These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1120 fasta sequence [CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCATCACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAGGTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGACCAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT-CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTATCACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAGCTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGACCTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAATTACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTATAATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTGATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC] [-] EMBL CD064361 [CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCATCACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAGGTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGACCAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAA TCCAGGTTGTCC ] [-] EMBL CD170882 [ CAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTA ] [-] EMBL CD180795 [ ccaccagACCTTCTTCCACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACAC ] [+] EMBL CD170879 [ GCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTCCCCCCTGAGTTCCCTT ] [+] EMBL CD145329 [ ccGACCGTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTATCACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAGCTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGACCTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAATTACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGT ] [+] EMBL CD132368 [ GGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTATAATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTGATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC] [+] EMBL CD072597 [ CACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTT ] [+] EMBL CD072598 [ CACCTTCATCTCCTGGCTCTCCACTGTCACCTCTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTTGAGGACCTGGTT ] [+] EMBL CD072644 [ CACCTTCATCTCCT GCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTT ] consensusID : consensus_9807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 414 fasta sequence [ATCGTCACCGTCATCTCCAACTTCACCAATTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCTTTAAGACCCTCATCACCAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACCTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTATCACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAGGTCCAAAAGGTGAACCGTTAACTGTTTGCCCTTT] [+] EMBL CD128819 [ATCGTCACCGTCATCTCCAACTTCACCAATTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCTTTAAGACCCTCATCACCAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACCTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTATCACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAGGTCCAAAAGGTGAACCGTTAACTGTTTGCCCTTT] [-] EMBL CD068794 [ CCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACC TTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGggtacc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9807#0 CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCAT 60 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 CACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAG 120 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 GTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGAC 180 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 CAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTTCAC 240 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 CAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATAT 300 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 GACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAA 360 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 CTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTT 420 consensus_9807#1 -------------------------------ATCGTCACCGTCATCTCCAACTTCACCAA 29 ** *** * * * ** ** *** consensus_9807#0 GTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGC 480 consensus_9807#1 TTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCT---------TTAAGACCCTCATCAC 80 *** ** ****** * * ******* **** ** ***** ***** * consensus_9807#0 CTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTAT 540 consensus_9807#1 CAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCAT 140 * * *** ******** *** *** **** ** ** * ** * ** consensus_9807#0 CACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAG 600 consensus_9807#1 GGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAG 200 ** ** **** *** * * * * * ** * * ** ** consensus_9807#0 CTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGAC 660 consensus_9807#1 ATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCAC 260 ** ***** ** * *** * *** * * **** ****** * * ** consensus_9807#0 CTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAAT 720 consensus_9807#1 CTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTAT 320 ** ** * ******* *** *** ** * * *** * *** ** consensus_9807#0 TACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGG 780 consensus_9807#1 CACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAG 380 ***** *** **** ***** *** ** ***** ** * *** * consensus_9807#0 GTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCAC 840 consensus_9807#1 GTCCAAAAGGTGAACCGTTA--ACTGTTTGCCCTTT------------------------ 414 ** ** ** * *** ** ** *** * ** consensus_9807#0 CTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTT 900 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 GACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATG 960 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 GTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTAT 1020 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 AATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTG 1080 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 ATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC 1120 consensus_9807#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||