cluster # 98

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 98 cluster # 98 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_98#0 length = 367 sequences # 1

consensus_98#1 length = 311 sequences # 1

consensusID : consensus_98#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [TTTTTTTTTTTTTTTTTTCCGCTTAATATAAACTTTTATTTTTACTGAGGATATGGTAGGCAACCAAAAATTAGAAGCTAACAAAAATAAGGAAATACAGACACAATAACTTCCAAAGGAAAAATAGCTAATATATCTGTCCTTCAATTTCTTTTCTAAAAAAGATGTGCAATTTGAAGCTGTACAGTAATCTGAATATATGGTTAAAATCTTTGATGATGAGTACGGTTGAAACGTGGACCAAATACCTTTAATGAATTAATGCCGATTCTTCTATAAGTATTTCGATTTAGCACCGGAGATAAAGCACGAAACCGTCTGTTGTGAAGATTATTCGTTCACGTTCAAATCGACGGAAAGATGAGTT]

[+] EMBL AI395578             [TTTTTTTTTTTTTTTTTTCCGCTTAATATAAACTTTTATTTTTACTGAGGATATGGTAGGCAACCAAAAATTAGAAGCTAACAAAAATAAGGAAATACAGACACAATAACTTCCAAAGGAAAAATAGCTAATATATCTGTCCTTCAATTTCTTTTCTAAAAAAGATGTGCAATTTGAAGCTGTACAGTAATCTGAATATATGGTTAAAATCTTTGATGATGAGTACGGTTGAAACGTGGACCAAATACCTTTAATGAATTAATGCCGATTCTTCTATAAGTATTTCGATTTAGCACCGGAGATAAAGCACGAAACCGTCTGTTGTGAAGATTATTCGTTCACGTTCAAATCGACGGAAAGATGAGTT]




>consensus_98#0
TTTTTTTTTTTTTTTTTTCCGCTTAATATAAACTTTTATTTTTACTGAGGATATGGTAGG
CAACCAAAAATTAGAAGCTAACAAAAATAAGGAAATACAGACACAATAACTTCCAAAGGA
AAAATAGCTAATATATCTGTCCTTCAATTTCTTTTCTAAAAAAGATGTGCAATTTGAAGC
TGTACAGTAATCTGAATATATGGTTAAAATCTTTGATGATGAGTACGGTTGAAACGTGGA
CCAAATACCTTTAATGAATTAATGCCGATTCTTCTATAAGTATTTCGATTTAGCACCGGA
GATAAAGCACGAAACCGTCTGTTGTGAAGATTATTCGTTCACGTTCAAATCGACGGAAAG
ATGAGTT

consensusID : consensus_98#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [TGGNAGGCAACCAAAAATTAGAAGCTAACAAAAATAAGGAAATNCAGACACAATACCTNCCAAAGGTAAAAATAGCTAATATTTCTGCCCNCCAATTTCTTTTCTAAAAAAGATGTGCCAANTGGNNGCTGTNCAGNANTCTGATTNTNTGGCTAACATCTTNGATGATGAGTACGGNCGAANCGTNGACCAGATACCTTTAATGAATTANNGCCGNTNCTTCTNTAAGTATTGCGATTNAGCACCGGAGGATAAAGCACGACCCCNTCTGTTGTGGAAGATTNATTCGNNCACGTTTCAAATCGACGGNA]

[+] EMBL SM855                [TGGNAGGCAACCAAAAATTAGAAGCTAACAAAAATAAGGAAATNCAGACACAATACCTNCCAAAGGTAAAAATAGCTAATATTTCTGCCCNCCAATTTCTTTTCTAAAAAAGATGTGCCAANTGGNNGCTGTNCAGNANTCTGATTNTNTGGCTAACATCTTNGATGATGAGTACGGNCGAANCGTNGACCAGATACCTTTAATGAATTANNGCCGNTNCTTCTNTAAGTATTGCGATTNAGCACCGGAGGATAAAGCACGACCCCNTCTGTTGTGGAAGATTNATTCGNNCACGTTTCAAATCGACGGNA]




>consensus_98#1
TGGNAGGCAACCAAAAATTAGAAGCTAACAAAAATAAGGAAATNCAGACACAATACCTNC
CAAAGGTAAAAATAGCTAATATTTCTGCCCNCCAATTTCTTTTCTAAAAAAGATGTGCCA
ANTGGNNGCTGTNCAGNANTCTGATTNTNTGGCTAACATCTTNGATGATGAGTACGGNCG
AANCGTNGACCAGATACCTTTAATGAATTANNGCCGNTNCTTCTNTAAGTATTGCGATTN
AGCACCGGAGGATAAAGCACGACCCCNTCTGTTGTGGAAGATTNATTCGNNCACGTTTCA
AATCGACGGNA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_98#0      TTTTTTTTTTTTTTTTTTCCGCTTAATATAAACTTTTATTTTTACTGAGGATATGGTAGG 60
consensus_98#1      -----------------------------------------------------TGGNAGG 7
                                                                         *** ***

consensus_98#0      CAACCAAAAATTAGAAGCTAACAAAAATAAGGAAATACAGACACAATAACTTCCAAAGG- 119
consensus_98#1      CAACCAAAAATTAGAAGCTAACAAAAATAAGGAAATNCAGACACAATACCTNCCAAAGGT 67
                    ************************************ *********** ** ******* 

consensus_98#0      AAAAATAGCTAATATATCTGTCCTTCAATTTCTTTTCTAAAAAAGATGTGC-AATTTGAA 178
consensus_98#1      AAAAATAGCTAATATTTCTGCCCNCCAATTTCTTTTCTAAAAAAGATGTGCCAANTGGNN 127
                    *************** **** **  ************************** ** * *  

consensus_98#0      GCTGTACAGTAATCTGAATATATGGTTAAAATCTTTGATGATGAGTACGGTTGAAACGTG 238
consensus_98#1      GCTGTNCAGNANTCTGATTNTNTGGCTAACATCTTNGATGATGAGTACGGNCGAANCGTN 187
                    ***** *** * ***** * * *** *** ***** **************  *** *** 

consensus_98#0      GACCAAATACCTTTAATGAATTAATGCCGATTCTTCTATAAGTATTTCGATTTAGCACCG 298
consensus_98#1      GACCAGATACCTTTAATGAATTANNGCCGNTNCTTCTNTAAGTATTGCGATTNAGCACCG 247
                    ***** *****************  **** * ***** ******** ***** *******

consensus_98#0      GAG-ATAAAGCACGAAACCGTCTGTTGTGAAGA--TTATTCGTTCACGTT-CAAATCGAC 354
consensus_98#1      GAGGATAAAGCACGACCCCNTCTGTTGTGGAAGATTNATTCGNNCACGTTTCAAATCGAC 307
                    *** ***********  ** ********* *    * *****  ****** *********

consensus_98#0      GGAAAGATGAGTT 367
consensus_98#1      GGNA--------- 311
                    ** *