cluster # 9817

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Schistosoma mansoni
cluster # 9817 cluster # 9817 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9817#0 length = 648 sequences # 10

consensus_9817#1 length = 481 sequences # 1

consensusID : consensus_9817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 648
fasta sequence

                              [TTAAATTAAACTTTACGTGATGTCAAA-AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTTACTTAACAAGTTC]

[+] EMBL AI067404             [TTAGATTAAACTTTACGTGATGTCAAAGGAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAGCACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAANAGTGGATCGTATATTTAAGAGATCAACGAGAAAACCGGTGCATATGTGCANATTTCACACAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGG                                                                                                                                                                              ]
[+] EMBL AI067759             [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAAC                                                                                                                                                                                                 ]
[+] EMBL AI067801             [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAA CGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTC                                                                                                                                                                                                        ]
[+] EMBL AI067236             [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGA                                                                              ]
[+] EMBL AI067938             [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTTACTTAACAAGTTC]
[+] EMBL AI067273             [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAAT                     ]
[+] EMBL AI067251             [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATTCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAG                                                                      ]
[+] EMBL AI068024             [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCT                                                                                                                                                                                                       ]
[+] EMBL AI067715             [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATACGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAA CGGTGCATATGTGCACATTTCACACAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGGTGT                                                                                                                                                                                    ]
[+] EMBL AI067425             [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTAC                                                                                                                                                                                                                                                                                                                         ]




>consensus_9817#0
TTAAATTAAACTTTACGTGATGTCAAAAAACTAAACATTTACTTAGCATTACTATTAGAG
GTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGG
AAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAG
GATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAG
TCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAA
CAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTAT
AGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAAT
TTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCT
AGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATC
AGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCC
AACTGGTTCGCCATATGCAACACCAATTATTCCTTACTTAACAAGTTC

consensusID : consensus_9817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATCCTTAATTCTACATCCGTACATCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCACATCAAACTATTATTTCAAACTAATGGATATGAATCCGCTGATTCAGAGTATAGACATCAACCACCAAC]

[+] EMBL CD077343             [GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATCCTTAATTCTACATCCGTACATCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCACATCAAACTATTATTTCAAACTAATGGATATGAATCCGCTGATTCAGAGTATAGACATCAACCACCAAC]




>consensus_9817#1
GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAA
CATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAG
CTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATAC
AAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAAT
TGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATAC
TAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATCCTTAAT
TCTACATCCGTACATCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCACATCAAAC
TATTATTTCAAACTAATGGATATGAATCCGCTGATTCAGAGTATAGACATCAACCACCAA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9817#0      -------------------------TTAAATTAAACTTTACGTGATGTCAAAAAACTAAA 35
consensus_9817#1      GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAA 60
                                               ***********************************

consensus_9817#0      CATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAG 95
consensus_9817#1      CATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAG 120
                      ************************************************************

consensus_9817#0      CTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATAC 155
consensus_9817#1      CTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATAC 180
                      ************************************************************

consensus_9817#0      AAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAAT 215
consensus_9817#1      AAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAAT 240
                      ************************************************************

consensus_9817#0      TGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATAC 275
consensus_9817#1      TGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATAC 300
                      ************************************************************

consensus_9817#0      TAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTAC 335
consensus_9817#1      TAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATC-----C 355
                      ******************************************** *  * * **     *

consensus_9817#0      CGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAG 395
consensus_9817#1      TTAATTCTACATCCG-TACA-TCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCAC 413
                        ***  **** * * **   *   *    * ***    *  *    *   ** **  * 

consensus_9817#0      AGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAAC 455
consensus_9817#1      ATCAAACTATTATTTCAAACTAA--TGGATATGAATC-CGCTGATTCAGAGTATAGACAT 470
                      *  ****   *   *      **  *  * *  **** **   *****   * *    * 

consensus_9817#0      GATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAA 515
consensus_9817#1      CAACCACCAAC------------------------------------------------- 481
                       *  **                                                      

consensus_9817#0      ATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTC 575
consensus_9817#1      ------------------------------------------------------------
                                                                                  

consensus_9817#0      AAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTT 635
consensus_9817#1      ------------------------------------------------------------
                                                                                  

consensus_9817#0      ACTTAACAAGTTC 648
consensus_9817#1      -------------