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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1267 fasta sequence
[TGTGTGCGTTACTGTACTTAGTGTTATTAAGGATGAAGTCAATCTCCAGAGTACTCAGAAGTCATCTTGTCTCAAATCTCACTGATATTTTTCTTTGTTAACGCCCTATGTTTTCTTTCTGAGCATGCCATGCAATTTGAGACCGGAGTTTGGTCATGTGAAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAA-GGATCCCATCGACCCTCTACCC-GATCACGA-GGATGTAAAGTACAAAAAAT-GTCTTGAATGTCCCCAAACACCTAGTAGCAATAATATAAAGTCCAGTACTCGTCACATCAAAACAGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCTGATCCGAAATGCACTCAGCCATTCACTTGCAAACGGTTCACAAAACGACATATTTGTCAGGGAGTCTCGAAACACCAAGAACCTAACCTATGCGAGCTCGGAAGGGATTCGAGTTCGACATCTGACTTACCATCATCAAACTGTACTTGCTCTGGAAACGTATGTGGTCTTCATGGTGGTAGTAAACTAGACTCTAGCTACACGCAAAACTCAAGATGCTTTTCCTCAGAATATCGTGGACTCAATTTAATTTCAGATCATTCTACGGGATATAAGGTTTCTCGGTATCAAGAGCAAGGTGATACAAACAAAACAAGGTGCGGTAGTTTACAGTGGATATCTGACACTTTCCAACGTATATTTCATGCTTCTAAGAGCTTGAAATCTAAAACAAATTTTCTTCACCCACCAGGTGATTCACTTGTAAATGTAAAAAATNTACCTCAGTTAAATGAAGATAAATTTTATAGGCGACTGAAACCACTTGTTCATAAGAAGGATCGCGAATTGAAGAAGGATGTNTTCGATCAGAAGTTTGGGTGTCGTTTCGTACAACACAACGTTCTTTCAGCCATAATAGTTCTCTT]
[-] EMBL CD155744 [TGTGTGCGTTACTGTACTTAGTGTTATTAAGGATGAAGTCAATCTCCAGAGTACTCAGAAGTCATCTTGTCTCAAATCTCACTGATATTTTTCTTTGTTAACGCCCTATGTTTTCTTTCTGAGCATGCCATGCAATTTGAGACCGGAGTTTGGTCATGTGAAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTC ]
[-] EMBL CD194848 [ CATGCCATGCAATTTGAGACCGGAGTTTGGTCATGTGAAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAA GGATCCAATCGACCCTCTACCC GATCACGA GGATGTAAAGTACAAAAAAT GTCTTGAATGTCCCCAAACACCTAGTAGCAATAATATAAAGTCCAGTACTCGTCACATCAAAACAGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCTGAT ]
[+] EMBL CD182917 [ AAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAATTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGG TTACATCCACACTCTACATGTGACGTTGAGTCAATCGANCAACCTCAGAA GGATCCCATCGACCCTCTACCC GATCACGA GGATGTAANGTACCAAAAATGGTCTTGAATGTCCCCAANCACCTAGTt ]
[+] EMBL CD183016 [ AAAAGCATCCTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTCGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAA GGATCCCATCGACCCTCTACCCNGATCACGA GATGTAAAGTAC AAAAAT GTCTTGAATGTTCCCAAACACCTAGTA ]
[+] EMBL CD183197 [ AAAAGCATACTGTTGTGCCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGTGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGANCAACCTCAGAAGGGAT CCATCGACCCTCTACCC GATCACGATGAATGT AAGTACAAAAAAT GTCTTGAATGTCCCCAANCACCTAGT ]
[+] EMBL CD183187 [ AAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTAGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAAGGGAT CCATCGACCCTCTAC ]
[+] EMBL CD183189 [ AAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTAGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTC ]
[+] EMBL CD183147 [ AAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGT ]
[+] EMBL CD201411 [ TCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCTGATCCGAAATGCACTCAGCCATTCACTTGCAAACGGTTCACAAAACGACATATTTGTCAGGGAGTCTCGAAACACCAAGAACCTAACCTATGCGAGCTCGGAAGGGATTCGAGTTCGACATCTGACTTACCATCATCAAACTGTACTTGCTCTGGAAACGTATGTGGTCTTCATGGTGGTAGTAAACTAGACTCTAGCTACACGCAAAACTCAAGATGCTTTTCCTCAGAATATCGTGGACTCAATTTAATTTCAGATCATTCTACGGGATATAAGGTTTCTCGGTATCAAGAGCAAGGTGATACAAACAAAACAAGGTGCGGTAGTTTACAGTGGATATCTGACACTTTCCAACGTATATTTCATGCTTCTAAGAGCTTGAAATCTAAAACAAATTTTCTTCACCCACCAGGTGATTCACTTGTAAATGTAAAAAATNTACCTCAGTTAAATGAAGATAAATTTTATAGGCGACTGAAACCACTTGTTCATAAGAAGGATCGCGAATTGAAGAAGGATGTNTTCGATCAGAAGTTTGGGTGTCGTTTCGTACAACACAACGTTCTTTCAGCCATAATAGTTCTCTT]
[-] EMBL CD189364 [ acGCACTCAGCCATTCACTTGCAAACGGAAAAAAAAACGACATATTTGTCAGGGAGTCTCGAAACACCAAGAACCTAACCTATGCGAGCTCGGAAGGGATTCGAGTTCGACA ]
consensusID : consensus_9810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[AAGAGCAATAGGTAGGTAAAACATAAATGCTTAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAAGGATCCAATCGACCCTCTACCCGATCACGAGGATGTAAAGTACAAAAAATGTCTTGAATGTCCCCAAACACCCAGTAGCAATAATATAAAGTCCCAGTACTCGTCACATCAAAACAGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCT]
[+] EMBL CD127922 [AAGAGCAATAGGTAGGTAAAACATAAATGCTTAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAAGGATCCAATCGACCCTCTACCCGATCACGAGGATGTAAAGTACAAAAAATGTCTTGAATGTCCCCAAACACCCAGTAGCAATAATATAAAGTCCCAGTACTCGTCACATCAAAACAGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9810#0 TGTGTGCGTTACTGTACTTAGTGTTATTAAGGATGAAGTCAATCTCCAGAGTACTCAGAA 60
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 GTCATCTTGTCTCAAATCTCACTGATATTTTTCTTTGTTAACGCCCTATGTTTTCTTTCT 120
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 GAGCATGCCATGCAATTTGAGACCGGAGTTTGGTCATGTGAAAAGCATACTGTTGTGTCT 180
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 CCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACG 240
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 AATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCA 300
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 AAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACT 360
consensus_9810#1 -----------AAGAGCAATA-GGTAGGTAAAACATAAATGCTTAAAATGTGAACCAACT 48
* ** * * ***************** *****************
consensus_9810#0 GTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTA 420
consensus_9810#1 GTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTA 108
************************************************************
consensus_9810#0 TGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCT 480
consensus_9810#1 TGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCT 168
************************************************************
consensus_9810#0 CAGAAGGATCCCATCGACCCTCTACCCGATCACGAGGATGTAAAGTACAAAAAATGTCTT 540
consensus_9810#1 CAGAAGGATCCAATCGACCCTCTACCCGATCACGAGGATGTAAAGTACAAAAAATGTCTT 228
*********** ************************************************
consensus_9810#0 GAATGTCCCCAAACACCTAGTAGCAATAATATAAAGTCC-AGTACTCGTCACATCAAAAC 599
consensus_9810#1 GAATGTCCCCAAACACCCAGTAGCAATAATATAAAGTCCCAGTACTCGTCACATCAAAAC 288
***************** ********************* ********************
consensus_9810#0 AGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTT 659
consensus_9810#1 AGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTT 348
************************************************************
consensus_9810#0 ACGTTCGATAAAAATATTTCTGATCCGAAATGCACTCAGCCATTCACTTGCAAACGGTTC 719
consensus_9810#1 ACGTTCGATAAAAATATTTCT--------------------------------------- 369
*********************
consensus_9810#0 ACAAAACGACATATTTGTCAGGGAGTCTCGAAACACCAAGAACCTAACCTATGCGAGCTC 779
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 GGAAGGGATTCGAGTTCGACATCTGACTTACCATCATCAAACTGTACTTGCTCTGGAAAC 839
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 GTATGTGGTCTTCATGGTGGTAGTAAACTAGACTCTAGCTACACGCAAAACTCAAGATGC 899
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 TTTTCCTCAGAATATCGTGGACTCAATTTAATTTCAGATCATTCTACGGGATATAAGGTT 959
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 TCTCGGTATCAAGAGCAAGGTGATACAAACAAAACAAGGTGCGGTAGTTTACAGTGGATA 1019
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 TCTGACACTTTCCAACGTATATTTCATGCTTCTAAGAGCTTGAAATCTAAAACAAATTTT 1079
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 CTTCACCCACCAGGTGATTCACTTGTAAATGTAAAAAATNTACCTCAGTTAAATGAAGAT 1139
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 AAATTTTATAGGCGACTGAAACCACTTGTTCATAAGAAGGATCGCGAATTGAAGAAGGAT 1199
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 GTNTTCGATCAGAAGTTTGGGTGTCGTTTCGTACAACACAACGTTCTTTCAGCCATAATA 1259
consensus_9810#1 ------------------------------------------------------------
consensus_9810#0 GTTCTCTT 1267
consensus_9810#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||