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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 941 fasta sequence
[AATTCGGGCACGAGGGATTATCGACCTAATACAATCAAACAAAATTCATATTGATTTACAGTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGTCAGAATACTACTTACAAGGAGACTGTATCAGCTGTTGCTGGTCTAATCATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGTCTTA-TACTTTCTCATTTATCTCTT-ATTATCACTCTA-TATTCTTTTGTGACTAATTGAGCTTGGGTAAT-AATAACCTGTATTGTATTGTACAATTGACACTATTC-ATGTGCAAGGTGTGTTG-TAGATATCCAATGATTGT---T--TTATTGTGTGTATTTTGCTTTACTTACTTACTCCTGTTACCCCTCATCGAGGAGCATAGGCCGCTCACCAGCATTCTCTATCCAACTCTGTTATTGTGTGTAGTTTTTCCTAATTTAAATATGATATTTATATATAAAAATT]
[+] EMBL CD078041 [AATTCGGGCACGAGGGATTATCGACCTAATACAATCAAACAAAATTCATATTGATTTACAGTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGT ]
[+] EMBL CD079028 [ AAAATTCATATCGATTTACAGTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGTCAGAATACTACTTACAAGGAGACTGTATCAGCTGTTGCTGGTCTAATCATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTG ]
[+] EMBL CD081974 [ AGTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGTCAGAATACTACTTACAAGGAGACTGTATCAGCTGTTGCTGGTCTAATCATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGNCTTA TACTTTCTCATTTATCTCTT ATTATCACTCTA TATTCTTTTGTGACTAATTGAGCTTGGGTAAT AATAACCTGTATTATATTGTACAATTGACACTATTC ATGTGCAAGGTGTGGTG TAGATATCC ]
[+] EMBL CD079271 [ ACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGTCAGAATACTACTTACAAGGAGACTGTATCAGCTGTTGCTGGTCTAATCATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGGCTTA TACTTTCTCATTTATCTCTT ATTATCACTCTA TATTCTTTTGNGACTAATTGAGCTTGGGTAAT An ]
[-] EMBL CD184412 [ TGGTATAATCATTTTAGGCACGGTATGCGTATTAATCATCATCTTACTGGATGCAGATGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACGTCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGA ]
[+] EMBL CD141661 [ GGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGANAGTCGGTTGGCACAT ]
[-] EMBL CD114947 [ TGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGTCTTA TACTTTCTCATTTATCTCTT ATTATCACTCTA TATTCTTTTGTGACTAATTGAGCTTGGGTAATAAATAACCTGTATTGTATTGTACAATTGACACTATTCAATGTGCAAGGTGTGTTGTTAGATATCCAATGATTGT T TTATTGTGTGTATTTTGCTTTACTTACTTACTCCTGTTACCCCTCATCGAGGAGCATAGGCCGCTCACCAGCATTC ]
[-] EMBL CD073479 [ ATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGTCTTA TACTTTCTCATTTATCTCTT ATTATCACTCTA TATTCTTTTGTGACTAATTGAGCTTGGGTAATAAATAACCTGTATTGTATTGTACAATTGACAGTATTCAATGTGCAAGGTGTGTTGTTAGATATCCAATGATTGTGTGTACTTATTGTGTGTACTTTGCTTTACTTACTTACTCCTGTTACCCCTCATCGAGGAGCATAGGCCGCTCACCAGCATTTTCTATCCAACTCTGTTATTGTGTGTAGTTTTTCCTAATTTAAATATGATATTTATATATAAAAATT]
[+] EMBL CD177678 [ CAATTCGAGAATGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAGCATTCAAACAATTGTCTTACTACTTTCTCATTTATCTCTTAATTATCACTCTACTATTCTTTTGTGACTAAatt ]
consensusID : consensus_9805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[ATGAAAAAGTGCGTGATGAGCGAAGCTACACTACTTGGAATGTTGAAGATTGATCCATTCACTTATGGTTTAGTCATCAAACAGGAGGTTGAACAAGGGTGCGAGGATGATCCTGCTGTACTAGATATAACCCCCGAAATGATTTCCCAAAAATTTGCTGGTATCGTCCAGAATATTGCTTGATTAAGCTTGGCTGTGGACTATACAACACTTGCTAGCATCCCACATGTGCTCGCACACGGGTTCAAAAACTTGCTGGCTTTGTCTCTAATGACCGATTACTCGTTCAAAGAGGCCGAACAGATTAAAGAGTTCCTAGCAGATCCTTCTAAATATGCTACAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGCGATGAGCGAAGCTACACTACTTGGTATGTTGAAAATTCATCCATTCACTTATGGTTTAGTCATCAGACAGGTGTTTGAACAAGGTTGCGTGTATGATCCTGCTGCACT]
[+] EMBL CD096451 [ATGAAAAAGTGCGTGATGAGCGAAGCTACACTACTTGGAATGTTGAAGATTGATCCATTCACTTATGGTTTAGTCATCAAACAGGAGGTTGAACAAGGGTGCGAGGATGATCCTGCTGTACTAGATATAACCCCCGAAATGATTTCCCAAAAATTTGCTGGTATCGTCCAGAATATTGCTTGATTAAGCTTGGCTGTGGACTATACAACACTTGCTAGCATCCCACATGTGCTCGCACACGGGTTCAAAAACTTGCTGGCTTTGTCTCTAATGACCGATTACTCGTTCAAAGAGGCCGAACAGATTAAAGAGTTCCTAGCAGATCCTTCTAAATATGCTACAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGCGATGAGCGAAGCTACACTACTTGGTATGTTGAAAATTCATCCATTCACTTATGGTTTAGTCATCAGACAGGTGTTTGAACAAGGTTGCGTGTATGATCCTGCTGCACT]
consensusID : consensus_9805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence
[CTAGTGATTTGACAGGAGGTGTTGCAAACCCACTCTTAAACAAGCAATATTCTGGACGATAGCAGCAAATTTTTCGAAAATCATTTCGGGGGTTATATCTAGCACAGCAGGATCATACACGCAACCTTGTTCAAACACCTGTTTGATGACTAAACCATAAGTGAATGGATGAATTTTCAACATTCCAAGTAGTGTAGCTTCGCTCATCCCGACTTTTTCATCTTTGCAACA]
[+] EMBL CD177837 [CTAGTGATTTGACAGGAGGTGTTGCAAACCCACTCTTAAACAAGCAATATTCTGGACGATAGCAGCAAATTTTTCGAAAATCATTTCGGGGGTTATATCTAGCACAGCAGGATCATACACGCAACCTTGTTCAAACACCTGTTTGATGACTAAACCATAAGTGAATGGATGAATTTTCAACATTCCAAGTAGTGTAGCTTCGCTCATCCCGACTTTTTCATCTTTGCAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9805#0 AATTCGGGCACGAGGGATTATCGACCTAATACAATCAAACAAAATTCATATTGATTTACA 60
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 ------------------------------------------------------------
consensus_9805#0 GTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAAT 120
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 ------------------------------------------------------------
consensus_9805#0 CAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAG 180
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 ------------------------------------------------------------
consensus_9805#0 CAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCT 240
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 ---------------------------------------------ATGAAAAAGTGCGTG 15
consensus_9805#0 CATCATGTCAGAATACTACTTACAA----GGAGACTGTATCAGCTGTTGCTGGTCTAATC 296
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 ATGAGCGAAGCTACACTACTTGGAATGTTGAAGATTGATCCATTCACTTATGGTTTAGTC 75
consensus_9805#0 ATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCA 356
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 ATCAAACAGGAGGTTGAACAAGGGTGCGAGGATGATCCTGCTGTACTAGATATAACCCCC 135
consensus_9805#0 GATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGT 416
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 GAAATGATTTCCCAAAAATTTGCTGGTATCGTCCAGAATATTGCTTGATTAAGCTTGGCT 195
consensus_9805#0 GCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCA 476
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 GTGGACTATACAACACTTGCTAGCATCCCACATGTGCTCGCACACGGGTTCAAAAACTTG 255
consensus_9805#0 TACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATG 536
consensus_9805#2 ----------------------------------------------------CTAGTGAT 8
consensus_9805#1 CTGGCTTTGTCTCTAAT---GACCGATTACTCGTTCAAAGAGGCCGAACAGATTAAAGAG 312
*
consensus_9805#0 TCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGG 596
consensus_9805#2 TTGACAGGAGGTGTTGC----AAACCCACTCTTA-AACAAGCAATATTCTGGACGATAG- 62
consensus_9805#1 TTCCTAGCAGATCCTTCTAAATATGCTACAGTCGCTCCATGTGATGTCATCG-TGCCAGC 371
* * * * * * * ** * * * * *
consensus_9805#0 TTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAAT 656
consensus_9805#2 -CAGCAAATTTTT----CGAAAATCATTTCGGGGGTTATATCTAGCA-CAGCAGGATCAT 116
consensus_9805#1 GCAAAACACTGGT----CTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATAC 427
* * * * * ** * * * * * *
consensus_9805#0 TGTCTTATACTTTCTCATTTATCTCTTATTATCACTCTATATTCTTTTGTGACTAATTGA 716
consensus_9805#2 ACACGCAACCTTGTTCAAACACCTGTT-TGATGACTA---AACCATAAGTGAATGGATGA 172
consensus_9805#1 CGACA-AAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAA 486
* * ** * * * ** ** * * * ** *
consensus_9805#0 GCTTGGGTAATAATAACCTGTATTGTATTGTACAATTGACACTATTCATGTGCAAGGTGT 776
consensus_9805#2 ATTTTCAACATTCCAAGTAGTGTAGCTTCGCTCATCCCGACTTTTTCATCTTTGCAACA- 231
consensus_9805#1 GATGAAAAAGTCGCGATGAGCGAAGCTACACT--ACTTGGTATGTTGAAAATTCATCCAT 544
* * * * * * ** *
consensus_9805#0 GTTGTAGATATCCAATGATTGTTTTATTGTGTGTATTTTGCTTTACTTACTTACTCCTGT 836
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 TCACTTATGGTTTAGTCATCAGACAGGTGTTTGAACAAGGTTGCGTGTATGATCCTGCTG 604
consensus_9805#0 TACCCCTCATCGAGGAGCATAGGCCGCTCACCAGCATTCTCTATCCAACTCTGTTATTGT 896
consensus_9805#2 ------------------------------------------------------------
consensus_9805#1 CACT-------------------------------------------------------- 608
consensus_9805#0 GTGTAGTTTTTCCTAATTTAAATATGATATTTATATATAAAAATT 941
consensus_9805#2 ---------------------------------------------
consensus_9805#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||