These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 740 fasta sequence [TGTCCTGGAGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACTTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAG-AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAATCATTTACAACCTGTCCGCATTACAAGCTCAGGCCTTTGAGTGTACGTGAAAACTC-TTCAGAAGAAGGTGTAAAACTGGAAAGACTTCCATCTGAATGTTTAACTCATGTCCTGCGAACCTATGAGGAGATCCTCTAGNGTCGTCCGAN] [-] EMBL CD189713 [TGTCCTGGAGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACTTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAG AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGC ] [-] EMBL CD183701 [ CTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTACCGGCACACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAG AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGC ] [-] EMBL CD141275 [ TACC AAGCTGCTCTAAGNAGATATAAGAAGATTTGATTATATATGCAAAATAA TGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAAT ] [+] EMBL CD159660 [ ACCAGAGCTGCTCTAAG AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAATCATTTACAACCTGTCCGCATTACAAGCTCAGGCCTTTGAGTGTACGTGAAAACTCATTCAGAAGAAGGTGTA ] [-] EMBL CD141538 [ CTCTAAG AGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTNTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAAT ] [-] EMBL CD159593 [ TTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAG TAAAAAAATCCAATCATTTACAACCTGTCCGCATTACAAGCTCAGGCCCTTGAGTGTACGTGAAAACTC TTCAGAAGAAGGTGTAAAACTGGAAAGACTTCCATCTGAATGTTTAA ] [-] EMBL CD060786 [ acccTGTACGTGAAAACTC TTCAGAAGAAGGTGTAAAACTGGAAAGACTTCCATCTGAATGTTTAACTCATGTCCTGCGAACCTATGAGGAGATCCTCTAGNGTCGTCCGAN] consensusID : consensus_9828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 698 fasta sequence [TCGGCACGAGGTGCCTTTTCTTAGTCCAGACTGGAGATGTCCTGGAGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTA-TCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATATTTTAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGGAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAATC] [+] EMBL CD083013 [TCGGCACGAGGTGCCTTTTCTTAGTCCAGACTGGAGATGTCCTGGAGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTA TCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATATTTTAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGGAGTGCCTTACTTTGGCAGAATCAT ] [+] EMBL CD183614 [ AGGTCAGTGGCTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTA TCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAA CTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATATTTTAGTCCAAG ] [-] EMBL CD076598 [ GAAAATGCC AAATTTANTCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTANAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATATTTTAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAAGAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATCATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAATCCAATC] consensusID : consensus_9828#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [CTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAGTACTTTTCTCATCGTTTTCATGTTTTAGATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCCAGC] [-] EMBL CD189948 [CTAAAGACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGAAACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAAGTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCTTCAAGCAGGGACTACTCGTGAGATCGCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGAGATATAAGAAGATTTGATTATATATGCAAAGTACTTTTCTCATCGTTTTCATGTTTTAGATAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCTTAATTGAACTTCTAAAAGAGGTGCTCAAACAAGTCCCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9828#0 -------------------------------------TGTCCTGGAGGTCAGTGGCTAAA 23 consensus_9828#2 -------------------------------------------------------CTAAA 5 consensus_9828#1 TCGGCACGAGGTGCCTTTTCTTAGTCCAGACTGGAGATGTCCTGGAGGTCAGTGGCTAAA 60 ***** consensus_9828#0 GACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGA 83 consensus_9828#2 GACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGA 65 consensus_9828#1 GACAAACGAAAGCGGCAGCATGTGGGAAAATGCCAAAATTTATCGGCTCAGAATGTTTGA 120 ************************************************************ consensus_9828#0 AACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAA 143 consensus_9828#2 AACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAA 125 consensus_9828#1 AACCATCAATGAGAATGTTGTAAAGCGATTGTGCCGGCAAACACTAGAAGATGAAATGAA 180 ************************************************************ consensus_9828#0 GTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACTT 203 consensus_9828#2 GTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCT 185 consensus_9828#1 GTCAACACCGTATGTTAGTGAATACCTCAAAGCCGTTTTCTACCAACCATATATACACCT 240 ********************************************************** * consensus_9828#0 TCAAGCAGGGACTACTCGTGAG-----------------------------------ATC 228 consensus_9828#2 TCAAGCAGGGACTACTCGTGAG-----------------------------------ATC 210 consensus_9828#1 TCAAGCAGGGACTACTCGTGAGGTTTGTTGTGATAACCACCCATAAAGTGGTTGTAGATC 300 ********************** *** consensus_9828#0 GCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGA 288 consensus_9828#2 GCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGA 270 consensus_9828#1 GCTACAACAACAACCATTAGTGAAGCTCTCCTAAAGCTCGATACCAAAGCTGCTCTAAGA 360 ************************************************************ consensus_9828#0 GATATAAGAAGATTTGATTATATATGCAAA-----------------------------A 319 consensus_9828#2 GATATAAGAAGATTTGATTATATATGCAAAGTACTTTTCTCATCGTTTTCATGTTTTAGA 330 consensus_9828#1 GATATAAGAAGATTTGATTATATATGCAAA-----------------------------A 391 ****************************** * consensus_9828#0 TAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCT 379 consensus_9828#2 TAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCT 390 consensus_9828#1 TAATTGAGCTTCTTATTTCAGAACACTTTCACAGGTTAGCTGGAAGGTTACAGCTCTTCT 451 ************************************************************ consensus_9828#0 TAATTGAACTTCTAAAAGAGGTGCTCAAACAAG--------------------------- 412 consensus_9828#2 TAATTGAACTTCTAAAAGAGGTGCTCAAACAAG--------------------------- 423 consensus_9828#1 TAATTGAACTTCTAAAAGAGGTGCTCAAACAAGGTTTCCGTATTTTCTCATTCTTATATA 511 ********************************* consensus_9828#0 ------TCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAA 466 consensus_9828#2 ------TCCCAGC----------------------------------------------- 430 consensus_9828#1 TTTTAGTCCAAGCTAGTTGCAACCAGACAGAACGTTTTCGAAAGCTTTTGGATGCATTAA 571 *** *** consensus_9828#0 GAGAAAATCTAGAGAAAAATGAATATGATCATATTGGAAGTGCCTTACTTTGGCAGAATC 526 consensus_9828#2 ------------------------------------------------------------ consensus_9828#1 GAGAAAATCTAGAGAAAAATGAATATGATCATATTGGGAGTGCCTTACTTTGGCAGAATC 631 consensus_9828#0 ATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAA 586 consensus_9828#2 ------------------------------------------------------------ consensus_9828#1 ATAAAAAGGCCCTAGATGAGATGTATATTCGTATCGATGAATTTGATATAGAAAAAAAAA 691 consensus_9828#0 TCCAATCATTTACAACCTGTCCGCATTACAAGCTCAGGCCTTTGAGTGTACGTGAAAACT 646 consensus_9828#2 ------------------------------------------------------------ consensus_9828#1 TCCAATC----------------------------------------------------- 698 consensus_9828#0 CTTCAGAAGAAGGTGTAAAACTGGAAAGACTTCCATCTGAATGTTTAACTCATGTCCTGC 706 consensus_9828#2 ------------------------------------------------------------ consensus_9828#1 ------------------------------------------------------------ consensus_9828#0 GAACCTATGAGGAGATCCTCTAGNGTCGTCCGAN 740 consensus_9828#2 ---------------------------------- consensus_9828#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||