These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 648 fasta sequence [TTAAATTAAACTTTACGTGATGTCAAA-AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTTACTTAACAAGTTC] [+] EMBL AI067404 [TTAGATTAAACTTTACGTGATGTCAAAGGAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAGCACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAANAGTGGATCGTATATTTAAGAGATCAACGAGAAAACCGGTGCATATGTGCANATTTCACACAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGG ] [+] EMBL AI067759 [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAAC ] [+] EMBL AI067801 [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAA CGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTC ] [+] EMBL AI067236 [TTAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGA ] [+] EMBL AI067938 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTTACTTAACAAGTTC] [+] EMBL AI067273 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAAT ] [+] EMBL AI067251 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAAATGTTATTGCTACAGATTCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTCAAG ] [+] EMBL AI068024 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCT ] [+] EMBL AI067715 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTACCGAATAGTACAGCTGGTATGGTTATACGAAAAGGTGGATCGTATATTTAAGAGATCAAAGAGAAAA CGGTGCATATGTGCACATTTCACACAAATCTCGTGAATTCAATCTCTTAGAACGATGCATTGGTGT ] [+] EMBL AI067425 [ TAAATTAAACTTTACGTGATGTCAAA AAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTAC ] consensusID : consensus_9817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATCCTTAATTCTACATCCGTACATCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCACATCAAACTATTATTTCAAACTAATGGATATGAATCCGCTGATTCAGAGTATAGACATCAACCACCAAC] [+] EMBL CD077343 [GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAACATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAGCTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATACAAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAATTGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATACTAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATCCTTAATTCTACATCCGTACATCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCACATCAAACTATTATTTCAAACTAATGGATATGAATCCGCTGATTCAGAGTATAGACATCAACCACCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9817#0 -------------------------TTAAATTAAACTTTACGTGATGTCAAAAAACTAAA 35 consensus_9817#1 GCTTCAAGTCCGACGTTACAGCTCCTTAAATTAAACTTTACGTGATGTCAAAAAACTAAA 60 *********************************** consensus_9817#0 CATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAG 95 consensus_9817#1 CATTTACTTAGCATTACTATTAGAGGTTGTTGTTAACAGAATGTCCGGCAGTCACTCAAG 120 ************************************************************ consensus_9817#0 CTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATAC 155 consensus_9817#1 CTCTGATGACAGCAGCGATTCCAGGAAAAGACCCCGGGAGAAAGATATGGACCCAGATAC 180 ************************************************************ consensus_9817#0 AAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAAT 215 consensus_9817#1 AAGTCCAAAACGTCCAAACTGTGAGGATAACGTCCAGCTGAAAATATTGGTTCCATCAAT 240 ************************************************************ consensus_9817#0 TGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATAC 275 consensus_9817#1 TGCTGCTGGAGCAGTTATTGGGAAGTCTGGCGAGGCCATCGGCCGAATTCAGAAAGATAC 300 ************************************************************ consensus_9817#0 TAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGGTGAAAATTCTTGTAC 335 consensus_9817#1 TAATACAAAGGTCAAGATATCAAAACAAGATGAATTCTATCCTGTTTCAGAATC-----C 355 ******************************************** * * * ** * consensus_9817#0 CGAATAGTACAGCTGGTATGGTTATAGGAAAAGGTGGATCGTATATTTAAGAGATCAAAG 395 consensus_9817#1 TTAATTCTACATCCG-TACA-TCCCAACTCATGGTTAGACTCAAGGCTTTCAGGTCTCAC 413 *** **** * * ** * * * *** * * * ** ** * consensus_9817#0 AGAAAACCGGTGCATATGTGCAAATTTCACAAAAATCTCGTGAATTCAATCTCTTAGAAC 455 consensus_9817#1 ATCAAACTATTATTTCAAACTAA--TGGATATGAATC-CGCTGATTCAGAGTATAGACAT 470 * **** * * ** * * * **** ** ***** * * * consensus_9817#0 GATGCATTGTTGTTGCCGGTGAGCTAGATCAAACACGCTCTGCTGTTCATTTAATTTTAA 515 consensus_9817#1 CAACCACCAAC------------------------------------------------- 481 * ** consensus_9817#0 ATGTTATTGCTACAGATCCACAATCAGCTAGTTGTCCAAATCTTTCATATCATGATATTC 575 consensus_9817#1 ------------------------------------------------------------ consensus_9817#0 AAGGACCAGTAGCTAGTGTTTATCCAACTGGTTCGCCATATGCAACACCAATTATTCCTT 635 consensus_9817#1 ------------------------------------------------------------ consensus_9817#0 ACTTAACAAGTTC 648 consensus_9817#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||