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Schistosoma mansoni
cluster # 9807 cluster # 9807       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9807#0 length = 1120 sequences # 9  
consensus_9807#1 length = 414 sequences # 2  

consensusID : consensus_9807#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1120
fasta sequence
                              [CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCATCACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAGGTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGACCAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT-CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTATCACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAGCTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGACCTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAATTACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTATAATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTGATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC]

[-] EMBL CD064361             [CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCATCACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAGGTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGACCAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAA TCCAGGTTGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD170882             [                                                                                                                                                                                    CAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD180795             [                                                                                                                                                                                                                              ccaccagACCTTCTTCCACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD170879             [                                                                                                                                                                                                                                                                                                                                               GCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTCCCCCCTGAGTTCCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD145329             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccGACCGTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTATCACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAGCTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGACCTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAATTACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGT                                                                                                                                                                               ]
[+] EMBL CD132368             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTATAATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTGATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC]
[+] EMBL CD072597             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTT                                                                                                                                  ]
[+] EMBL CD072598             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCTTCATCTCCTGGCTCTCCACTGTCACCTCTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTTGAGGACCTGGTT                                                                                                                                  ]
[+] EMBL CD072644             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCTTCATCTCCT GCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTT                                                                                                                                  ]


>consensus_9807#0 CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCAT CACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAG GTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGAC CAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTTCAC CAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATAT GACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAA CTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTT GTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGC CTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTAT CACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAG CTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGAC CTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAAT TACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGG GTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCAC CTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTT GACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATG GTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTAT AATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTG ATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC



consensusID : consensus_9807#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 414
fasta sequence
                              [ATCGTCACCGTCATCTCCAACTTCACCAATTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCTTTAAGACCCTCATCACCAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACCTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTATCACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAGGTCCAAAAGGTGAACCGTTAACTGTTTGCCCTTT]

[+] EMBL CD128819             [ATCGTCACCGTCATCTCCAACTTCACCAATTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCTTTAAGACCCTCATCACCAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACCTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTATCACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAGGTCCAAAAGGTGAACCGTTAACTGTTTGCCCTTT]
[-] EMBL CD068794             [                                                                                                                   CCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACC TTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGggtacc                                                                                                            ]


>consensus_9807#1 ATCGTCACCGTCATCTCCAACTTCACCAATTGGTCCCTGTTCACCATCTGTACCTTGTTG TCCTTTAAGACCCTCATCACCAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAAT ATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTAC AACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTC ACCAATACGACCTTTTTCACCTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAG CCGGCCAGTATCACCTCTATCACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACC TGGATCCCCTATTTCTCCAGGTCCAAAAGGTGAACCGTTAACTGTTTGCCCTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9807#0      CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCAT 60
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      CACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAG 120
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      GTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGAC 180
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      CAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTTCAC 240
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      CAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATAT 300
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      GACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAA 360
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      CTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTT 420
consensus_9807#1      -------------------------------ATCGTCACCGTCATCTCCAACTTCACCAA 29
                                                     **    *** * * * ** **   ***  

consensus_9807#0      GTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGC 480
consensus_9807#1      TTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCT---------TTAAGACCCTCATCAC 80
                       *** **  ****** *  * *******   ****         ** ***** ***** *

consensus_9807#0      CTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTAT 540
consensus_9807#1      CAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCAT 140
                      *   *  ***   ******** *** ***     ****   ** **     * ** * **

consensus_9807#0      CACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAG 600
consensus_9807#1      GGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAG 200
                        **   ** ****      ***  *  * * *     * ** *        *  ** **

consensus_9807#0      CTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGAC 660
consensus_9807#1      ATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCAC 260
                       **  *****    ** *    ***   *  *** * *  ****  ****** * *  **

consensus_9807#0      CTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAAT 720
consensus_9807#1      CTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTAT 320
                      **      **   *  *******  *** ***   **  *  * ***  *  ***   **

consensus_9807#0      TACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGG 780
consensus_9807#1      CACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAG 380
                       *****     ***     ****   *****   *** ** ***** **   *  *** *

consensus_9807#0      GTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCAC 840
consensus_9807#1      GTCCAAAAGGTGAACCGTTA--ACTGTTTGCCCTTT------------------------ 414
                      ** **  ** *  *** **   **   ***  * **                        

consensus_9807#0      CTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTT 900
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      GACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATG 960
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      GTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTAT 1020
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      AATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTG 1080
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      ATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC 1120
consensus_9807#1      ----------------------------------------
                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)