cluster # 9827

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Schistosoma mansoni
cluster # 9827 cluster # 9827 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9827#0 length = 886 sequences # 8

consensus_9827#1 length = 464 sequences # 2
consensus_9827#2 length = 186 sequences # 1

consensusID : consensus_9827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 886
fasta sequence

                              [CGGTTTTACTCTTGTGATTTGTTGCATGACTTTCTGACTGTGACTATCATATTCCGGTTATAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATAGTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATACTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATCCACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT-GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA-GCAACCCAA-GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCAC-AGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGA-TAGATCGTATACTCAATATGTATTGGATATTTTCTTGCCTTCTTTCACTNTNNGTCTTNCTTTTAGNTNTCTGTTNGATTCAACTNTACTAAAATGGGNTGAC-AGCTTTTTAATGTCCCTTTATACAAAACCAAATCTACCTATTCCTTNNTGTNNCACT-AGAATTNANTNNNGT-ACAT-AACATTNTAGNTCACTTTAATGGTACCTTGAANCAGNNTG-ATAANACCATATTTATTACA]

[+] EMBL CD079035             [CGGTTTTACTCTTGTGATTTGTTGCATGACTTTCTGACTGTGACTATCATATTCCGGTTATAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATAGTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATACTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATCCACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAAC CATAAATTTCCCAC AGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTT                                                                                                                                                                                                                                                                          ]
[+] EMBL CD081926             [                        CATGACTTTCTGACTGTGACTATCATATTCCGGTTATAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATAGTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATACTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATCCACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCAC AGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGA TAGATCGTATACTCAATATGTATTGGATATTTTCTTGCCTTCTTTCACTNTNNGTCTTNCTTTTAGNTNTCTGTTNGATTCAACTNTACTAAAATGGGNTGAC AGCTTTTTAATGTCCCTTTATACAAAACCAAATCTACCTATTCCTTNNTGTNNCACT AGAATTNANTNNNGT ACAT AACATTNTAGNTCACTTTAATGGTACCTTGAANCAGNNTG ATAANAC             ]
[+] EMBL CD078039             [                              TTTCTGACTGTGACTATCATATTCCGGTTATAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATAGTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATACTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BF936441             [                                                                                                                                                                                                               GGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATCCACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCACAAGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGATTAGATCGTATACTCAATATGTATTGTATATTTTCTTGCCTTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAAT GGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTT TTGT CCACTAAGAATTAATT   GTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAG TTGAATAAAAACATATTTATTACA]
[+] EMBL SMRAP029             [                                                                                                                                                                                                                                                                                                        GATCCACGGCTTGCCCGTTTAAT AGTCTAGCTGGTCAAACATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTHCTACAACACCAGCAAGGCAACCCAAGGTCAGTCTATTTCACAGgtc                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL SMRAP037             [                                                                                                                                                                                                                                                                                                        GATCCACGGYTTGCCCGTTT ATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGGTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACTGGGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA G GACCCAA GTCAGTCTTTTtcc                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD145808             [                                                                                                                                                                                                                                                                                                                                                    TCTGACTGATATCCTTTCCGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCAC AGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGA TAGATCGTATACTCAATATGTAT                                                                                                                                                                                                                             ]
[+] EMBL CD120732             [                                                                                                                                                                                                                                                                                                                                                                                                        CAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCA                                                                                                                                                                                                                                                                                                                                               ]




>consensus_9827#0
CGGTTTTACTCTTGTGATTTGTTGCATGACTTTCTGACTGTGACTATCATATTCCGGTTA
TAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATA
GTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATA
CTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTC
CGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATC
CACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTG
ACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACTGGGTTGCTTAACCATTCTA
GTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAA
CACCAGCAAGCAACCCAAGTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTG
GAACAAATAAATTTCCCACAGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTT
CATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGATAGATCGTATACT
CAATATGTATTGGATATTTTCTTGCCTTCTTTCACTNTNNGTCTTNCTTTTAGNTNTCTG
TTNGATTCAACTNTACTAAAATGGGNTGACAGCTTTTTAATGTCCCTTTATACAAAACCA
AATCTACCTATTCCTTNNTGTNNCACTAGAATTNANTNNNGTACATAACATTNTAGNTCA
CTTTAATGGTACCTTGAANCAGNNTGATAANACCATATTTATTACA

consensusID : consensus_9827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 464
fasta sequence

                              [GCATNTAATCCGTCTTATATGAATGGTAGTACAACACCAGCAAGCAACCCAAGTCAGTTTATTCCACAGTCTCCATCATTTAGTGGAAAACCTGGAACAAATAAATTTCCCACAGATTGTCGCGCCACTTTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGATAGATCGTATACTCAATATGTATTGTATATTTTCTTGCCTTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTTTTGTCCACTAAGAATTAATTGTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAGTTGAATAAAAACATATTTATTACAACTAGTGAAAAAAAAAAAAAAAAAAA]

[-] EMBL CD073487             [GCATNTAATCCGTCTTATATGAATGGTAGTACAACACCAGCAAGCAACCCAAGTCAGTTTATTCCACAGTCTCCATCATTTAGTGGAAAACCTGGAACAAATAAATTTCCCACAGATTGTCGCGCCACTTTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGATAGATCGTATACTCAATATGTATTGTATATTTTCTTGCCTTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTTTTGTCCACTAAGAATTAATTGTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAGTTGAATAAAAACATATTTATTA                            ]
[-] EMBL AI395045             [                                                                                                                                        gGGAAGA TTAATTGCTTCATTGATTGTTAGGGTTA TCATGTT CCAAACCCCCTT TTATCGATAGATCGTATACTCAATATGTATTGTATATTTTCTTGCCTTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTTTTGTCCACTAAGAATTAATTGTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAGTTGAATAAAAACATATTTATTACAACTAGTGAAAAAAAAAAAAAAAAAAA]




>consensus_9827#1
GCATNTAATCCGTCTTATATGAATGGTAGTACAACACCAGCAAGCAACCCAAGTCAGTTT
ATTCCACAGTCTCCATCATTTAGTGGAAAACCTGGAACAAATAAATTTCCCACAGATTGT
CGCGCCACTTTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTT
GCCAAACCCCCTTATTATCGATAGATCGTATACTCAATATGTATTGTATATTTTCTTGCC
TTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTT
GACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTTTTGTCCACTA
AGAATTAATTGTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAGTTGAAT
AAAAACATATTTATTACAACTAGTGAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9827#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [CATTGAAWGGATAGGGGTATTCATGTTGCCAAACCCCCCTTATTACCGATAGYSGTATACVCAATATGTATTGTATATTGTCTTGCCTSTCTTTCACTTTTGTRCTRCCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACGAAATC]

[-] EMBL SMRAP035             [CATTGAAWGGATAGGGGTATTCATGTTGCCAAACCCCCCTTATTACCGATAGYSGTATACVCAATATGTATTGTATATTGTCTTGCCTSTCTTTCACTTTTGTRCTRCCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACGAAATC]




>consensus_9827#2
CATTGAAWGGATAGGGGTATTCATGTTGCCAAACCCCCCTTATTACCGATAGYSGTATAC
VCAATATGTATTGTATATTGTCTTGCCTSTCTTTCACTTTTGTRCTRCCTTTTAGTTTTC
TGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAAC
GAAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9827#1      ------------------------------------------------------------
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      CGGTTTTACTCTTGTGATTTGTTGCATGACTTTCTGACTGTGACTATCATATTCCGGTTA 60
                                                                                  

consensus_9827#1      ------------------------------------------------------------
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      TAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATA 120
                                                                                  

consensus_9827#1      ------------------------------------------------------------
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      GTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATA 180
                                                                                  

consensus_9827#1      ------------------------------------------------------------
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      CTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTC 240
                                                                                  

consensus_9827#1      ------------------------------------------------------------
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      CGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATC 300
                                                                                  

consensus_9827#1      ------------------------------------------------------------
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      CACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTG 360
                                                                                  

consensus_9827#1      ------------------------------------------------------------
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      ACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACTGGGTTGCTTAACCATTCTA 420
                                                                                  

consensus_9827#1      --------------------------GCATNTAATCCGTCTTATATGAATGGTAGTACAA 34
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      GTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAA 480
                                                                                  

consensus_9827#1      CACCAGCAAGCAACCCAAGTCAGTTTATTCCACAGTCTCCATCATTTAGTGGAAAACCTG 94
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      CACCAGCAAGCAACCCAAGTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTG 540
                                                                                  

consensus_9827#1      GAACAAATAAATTTCCCACAGATTGTCGCGCCACTTTTACACTGGAAGATTTAATTGCTT 154
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      GAACAAATAAATTTCCCACAGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTT 600
                                                                                  

consensus_9827#1      CATTGAATG-ATAGGGGTATTCATGTTGCCAAACCCCC-TTATTATCGATAGATCGTATA 212
consensus_9827#2      CATTGAAWGGATAGGGGTATTCATGTTGCCAAACCCCCCTTATTACCGATAG-YSGTATA 59
consensus_9827#0      CATTGAATG-ATAGGGGTATTCATGTTGCCAAACCCCC-TTATTATCGATAGATCGTATA 658
                      ******* * **************************** ****** ******   *****

consensus_9827#1      CTCAATATGTATTGTATATTTTCTTGCCT-TCTTTCACTTTTGTTCTTTCTTTTAGTTTT 271
consensus_9827#2      CVCAATATGTATTGTATATTGTCTTGCCTSTCTTTCACTTTTGTRCTRCCTTTTAGTTTT 119
consensus_9827#0      CTCAATATGTATTGGATATTTTCTTGCCT-TCTTTCACTNTNNGTCTTNCTTTTAGNTNT 717
                      * ************ ***** ******** ********* *    **  ******* * *

consensus_9827#1      CTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAA 331
consensus_9827#2      CTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAA 179
consensus_9827#0      CTGTTNGATTCAACTNTACTAAAATGGGNTGACAGCTTTTTAATGTCCCTTTATACAAAA 777
                      ***** ********* ***********      *************** ** ********

consensus_9827#1      CCAAATCTACCTATTCCTTTT-GTCCACTAAGAATTAATTGTAACATA-AACATTTTAGT 389
consensus_9827#2      CGAAATC----------------------------------------------------- 186
consensus_9827#0      CCAAATCTACCTATTCCTTNNTGTNNCACTAGAATTNANTNNNGTACATAACATTNTAGN 837
                      * *****                                                     

consensus_9827#1      TCACTTTAATGTTACCTTGAAACAGTTGAATAAAAACATATTTATTACAACTAGTGAAAA 449
consensus_9827#2      ------------------------------------------------------------
consensus_9827#0      TCACTTTAATGGTACCTTGAANCAGNNTGATAANACCATATTTATTACA----------- 886
                                                                                  

consensus_9827#1      AAAAAAAAAAAAAAA 464
consensus_9827#2      ---------------
consensus_9827#0      ---------------