These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9823#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1438 fasta sequence [TCGAGCCAGATTCGGCCGAGTCCATTTACAATTTGGGATGTTATTTTATGGATTGGCATAGGCGGTTTATCTATCATCGGATCACATACTTATCTAGTTTGGTATGGATCTGGTACATGGTATGGTCATCCAACAATTTTATCGTTGAAACAGACTATTATGGAATCACTACCTGATTCACAATCGTCATCTTCAACCACAGCATCATCATCCTTGTCAAATGGCGCATTTGGTGTCGCTCTAAAAGCTTTGATATCTTCAATAAATTCTGAATATCAACGTTCTGACAAATTCGTAGCAGGTCAAGGAAGTTTATCAACTAATTGGTCTGGTCGGCGATTTGTTATCACAGATTCATGGATTTTAACTTCACGTTTTACTGAATTCAAAATAGTTAAACAATCTTCGGAAAATATGTTAGCTGTTGTTGTTTCAGCATTTTCAGTTCTGGATCCAAGCTCTCTAACTCAAGATGGTCAACCTGACGGAGAAAGTCTCGGTGTGCAAACAATTGTTACAGTGAGATTTATACGTACAGATACAGGAGTGTGTTTGCTTAGTTTTGGATTTCCAGCGTCAAATTTAGATGAGTTGCGCAGTAAACTACGTTTCCCTTTAATACAAGCACAAGGTGTACAATTGGAGCCAACAATTATTCAAAGATTTATTGAAGCATTTACACAAGTCGTTGATGAAAATCAACCGGTAAACCTACCATCTGGCTATGAGTTGGGACAGTGCATTGGATGTATGGTACAACAAGTTAATGTCACTTTAAATCGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGTCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGTTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTTTCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACATTTGAACAATTCTTCACCCATACAAACATATATATATATATATATATATATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTC-AATGACTTGCTCGTGATATTTGTTTTTTTTTTTACCTCAGTAACTATTGAGCAAAAGCTGGTTTCTTTATCGTTCCCCTTTCTATAGGTGGGGTGTTCTTTTCTTCATTCTCGTTTTTCTGGTTTCTTATTCTGTTCATAATTTTTATAATTCTTAACTTGTTTGTAGTGTATAGTGGATTAAACAAGTTGTGTATAATAAATTGGT] [+] EMBL CD082037 [TCGAGCCAGATTCGGCCGAGTCCATTTACAATTTGGGATGTTATTTTATGGATTGGCATAGGCGGTTTATCTATCATCGGATCACATACTTATCTAGTTTGGTATGGATCTGGTACATGGTATGGTCATCCAACAATTTTATCGTTGAAACAGACTATTATGGAATCACTACCTGATTCACAATCGTCATCTTCAACCACAGCATCATCATCCTTGTCAAATGGCGCATTTGGTGTCGCTCTAAAAGCTTTGATATCTTCAATAAATTCTGAATATCAACGTTCTGACAAATTCGTAGCAGGTCAAGGAAGTTTATCAACTAATTGGTCTGGTCGGCGATTTGTTATCACAGATTCATGGATTTTAACTTCACGTTTTACTGAATTCAAAATAGTTAAACAATCTTCGGAAAATATGTTAGCTGTTGTTGTTTCAGCATTTTCAGTTCTGGATCCAAGCTCTCTAACTCAAGATGGTCAACCTGACGGAGAAAGTCTCGGTGTGCAAACAATTGTTACAGTGAGATTTATACGTACAGATACAGGAGTGTGTTTGCTTAGTTTTGGATTTCCAGCGTCAAATTTAGATGAGTTGCGCAGTAAACTACGTTTCCCTTTAATACAAGCACAAGGTGTACAATTGGAGCCAACAATTATTCAAAGATTTATTGAAGCATTTACACAAGTCGTTGATGAAAATCAACCGGTAAACCTACCATCTGGCT ] [+] EMBL CD079749 [ GTGTGTTTGCTTAGTTTTGGATTTCCAGCGTCAAATTTAGATGAGTTGCGCAGTAAACTACGTTTCCCTTTAATACAAGCACAAGGTGTACAATTGGAGCCAACAATTATTCAAAGATTTATTGAAGCATTTACACAAGTCGTTGATGAAAATCAACCGGTAAACCTACCATCTGGCTATGAGTTGGGACAGTGCATTGGATGTATGGTACAACAAGTTAATGTCACTTTAAATCGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGTCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGTTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTTTCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACATTTGAACAATTCTTCAACCATACAAACATATATATATATATATATATATATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTC AATGACTTGCT ] [+] EMBL CD169813 [ GGAGCCAACAATTATTCAAAGATTTATTGAAGCATTTACACAAGTCGTTGATGAAAATCAACCGGTAAACCTACCATCTGGCTATGAGTTGGGACAGTGCATTGGATGTATGGTACAACAAGTTAATGTCACTTTAAATCGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAACTAATAGTAATCAGTCGTTGAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGTTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTTTCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTT ] [-] EMBL CD074008 [ AATGTCACTNTAAATCGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGTCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGTTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTTTCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACATTTGAACAATTCTTCACCCATACAAACATATATATATATATATATATATATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTCAAATGACTTGCTC ] [-] EMBL AI976116 [ TGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATATGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACATTTGAACAATTCTTCACCCATGCAAACATATATATATATATATATATATATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTCAAATGACTTGCTCGTGATATTTGTTTTTTTTTTTACCTCAGTAACTATTGAGCAAAAGCTGGTTTCTTTATCGTTCCCCTTTCTATAGGTGGGGTGTTCTTTTCTTCATTCTCGTTTTTCTGGTTTCTTATTCTGTTCATAATTTTTATAATTCTTAACTTGTTTGTAGTGTATAGTGGATTAAACAAGTTGTGTATAATAAATTGGT] consensusID : consensus_9823#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 648 fasta sequence [CGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGTCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGTTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTTTCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACATTTGAACAATTCTTCACCCATACAAACATATATATATATATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTCAAATGACTTGCTCGTGATATTTGTTTTTTTTTTACCTCAGTAACTATTGAGCAAAAGCTGGTTTCTTTATCGTTCCCCTTTCTATAGGTGGGGTGTTCTTTTCTTCATTCTCGTTTTTCTGGTTTCTTATTCTGTTCATAATTTTTATAATTCTTAACTTGTTTGTAGTGTATAGTGGATTAAACAAGTTGTGTATAATAAATTGGT] [-] EMBL CD075652 [CGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGTCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGTTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTTTCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACATTTGAACAATTCTTCACCCATACAAACATATATATATATATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTCAAATGACTTGCTCGTGATATTTGTTTTTTTTTTACCTCAGTAACTATTGAGCAAAAGCTGGTTTCTTTATCGTTCCCCTTTCTATAGGTGGGGTGTTCTTTTCTTCATTCTCGTTTTTCTGGTTTCTTATTCTGTTCATAATTTTTATAATTCTTAACTTGTTTGTAGTGTATAGTGGATTAAACAAGTTGTGTATAATAAATTGGT] [-] EMBL CD074007 [ CTATTGAGCAAAAGCTGGTTTCTTTATCGTTCCCCTTTCTATAGGTGGGGTGTTCTTTTCTTCATTCTCGTTTTTCTGGTTTCTTATTCTGTTCATAATTTTTATAATTCTTAACTTGTTTGTAGTGTATAGTGGATTAAACAAGTTGTGTATAATAAA ] consensusID : consensus_9823#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 565 fasta sequence [TGAAAATCAACCGGTAAACCTACCATCTGGCTATGAGTTGGGACAGTGCATTGGATGTATGGTACAACAAGTTAATGTCACTTTAAATCGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGTCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGCTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTTTCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACATTTGAACAATTCTTCAACCATACAAACATATATATATATATATATATATATATATATATATATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTAAATGACTCGCTCGA] [+] EMBL CD079168 [TGAAAATCAACCGGTAAACCTACCATCTGGCTATGAGTTGGGACAGTGCATTGGATGTATGGTACAACAAGTTAATGTCACTTTAAATCGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGTCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGTTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTTTCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGACTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGAAAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACATTTGAACAATTCTTCAACCATACAAACATATATATATATATATATATATATATATATATATATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTAAATGACTCGCTCGA] [+] EMBL CD166963 [ CACCTCTTCTTCATTATCATTAGCTGATGATAGATATCAGCCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGGGCTTAGAATGCTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAAC ] [+] EMBL CD166961 [ CACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGCCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGCTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAAC ] [+] EMBL CD166962 [ CACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAGTCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGCTTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9823#0 TCGAGCCAGATTCGGCCGAGTCCATTTACAATTTGGGATGTTATTTTATGGATTGGCATA 60 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 GGCGGTTTATCTATCATCGGATCACATACTTATCTAGTTTGGTATGGATCTGGTACATGG 120 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 TATGGTCATCCAACAATTTTATCGTTGAAACAGACTATTATGGAATCACTACCTGATTCA 180 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 CAATCGTCATCTTCAACCACAGCATCATCATCCTTGTCAAATGGCGCATTTGGTGTCGCT 240 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 CTAAAAGCTTTGATATCTTCAATAAATTCTGAATATCAACGTTCTGACAAATTCGTAGCA 300 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 GGTCAAGGAAGTTTATCAACTAATTGGTCTGGTCGGCGATTTGTTATCACAGATTCATGG 360 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 ATTTTAACTTCACGTTTTACTGAATTCAAAATAGTTAAACAATCTTCGGAAAATATGTTA 420 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 GCTGTTGTTGTTTCAGCATTTTCAGTTCTGGATCCAAGCTCTCTAACTCAAGATGGTCAA 480 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 CCTGACGGAGAAAGTCTCGGTGTGCAAACAATTGTTACAGTGAGATTTATACGTACAGAT 540 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 ACAGGAGTGTGTTTGCTTAGTTTTGGATTTCCAGCGTCAAATTTAGATGAGTTGCGCAGT 600 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 AAACTACGTTTCCCTTTAATACAAGCACAAGGTGTACAATTGGAGCCAACAATTATTCAA 660 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 AGATTTATTGAAGCATTTACACAAGTCGTTGATGAAAATCAACCGGTAAACCTACCATCT 720 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 --------------------------------TGAAAATCAACCGGTAAACCTACCATCT 28 consensus_9823#0 GGCTATGAGTTGGGACAGTGCATTGGATGTATGGTACAACAAGTTAATGTCACTTTAAAT 780 consensus_9823#1 ------------------------------------------------------------ consensus_9823#2 GGCTATGAGTTGGGACAGTGCATTGGATGTATGGTACAACAAGTTAATGTCACTTTAAAT 88 consensus_9823#0 CGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAG 840 consensus_9823#1 CGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAG 60 consensus_9823#2 CGTCAATGTGAAAGTTCACTCACCTCTTCTTCATCATCATTAGCAAATAATAGTAATCAG 148 ************************************************************ consensus_9823#0 TCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGT 900 consensus_9823#1 TCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGT 120 consensus_9823#2 TCGTTAAATAATAATCAATGCGGTATATGTTATTGTAGACCATTATGGTGCTTAGAATGC 208 *********************************************************** consensus_9823#0 TTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTT 960 consensus_9823#1 TTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTT 180 consensus_9823#2 TTAGCACGTTGGTTTGCTTCAAGACAAACTAATATGCATCGTCCAACAACTCAATGGCTT 268 ************************************************************ consensus_9823#0 TCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGA 1020 consensus_9823#1 TCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGA 240 consensus_9823#2 TCTGGACGTGTGCCTTGTCCAACATGTCGCACATATTTTTGTGCTCGTGATGTATCACGA 328 ************************************************************ consensus_9823#0 CTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGA 1080 consensus_9823#1 CTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGA 300 consensus_9823#2 CTTATTATTTCTCATCAACAATTGGACTGAAATCTGTTGTATTTAACAGATAACATCAGA 388 ************************************************************ consensus_9823#0 AAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACAT 1140 consensus_9823#1 AAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACAT 360 consensus_9823#2 AAATGTGCTTCATTTGTGGTACCAATCGGTTTTCGCCTTCTACCCATATTTCGTGTACAT 448 ************************************************************ consensus_9823#0 TTGAACAATTCTTCACCCATACAAACATATATATATATATATATATATAT---------- 1190 consensus_9823#1 TTGAACAATTCTTCACCCATACAAACATATATATATATAT-------------------- 400 consensus_9823#2 TTGAACAATTCTTCAACCATACAAACATATATATATATATATATATATATATATATATAT 508 *************** ************************ consensus_9823#0 --ATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTCAA-TGACTTGCTCGTGA 1247 consensus_9823#1 --ATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTCAAATGACTTGCTCGTGA 458 consensus_9823#2 ATATATAATATGCCCTGCCTTACTGTCTTTCTTCCTGCCCTTAAA-TGACTCGCTCGA-- 565 **************************************** ** ***** ***** consensus_9823#0 TATTTGTTTTTTTTTTTACCTCAGTAACTATTGAGCAAAAGCTGGTTTCTTTATCGTTCC 1307 consensus_9823#1 TATTTGTTTTTTTTTT-ACCTCAGTAACTATTGAGCAAAAGCTGGTTTCTTTATCGTTCC 517 consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 CCTTTCTATAGGTGGGGTGTTCTTTTCTTCATTCTCGTTTTTCTGGTTTCTTATTCTGTT 1367 consensus_9823#1 CCTTTCTATAGGTGGGGTGTTCTTTTCTTCATTCTCGTTTTTCTGGTTTCTTATTCTGTT 577 consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 CATAATTTTTATAATTCTTAACTTGTTTGTAGTGTATAGTGGATTAAACAAGTTGTGTAT 1427 consensus_9823#1 CATAATTTTTATAATTCTTAACTTGTTTGTAGTGTATAGTGGATTAAACAAGTTGTGTAT 637 consensus_9823#2 ------------------------------------------------------------ consensus_9823#0 AATAAATTGGT 1438 consensus_9823#1 AATAAATTGGT 648 consensus_9823#2 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||