-] EMBL CD075821 [ TGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAATAAATTAATTAG ]
[-] EMBL CD076656 [ CGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTCCTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATGGAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTGCATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAATAAATTAATTAGTGA]
[-] EMBL SMAA25713 [ nGGNCAATCNGATTTACCAGCTGTACGCAAGTATTTCCCTCAATC AAAATTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCAACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTACAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGG AATATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAAC TTGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGTTATGTGACTGGCATTTTAAAATAAAT AAat ]
consensusID : consensus_9794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence
[TTCGGTACGAGGCGCGCTATCTCGTTTGGTCATACAGTCAGCTGTTGTTTCAATTAAATCTACTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGTAGTTATCTTTTAAATGATTATTAGCCAGCCAGAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAA]
[+] EMBL CD082209 [TTCGGTACGAGGCGCGCTATCTCGTTTGGTCATACAGTCAGCTGTTGTTTCAATTAAATCTACTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGTAGTTATCTTTTAAATGATTATTAGCCAGCCAGAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTCCCGAATCCTACAATGCGTGCGTTTCTTCTACAAATCTTGGAGAAAAAGATGGAGAAATATTTTGGAAAGCGAATCTTAA]
[-] EMBL CD189703 [ tgGCGCTATCTCGTTTGGTCATACAGTCAGCTGATGTTTCAATTAAATCTAGTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGTAGTTATCTTTTAAATGATT ]
consensusID : consensus_9794#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence
[CACCGCCAAAATGAATAAGGCGGTGGCGCTATCTCGTTTGGTCATACAGTCAGCTGATGTTTCAATTAAATCTAGTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGCACCTATCTTTTAAA]
[+] EMBL CD133510 [CACCGCCAAAATGAATAAGGCGGTGGCGCTATCTCGTTTGGTCATACAGTCAGCTGATGTTTCAATTAAATCTAGTATGGTGATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGGAAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTAATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAGTAGCCCACATTCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGATGACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGAAAGCACCTATCTTTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9794#1 ----------TTCGGTACGAGGC--GCGCTATCTCGTTTGGTCATACAGTCAGCTGTTGT 48
consensus_9794#2 CACCGCCAAAATGAATAAGGCGGTGGCGCTATCTCGTTTGGTCATACAGTCAGCTGATGT 60
consensus_9794#0 ---GGCCAAA---AATTTGGCACGAGGTGTAGATGACCTACGCCTGCGG--AACGTATGT 52
* * * ** * * * * * * * * ***
consensus_9794#1 TTCAATTAAATCTACTATGGT--GATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGG 106
consensus_9794#2 TTCAATTAAATCTAGTATGGT--GATTTGCCATGGTTTGTTAGGTTCCAAGAATAATTGG 118
consensus_9794#0 TT-GGTTGGGCATAGTATGGGTGGAAAAGCGGTTATGTGCGCAGCTCTAATGA-AACCAG 110
** ** ** ***** ** ** * * ** * ** ** * ** *
consensus_9794#1 AAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTA 166
consensus_9794#2 AAGAGTATTTCCAATGCGTTTGCTCAGAAAAACTGTGGAACTGCAGGTGTATGATTACTA 178
consensus_9794#0 AAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATA--CA 168
** **** * * *** * ** * * ** * * ** ** *
consensus_9794#1 ATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAG---TAGCCCACAT 223
consensus_9794#2 ATCTCTCACTCACAGATTGTGACCGTTGATTTGCGTAATCACGGAAG---TAGCCCACAT 235
consensus_9794#0 ATCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAA 228
****** *** * * * * ** ** ** * *** * * ****
consensus_9794#1 ------TCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGAT 277
consensus_9794#2 ------TCCGATTATATGAACTATTTTAATATGGCTGAAGATATACACATGGTTGTAGAT 289
consensus_9794#0 ATATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGA-ATGGGATAAAACAG 287
* ** **** *** * * * *** ** * * * * * * *
consensus_9794#1 GACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGG--------TGGAAAAG 329
consensus_9794#2 GACCTCCGCCTGCGGAACGTATGTTTGGTTGGGCATAGTATGGG--------TGGAAAAG 341
consensus_9794#0 TCCCGAATCCTACAATGCGTGCGTTTCTTCTAACAAATCTTGGAGAAAAAGATGGAGAAA 347
** *** * *** **** * ** * *** **** **
consensus_9794#1 CGGTTATGTGCGCAGCTCT-AATGAAAGTAGTTATCTTTTAAATGATTATTAGCCAGCCA 388
consensus_9794#2 CGGTTATGTGCGCAGCTCT-AATGAAAGCACCTATCTTTTAAA----------------- 383
consensus_9794#0 TATTTTGGAAAGCGAATCTTAATGCAATTAAAAGTTGTTGGAATCAGATAACAGGCTTTC 407
** * ** *** **** ** * * ** **
consensus_9794#1 GAAAGGTATGATAAGTTGGTTGTTTTTGACATATCCACGACACCAAAGCCTACTATACAA 448
consensus_9794#2 ------------------------------------------------------------
consensus_9794#0 CTACCGATTTGAATGGTCGTGTTTTCAATCAACCTGTGCTGTTTGTTGCAGCAAGCGATG 467
consensus_9794#1 TCTCTTTCTCCTATAATAAATCTAATGTCTTCTGTGGATTTGAAAGCTTTGGGACACAAA 508
consensus_9794#2 ------------------------------------------------------------
consensus_9794#0 GAAAGTATTTAGGACAATCAGATTTACCAGCTGTACGCAAGTATTTCCCTCAATCAAAAA 527
consensus_9794#1 TATAATGGGAATATAGGAATGGTCCGTAATTCATTGATGAAAGAATGGGATAAAACAGTC 568
consensus_9794#2 ------------------------------------------------------------
consensus_9794#0 TTGTTCAAATAGCTAACACTGGTCATTGGGTTCATTTTGATGCTCCAAATACAGTGACCA 587
consensus_9794#1 CCGAATCCTACAATGCGTGCGTTTCTTCTACAAATCTTGGAGAAAAAGATGGAGAAATAT 628
consensus_9794#2 ------------------------------------------------------------
consensus_9794#0 ACTTGATTACATCTTTTATGCTAGATAAATCATTTGATCCTACCTCATTCACAGATGTTA 647
consensus_9794#1 TTTGGAAAGCGAATCTTAA----------------------------------------- 647
consensus_9794#2 ------------------------------------------------------------
consensus_9794#0 CAGAGATCAAATAACAACGAAAATGGTGTACTGCAATCATACAATCGATAAGAGAAGGAA 707
consensus_9794#1 ------------------------------------------------------------
consensus_9794#2 ------------------------------------------------------------
consensus_9794#0 TATAAACTTATTACTATAGTTTTTGTCTCCGTTAATTTTTTGATTGTTGTATAGTGAACT 767
consensus_9794#1 ------------------------------------------------------------
consensus_9794#2 ------------------------------------------------------------
consensus_9794#0 TGTCATAAAGTGGTTTGGTGTTATCCATTTATGGCATTAAAATTGTTTACAGATCCGAGT 827
consensus_9794#1 ---------------------------------------
consensus_9794#2 ---------------------------------------
consensus_9794#0 TATGTGACTGGCATTTTAAAATAAATAATTAATTAGTGA 866
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||