These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1536 fasta sequence [TAATGTGCCCCCGAAAATAGCTAATACTAATATCCTTTCACCTACACCAAGTGTGGTTGTATTTCCAAAAACTAATGTATTTATACCATCGGTATTCGCTCCAGTTTGTAAAGATTCTTCCAATAATTCATCGACCCCAAATCACTCCTGTCATGTGGG-AGAACTACAGTTTCGCAATTCACCGTTGGATAACGTTGTTAAACGTCTCTGTGAAAGCAATCCATCTGGTAGCTCTGAATCTTCTACACTTCCATGTAATAACAAAGTAACTGAACCCCCGAAGTTGTCATCGAGCGTAAATTCTCAGAATATGCCTATCAGTTCGGTTTCAAGTAATCAATGTACCGATTTCATATTCGGCCATAACGTTTCGGAACGCGTCACAAATGCTTCTTTATCTACAGTCGTTAACCGTGATATCTCTGGCAAGGATCTTCCAGTAGAGTCTTCAGAGTCAAACGACCACAGTTTGTCTCCGGAAAAAGAAGAGAGTGTAGATGCTTCTGAAACTGGTGAGCATTGTACTGTTCTTCCTAGTAAACAAACACTAGAAGAATCTGCCGCTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTATCTCTTAGCTAATCTTC--CA-GA---ATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCAAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA-GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT-TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTG-CGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACAATC] [+] EMBL CD149128 [TAATGTGCCCCCGAAAATAGCTAATACTAATATCCTTTCACCTACACCAAGTGTGGTTGTATTTCCAAAAACTAATGTATTTATACCATCGGTATTCGCTCCAGTTTGTAAAGATTCTTCCAATAATTCATCGACCCCAAATCACTCCTGTCATGTGGG AGAACTACAGTTTCGCAATTCACCGTTGGATAACGTTGTTA ] [+] EMBL CD082411 [ CGACCCCAAATTACTCCTGTCATGTGGGTANAACTACAGTTTCGCAACTCACCGTTGGATAACGTTGTTAAACGTCTCTGTGAAAGCAATCCATCTGGTAGCTCTGAATCTTCTACACTTCCATGTAATAACAAAGTAACTGAACCCCCGAAGTTGTCATCGAGCGTAAATTCTCAGAATATGCCTATCAGTTCGGTTTCAAGTAATCAATGTACCGATTTCATATTCGGCCATAACGTTTCGGAACGCGTCACAAATGCTTCTTTATCTACAGTCGTTAACCGTGATATCTCTGGCAAGGATCTTCCAGTAGAGTCTTCAGAGTCAAACGACCACAGTTTGTCTCCGGAAAAAGAAGAGAGTGTAGATGCTTCTGAAACTGGTGAGCATTGTACTGTTCTTCCTAGTAAACAAACACTAGAAGAATCTGCCGCTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTATCTCTTAGCTAATCTTC CA GA ATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCAAGTCTNCCCTTTT ] [+] EMBL CD169832 [ AGATGCTTCTGAAACTGGTGAGCATTGTACTGTTCTTCCTAGTAAACAAACACTAGAAGAATCTGCCGCTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTATCTCTTAGCTAATCTTC CA GA ATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCAAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGGGCTTATCTACTTGTTATGCATTCACATAAAG ] [-] EMBL CD130229 [ CTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTATCTCTTAGCTAATCTTC CA GA ATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAACGAAATCTT ] [+] EMBL CD080784 [ ccTAGCCAANATTCGGCACGAGGCATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCAAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTNCAA ] [+] EMBL CD079436 [ CCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACATGCATGTCATCCGTCGGAAACTTTGAATGATTCTCAAAATACGCCTTCATGTTCTATAGATTCAGCTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGTATTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATGCAACAGTCCTGGGGATTTTTCCTCTATTTATTCGCGCACACATGGTCATCTTGAGGAAGGTGATGACTCTACTAGTACTAGTAGAGATGATGAGGAAAACCTACGACCATACATGAAGCTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTGCACAGCACCTGACAATTTGAACTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTACTGTATTGTAATAACTCTTATTCAAGGAATCTCGCTGCCGAG AATGTGCTATAATCTATAAACTATTACATGTATCGCTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACCAT ] [+] EMBL CD079425 [ CCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTG CGAGAAATGTGCTATAATCTAATAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGNTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACAAT ] [-] EMBL CD073698 [ GTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTG CGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTAAGCTGATATCATACAATC] [-] EMBL CD136728 [ TCCGTCAGAAACTNTGAATGATTCTCAAAATAAGCCTCCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATCCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTG CGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTAT ] consensusID : consensus_9812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 536 fasta sequence [AAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACAGTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCTTCTATAAACAGGACATGATTACAATGTGGATAAGTCCTAGACCGTCGGACCACTATCATAACTACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACAATC] [-] EMBL CD076011 [AAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACAGTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCTTCTATAAACAGGACATGATTACAATGTGGATAAGTCCTAGACCGTCGGACCACTATCATAACTACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACAATC] [-] EMBL CD074705 [ CAATCTATGGGTTTCACAACCCCTGCCAATTTGAATTGATCTGTCAAGAGCAAATTACAAGATTTTGGATCATATCCTAATGTATTTTAATAACTTTTTTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATCCAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9812#0 TAATGTGCCCCCGAAAATAGCTAATACTAATATCCTTTCACCTACACCAAGTGTGGTTGT 60 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 ATTTCCAAAAACTAATGTATTTATACCATCGGTATTCGCTCCAGTTTGTAAAGATTCTTC 120 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 CAATAATTCATCGACCCCAAATCACTCCTGTCATGTGGGAGAACTACAGTTTCGCAATTC 180 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 ACCGTTGGATAACGTTGTTAAACGTCTCTGTGAAAGCAATCCATCTGGTAGCTCTGAATC 240 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 TTCTACACTTCCATGTAATAACAAAGTAACTGAACCCCCGAAGTTGTCATCGAGCGTAAA 300 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 TTCTCAGAATATGCCTATCAGTTCGGTTTCAAGTAATCAATGTACCGATTTCATATTCGG 360 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 CCATAACGTTTCGGAACGCGTCACAAATGCTTCTTTATCTACAGTCGTTAACCGTGATAT 420 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 CTCTGGCAAGGATCTTCCAGTAGAGTCTTCAGAGTCAAACGACCACAGTTTGTCTCCGGA 480 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 AAAAGAAGAGAGTGTAGATGCTTCTGAAACTGGTGAGCATTGTACTGTTCTTCCTAGTAA 540 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 ACAAACACTAGAAGAATCTGCCGCTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTA 600 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 TCTCTTAGCTAATCTTCCAGAATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTAC 660 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 TCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCG 720 consensus_9812#1 ------------------------------------------------------------ consensus_9812#0 TGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCA 780 consensus_9812#1 -----------------------------------------------------------A 1 * consensus_9812#0 AGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCA 840 consensus_9812#1 AGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCA 61 ************************************************************ consensus_9812#0 AACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGA 900 consensus_9812#1 AACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGA 121 ************************************************************ consensus_9812#0 TGAACGCTCTATTCGTCTGACTACAGTCTGTCATCCGTCAGAAACTTTGAATGATTCTCA 960 consensus_9812#1 TGAACGCTCTATTCGTCTGACTACAGTCTGTCATCCGTCAGAAACTTTGAATGATTCTCA 181 ************************************************************ consensus_9812#0 AAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCT 1020 consensus_9812#1 AAATAAGC-------TTCTATAAA-----------------CAGGA-------------- 203 ******** ******* * *** * consensus_9812#0 ACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTAT 1080 consensus_9812#1 ----------------CATGA--------------------------------------- 208 *** * consensus_9812#0 AAACACTTTTACTAGTCGTTTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGC 1140 consensus_9812#1 ------------------------------------------TTACAATGTGGATA---- 222 * ** * *** consensus_9812#0 ATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGA 1200 consensus_9812#1 -------AGTCCTAG-----------------------------ACCGTCG--------- 237 ****** * * *** consensus_9812#0 AGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAA 1260 consensus_9812#1 ----GACCACTATCATAAC---------------------------------TACATGAA 260 ** *** ** ** ******** consensus_9812#0 GTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACC 1320 consensus_9812#1 GTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACC 320 ************************************************************ consensus_9812#0 TGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGT 1380 consensus_9812#1 TGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGT 380 ************************************************************ consensus_9812#0 ATTTTAATAACTTTTCTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAAT 1440 consensus_9812#1 ATTTTAATAACTTTTCTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAAT 440 ************************************************************ consensus_9812#0 ATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACAT 1500 consensus_9812#1 ATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACAT 500 ************************************************************ consensus_9812#0 ATACATGTCTATTTATTATGCTGATATCATACAATC 1536 consensus_9812#1 ATACATGTCTATTTATTATGCTGATATCATACAATC 536 ************************************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||