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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 800 fasta sequence
[CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGACTTTGAACATAGGATTATTTTGCGCCGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAAGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT-TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCACGAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATCACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAACCGCAACTGCGANNCTCCAATCGAATTNN]
[+] EMBL CD186583 [CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGACTTTGAACATAGGATTATTTTGCGCCGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAAGACTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTCTATTTTTTCATACCTGACATT ]
[-] EMBL CD142464 [ CCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAGGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCCCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACT ]
[-] EMBL CD145831 [ TTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGC ]
[+] EMBL CD116884 [ GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG ]
[+] EMBL CD116998 [ GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGTATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG ]
[+] EMBL CD117097 [ GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGTATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG ]
[-] EMBL CD090861 [ AAACTTTNTCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCACGAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATCACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAACCGCAACTGCGANNCTCCAATCGAATTNN]
consensusID : consensus_9816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 681 fasta sequence
[ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAATGACAATCCAACTTTCGACCGCTGAGACGAGGTGATCCCGAGTCTTTTGACGCGCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACCGGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTCGCCGCGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTCGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAAA]
[-] EMBL CD191403 [ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAATGACAATCCAACTTTCGACCGCTGAGACGAGGTGATCCCGAGTCTTTTGACGCGCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACCGGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTCGCCGCGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAGATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAAC ]
[-] EMBL CD184997 [ CGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTATTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTG ]
[+] EMBL CD144595 [ ACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTCGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAA ]
[-] EMBL CD072801 [ CTCTTTTTGCTCTAACACGATNTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAGCCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCTTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTTGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9816#0 CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGAC-TTTGAACATAGGATTATTTTGCGC 59
consensus_9816#1 ----ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTG 56
** * * * * ****** * * *** * ** *
consensus_9816#0 CGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCT 119
consensus_9816#1 TCGTTTCGAATGACAATCC---AACTTTCGACCGC--TGAGACGAGGTGATCCCGAGTCT 111
* * * * ** * ** ** * ** * ** * ** ***
consensus_9816#0 ACTAGTAAAGGTTCAAGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGT 179
consensus_9816#1 TTTGACGC-GCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACC 170
* * ** *** * *** ** ** * * * * *** * *
consensus_9816#0 TTAGCCGTCAGTCG--GGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGT 237
consensus_9816#1 GGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTC---GCCGCGAAGCGGTGACAAACC 227
* ** * *** * *** * * * * * * * *
consensus_9816#0 GTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCAC 297
consensus_9816#1 TTCCACTCG----ACGGCGTTC-------CGTCTC-----TTTCATTAGGTCTTG----- 266
***** * * **** * ***** **** ** * *
consensus_9816#0 CATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTT 357
consensus_9816#1 CAAATTTAAG--GGATC-ACTGGG----ATTTAAGGT----GTTTTTTGATGCTCGAACA 315
** ***** * *** * * ** * * **** ** * * ** ***
consensus_9816#0 CATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACC 417
consensus_9816#1 CTTC-TTTTTCTTCGGTTTAGAAAACGAG--AGCGAGTGAAAGAGTTGTCTCTTTTTGCT 372
* ** ** * * * * * ** * * *** * * * * * * ** * *
consensus_9816#0 TGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTG--- 474
consensus_9816#1 CTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGT-CAGTAGTGGTATTTGACT 431
* ** * * ** *** ** * * * * ** ****
consensus_9816#0 --CAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTTTC 532
consensus_9816#1 TCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCC 491
*** *** *** * * * **** * * *** ** ** * * * *
consensus_9816#0 AAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCAC 592
consensus_9816#1 CGGCGGTCGAT---TGACTGTAGGGTGTGGATACCAATT-TCCGAAATGTCTTGAAGCA- 546
** * * * * *** ** ** * * * ** * * **** * **
consensus_9816#0 GAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATC 652
consensus_9816#1 ACACCTCTCGGC-------TGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACG 599
*** *** * * *** * * * * ** * *** * * *
consensus_9816#0 ACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACT 712
consensus_9816#1 AGAATAACTTGC--------AGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAAT 651
* ***** ** * *** * *** ** * * ** ** *
consensus_9816#0 TAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAAC 772
consensus_9816#1 TAAT--CCGACGAAGATGGCCGACATTCAAAA---------------------------- 681
** ** * ** * * ** * **
consensus_9816#0 CGCAACTGCGANNCTCCAATCGAATTNN 800
consensus_9816#1 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||