These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 767 fasta sequence [ACATTAATCTTGATAGTGGGTCACAGATATAGCACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAATGACTGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATGCACCTGATGGTTTTATGCGTCATGATGATCTAGTTGCTCAGCATACCAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCATATCAA-CCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAAAACCGTGTAAGATTTGTGTTGCAACGAGGATTGGGTCCAGATCAAAATGGAACGGTTGTTGAATGCCTTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATATTTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTGGAAGATTTTGTGATGGAGCAAGGGACTGTGATGATGGTTCAGATGAAGATCCTAAAATGT] [+] EMBL CD111703 [ACATTAATCTTGATAGTGGGTCACAGATATAGCACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAATGACTGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATGCACCTGATGGTTTTATGCGTCATGATGATCTAGTTGCTCAGCATACCAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCATATCAA CCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCCAGGATCAGTTTCGAAACTACACGTGTCAGTGACAACCGTGTAAGATT ] [+] EMBL CD163188 [ CAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCATATCAA CCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAAAGCCGTGTAAGATTTGTGTTGCAACGAGGATTGGGTCCAGATCAAAATGGAACGGTTGTTGAATGCCTTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATATTTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTGGAAGA ] [+] EMBL CD163381 [ CAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCATATCAA CCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAAAACCGTGTAAGATTTGTGTTGCAACGAGGATTGGGTCCAGATCAAAATGGAACGGTTGTTGAATGCCCTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATATTTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTTGAAGA ] [-] EMBL CD162214 [ TATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTAAAAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGCCCATATCAACCCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAAAACCGTGTAAGATTTGTGTTGCAAAGAGagg ] [+] EMBL CD121283 [ GGGTCCAGATCAAAATGGAACGGTTGTTGAATGCCTTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATATTTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTGGAAGATTTTGTGATGGAGCAAGGGACTGTGATGATGGTTCAGATGAAGATCCTAAAATGT] consensusID : consensus_9829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 667 fasta sequence [AGTTTCGTATGGTATCATAATGCCAAAGTTGTGCATCGTGAAGCATCATTACGTTTGACATCATTGTCATATCGTGATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACGTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGATATAAAACAAACACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAATGAATGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATACACCTGATGGTTTTATGCGTCATGATGATCTAG] [+] EMBL CD184893 [AGTTTCGTATGGTATCATAATGCCAAAGTTGTGCATCGTGAAGCATCATTACGTTTGACATCATTGTCATATCGTGATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACGTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGA ] [-] EMBL BE449143 [ TCGTATGGTATCATAATGCCAAA TTTTGCATC TGAAGCATCATTACGTTTGACATCATTGTCATATCGTGATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACCTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGG TTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCGTAGAACA ] [+] EMBL CD111021 [ ATCGTGATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACGTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTACTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGATATAAAACAAACACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAA ] [-] EMBL CD187554 [ GATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACGTACCGCTATGTCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGATATAAAACAAACACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACG ] [+] EMBL CD088210 [ ATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGATATAAAACAAACACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAATGAATGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATACACCTGATGGTTTTATGCGTCATGATGATCTAG] [+] EMBL CD181572 [ AGAAATCAATCCAAAATCGGACACAGTCGACGAGGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAACGAATGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATACACCTGATGGTTTTATGCGTCATGATG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9829#0 ACATTAATCTTGATAGTGGGTCACAGATATAGCACATTTAGTTGTTAGAGCTGAAGAAGG 60 consensus_9829#1 ------------------------------------------------AGTTTCGTATGG 12 ** * * ** consensus_9829#0 GTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTG 120 consensus_9829#1 TATCATAATG---CCAAAGTTGTGCA---TCGTGAAGCATCATTACGTTTGACATCATTG 66 * *** ***** * * ** *** * * * ** * ****** consensus_9829#0 TCGTGTACATGGAATGACTGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATT 180 consensus_9829#1 TCATAT-CGTGATATAGGTATGTATATA---TGTCGAGCTGAATGGACACCAAGATATTC 122 ** * * * ** ** * ***** *** * ****** *** * consensus_9829#0 TTATAGTTCAACACGTGTACGTCTTGATGTTGA--TGCACCTGATGGTTTTATGCGTCAT 238 consensus_9829#1 ACGTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAAC 182 ** * * * * * * *** * ** * * * * * consensus_9829#0 GATGATCTAGTTGCTCAGCATACCAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGAT 298 consensus_9829#1 GAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGC-----CTGGAGAA 237 ** ** * ** *** * ** * * * * ** ** ** consensus_9829#0 CAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTT 358 consensus_9829#1 ACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTT 297 * ***** * *** *** ** *** * * *** * **** consensus_9829#0 GTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCA 418 consensus_9829#1 GAAAATCAACTATTGGAGAATCATCCAACTATAA-ATGCTACAGGCAAA--GTTT-ATCG 353 * * * ** ** ** ** * * * ** * *** * * consensus_9829#0 TATCAACCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTT 478 consensus_9829#1 TATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGG 413 **** * * * ** * * * ** * ** ** ** * * * consensus_9829#0 ACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAA 538 consensus_9829#1 AACATACGAGTGCAGA--ATCGGTCGTGATATAAAAC----AAACACATTTAGTTGTTAG 467 * **** * ** * * * ** * ** *** * ** * consensus_9829#0 AACCGTGTAAGATTTGTGTTGCAA-CGAGGATTGGGTCCAGATCAAAATGGAACGGTTGT 597 consensus_9829#1 AGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGT 527 * * * *** ** *** * * ** ** *** * * ** * ** consensus_9829#0 TGAATGCCTTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATAT 657 consensus_9829#1 GGAATTTCATTGTCGTGTAC---ATGGAATG--AATGGTAATATAAATCGTCAATTAGAA 582 **** * ** ** ** * ** * * * **** * ** * * * consensus_9829#0 TTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTGGAAGATTTTG 717 consensus_9829#1 TGGTATT-ATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATACACCT-- 639 * ** ** * ** * ** * ** * * * ** * * * consensus_9829#0 TGATGGAGCAAGGGACTGTGATGATGGTTCAGATGAAGATCCTAAAATGT 767 consensus_9829#1 -GATGGTTTTATG---CGTCATGATGATCTAG------------------ 667 ***** * * ** ****** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||