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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 740 fasta sequence
[TGTCCTGGAGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACTTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAG-AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAATCATTTACAACCTGTCCGCATTACAAGCTCAGGCCTTTGAGTGTACGTGAAAACTC-TTCAGAAGAAGGTGTAAAACTGGAAAGACTTCCATCTGAATGTTTAACTCATGTCCTGCGAACCTATGAGGAGATCCTCTAGNGTCGTCCGAN]
[-] EMBL CD189713 [TGTCCTGGAGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACTTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAG AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGC ]
[-] EMBL CD183701 [ CTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTACCGGCACACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAG AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGC ]
[-] EMBL CD141275 [ TACC AAGCTGCTCTAAGNAGATATAAGAAGATTTGATTATATATGCAAAATAA TGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAAT ]
[+] EMBL CD159660 [ ACCAGAGCTGCTCTAAG AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAATCATTTACAACCTGTCCGCATTACAAGCTCAGGCCTTTGAGTGTACGTGAAAACTCATTCAGAAGAAGGTGTA ]
[-] EMBL CD141538 [ CTCTAAG AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTNTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAAT ]
[-] EMBL CD159593 [ TTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAG TAAAAAAATCCAATCATTTACAACCTGTCCGCATTACAAGCTCAGGCCCTTGAGTGTACGTGAAAACTC TTCAGAAGAAGGTGTAAAACTGGAAAGACTTCCATCTGAATGTTTAA ]
[-] EMBL CD060786 [ acccTGTACGTGAAAACTC TTCAGAAGAAGGTGTAAAACTGGAAAGACTTCCATCTGAATGTTTAACTCATGTCCTGCGAACCTATGAGGAGATCCTCTAGNGTCGTCCGAN]
consensusID : consensus_9828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 698 fasta sequence
[TCGGCACGAGGTGCCTTTTCTTAGTCCAGACTGGAGATGTCCTGGAGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTA-TCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATATTTTAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGGAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAATC]
[+] EMBL CD083013 [TCGGCACGAGGTGCCTTTTCTTAGTCCAGACTGGAGATGTCCTGGAGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTA TCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATATTTTAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGGAGTGCCTTACTTTGGCAGAATCAT ]
[+] EMBL CD183614 [ AGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTA TCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAA CTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATATTTTAGTCCAAG ]
[-] EMBL CD076598 [ GAAAATGCC AAATTTANTCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTANAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATATTTTAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAATC]
consensusID : consensus_9828#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[CTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAGTACTTTTCTCATCGTTTTCATGTTTTAGATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCCAGC]
[-] EMBL CD189948 [CTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAGTACTTTTCTCATCGTTTTCATGTTTTAGATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9828#0 -------------------------------------TGTCCTGGAGGTCAGTGGCTAAA 23
consensus_9828#2 -------------------------------------------------------CTAAA 5
consensus_9828#1 TCGGCACGAGGTGCCTTTTCTTAGTCCAGACTGGAGATGTCCTGGAGGTCAGTGGCTAAA 60
*****
consensus_9828#0 GACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGA 83
consensus_9828#2 GACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGA 65
consensus_9828#1 GACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGA 120
************************************************************
consensus_9828#0 AACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAA 143
consensus_9828#2 AACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAA 125
consensus_9828#1 AACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAA 180
************************************************************
consensus_9828#0 GTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACTT 203
consensus_9828#2 GTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCT 185
consensus_9828#1 GTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCT 240
********************************************************** *
consensus_9828#0 TCAAGCAGGGACTACTCGTGAG-----------------------------------ATC 228
consensus_9828#2 TCAAGCAGGGACTACTCGTGAG-----------------------------------ATC 210
consensus_9828#1 TCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATC 300
********************** ***
consensus_9828#0 GCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGA 288
consensus_9828#2 GCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGA 270
consensus_9828#1 GCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGA 360
************************************************************
consensus_9828#0 GATATAAGAAGATTTGATTATATATGCAAA-----------------------------A 319
consensus_9828#2 GATATAAGAAGATTTGATTATATATGCAAAGTACTTTTCTCATCGTTTTCATGTTTTAGA 330
consensus_9828#1 GATATAAGAAGATTTGATTATATATGCAAA-----------------------------A 391
****************************** *
consensus_9828#0 TAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCT 379
consensus_9828#2 TAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCT 390
consensus_9828#1 TAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCT 451
************************************************************
consensus_9828#0 TAATTGAACTTCTAAAAGAGGTGCTCAAACAAG--------------------------- 412
consensus_9828#2 TAATTGAACTTCTAAAAGAGGTGCTCAAACAAG--------------------------- 423
consensus_9828#1 TAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATA 511
*********************************
consensus_9828#0 ------TCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAA 466
consensus_9828#2 ------TCCCAGC----------------------------------------------- 430
consensus_9828#1 TTTTAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAA 571
*** ***
consensus_9828#0 GAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATC 526
consensus_9828#2 ------------------------------------------------------------
consensus_9828#1 GAGAAAATCTAGAGAAAAATGAATATGATCATATTGGGAGTGCCTTACTTTGGCAGAATC 631
consensus_9828#0 ATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAA 586
consensus_9828#2 ------------------------------------------------------------
consensus_9828#1 ATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAA 691
consensus_9828#0 TCCAATCATTTACAACCTGTCCGCATTACAAGCTCAGGCCTTTGAGTGTACGTGAAAACT 646
consensus_9828#2 ------------------------------------------------------------
consensus_9828#1 TCCAATC----------------------------------------------------- 698
consensus_9828#0 CTTCAGAAGAAGGTGTAAAACTGGAAAGACTTCCATCTGAATGTTTAACTCATGTCCTGC 706
consensus_9828#2 ------------------------------------------------------------
consensus_9828#1 ------------------------------------------------------------
consensus_9828#0 GAACCTATGAGGAGATCCTCTAGNGTCGTCCGAN 740
consensus_9828#2 ----------------------------------
consensus_9828#1 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||