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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 767 fasta sequence
[ACATTAATCTTGATAGTGGGTCACAGATATAGCACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAATGACTGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATGCACCTGATGGTTTTATGCGTCATGATGATCTAGTTGCTCAGCATACCAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCATATCAA-CCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAAAACCGTGTAAGATTTGTGTTGCAACGAGGATTGGGTCCAGATCAAAATGGAACGGTTGTTGAATGCCTTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATATTTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTGGAAGATTTTGTGATGGAGCAAGGGACTGTGATGATGGTTCAGATGAAGATCCTAAAATGT]
[+] EMBL CD111703 [ACATTAATCTTGATAGTGGGTCACAGATATAGCACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAATGACTGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATGCACCTGATGGTTTTATGCGTCATGATGATCTAGTTGCTCAGCATACCAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCATATCAA CCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCCAGGATCAGTTTCGAAACTACACGTGTCAGTGACAACCGTGTAAGATT ]
[+] EMBL CD163188 [ CAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCATATCAA CCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAAAGCCGTGTAAGATTTGTGTTGCAACGAGGATTGGGTCCAGATCAAAATGGAACGGTTGTTGAATGCCTTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATATTTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTGGAAGA ]
[+] EMBL CD163381 [ CAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCATATCAA CCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAAAACCGTGTAAGATTTGTGTTGCAACGAGGATTGGGTCCAGATCAAAATGGAACGGTTGTTGAATGCCCTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATATTTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTTGAAGA ]
[-] EMBL CD162214 [ TATTAGTAAAGCCAGAGCACGTGTTGCTGATCAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTTGTTAGAGCAGTAAAAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGCCCATATCAACCCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTTACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAAAACCGTGTAAGATTTGTGTTGCAAAGAGagg ]
[+] EMBL CD121283 [ GGGTCCAGATCAAAATGGAACGGTTGTTGAATGCCTTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATATTTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTGGAAGATTTTGTGATGGAGCAAGGGACTGTGATGATGGTTCAGATGAAGATCCTAAAATGT]
consensusID : consensus_9829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 667 fasta sequence
[AGTTTCGTATGGTATCATAATGCCAAAGTTGTGCATCGTGAAGCATCATTACGTTTGACATCATTGTCATATCGTGATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACGTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGATATAAAACAAACACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAATGAATGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATACACCTGATGGTTTTATGCGTCATGATGATCTAG]
[+] EMBL CD184893 [AGTTTCGTATGGTATCATAATGCCAAAGTTGTGCATCGTGAAGCATCATTACGTTTGACATCATTGTCATATCGTGATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACGTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGA ]
[-] EMBL BE449143 [ TCGTATGGTATCATAATGCCAAA TTTTGCATC TGAAGCATCATTACGTTTGACATCATTGTCATATCGTGATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACCTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGG TTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCGTAGAACA ]
[+] EMBL CD111021 [ ATCGTGATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACGTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTACTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGATATAAAACAAACACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAA ]
[-] EMBL CD187554 [ GATATAGGTATGTATATATGTCGAGCTGAATGGACACCAAGATATTCACGTACCGCTATGTCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAACGAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGCCTGGAGAAACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTTGAAAATCAACTATTGGAGAATCATCCAACTATAAATGCTACAGGCAAAGTTTATCGTATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGATATAAAACAAACACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACG ]
[+] EMBL CD088210 [ ATCATGGGGGAACATACGAGTGCAGAATCGGTCGTGATATAAAACAAACACATTTAGTTGTTAGAGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAATGAATGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATACACCTGATGGTTTTATGCGTCATGATGATCTAG]
[+] EMBL CD181572 [ AGAAATCAATCCAAAATCGGACACAGTCGACGAGGGTGAAGCAGTGGAATTTCATTGTCGTGTACATGGAACGAATGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATACACCTGATGGTTTTATGCGTCATGATG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9829#0 ACATTAATCTTGATAGTGGGTCACAGATATAGCACATTTAGTTGTTAGAGCTGAAGAAGG 60
consensus_9829#1 ------------------------------------------------AGTTTCGTATGG 12
** * * **
consensus_9829#0 GTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGTGGAATTTCATTG 120
consensus_9829#1 TATCATAATG---CCAAAGTTGTGCA---TCGTGAAGCATCATTACGTTTGACATCATTG 66
* *** ***** * * ** *** * * * ** * ******
consensus_9829#0 TCGTGTACATGGAATGACTGGTAATATAAATCGTCAATTAGAATGGTATTATAGACCATT 180
consensus_9829#1 TCATAT-CGTGATATAGGTATGTATATA---TGTCGAGCTGAATGGACACCAAGATATTC 122
** * * * ** ** * ***** *** * ****** *** *
consensus_9829#0 TTATAGTTCAACACGTGTACGTCTTGATGTTGA--TGCACCTGATGGTTTTATGCGTCAT 238
consensus_9829#1 ACGTACCGCTATATCAGCTAATGCAACAGCTGAATTAAGTTTGGCATTGACACGAGAAAC 182
** * * * * * * *** * ** * * * * *
consensus_9829#0 GATGATCTAGTTGCTCAGCATACCAGTTTTATTAGTAAAGCCAGAGCACGTGTTGCTGAT 298
consensus_9829#1 GAAAATTGAAATGAGTCCTCCACCTGGTTCAGTTATGGTTTCTTTGC-----CTGGAGAA 237
** ** * ** *** * ** * * * * ** ** **
consensus_9829#0 CAAGGTGAATATATTTGTAGATTACCATCTCAAAATGAAGAAATTGTCGGAAAACTTTTT 358
consensus_9829#1 ACACGTGAACTTCACTGTGAATTTCCTGTAGCTAATCCAAGAGATGTTAGGTGGTATTTT 297
* ***** * *** *** ** *** * * *** * ****
consensus_9829#0 GTTAGAGCAGTACGAAGTTATGTATTGACAATCACACCTCAGAGATTGACCGTTCGACCA 418
consensus_9829#1 GAAAATCAACTATTGGAGAATCATCCAACTATAA-ATGCTACAGGCAAA--GTTT-ATCG 353
* * * ** ** ** ** * * * ** * *** * *
consensus_9829#0 TATCAACCAGTAGAGTTTGAATGTTTCGCTGCATCCGAAGATGGACAACCGGCTTCATTT 478
consensus_9829#1 TATCGATCGTTTAAGAGTAAGTATTGTGACAATTCGTGGCATAGAACAAGATCATGGGGG 413
**** * * * ** * * * ** * ** ** ** * * *
consensus_9829#0 ACTCCACGATTTCAAGTCAGAGATTCAAGGATCAGTTTCGAAACTACACGTGTCAGTGAA 538
consensus_9829#1 AACATACGAGTGCAGA--ATCGGTCGTGATATAAAAC----AAACACATTTAGTTGTTAG 467
* **** * ** * * * ** * ** *** * ** *
consensus_9829#0 AACCGTGTAAGATTTGTGTTGCAA-CGAGGATTGGGTCCAGATCAAAATGGAACGGTTGT 597
consensus_9829#1 AGCTGAAGAAGGGTTAGAAATCAATCCAAAATCGGACACAGTCGACGAAGGTGAAGCAGT 527
* * * *** ** *** * * ** ** *** * * ** * **
consensus_9829#0 TGAATGCCTTTCAGATGAACCAAGTAGACCGGCATCAGCAATAATTACAGTTGAAGATAT 657
consensus_9829#1 GGAATTTCATTGTCGTGTAC---ATGGAATG--AATGGTAATATAAATCGTCAATTAGAA 582
**** * ** ** ** * ** * * * **** * ** * * *
consensus_9829#0 TTGTCCAGATGGTTCACGTCGCTGTCGTTCTGGTCAGTGCTTACCAGCTGGAAGATTTTG 717
consensus_9829#1 TGGTATT-ATAGACCATTTTATAGTTCAACACGTGTACGTCTTGATGTTGATACACCT-- 639
* ** ** * ** * ** * ** * * * ** * * *
consensus_9829#0 TGATGGAGCAAGGGACTGTGATGATGGTTCAGATGAAGATCCTAAAATGT 767
consensus_9829#1 -GATGGTTTTATG---CGTCATGATGATCTAG------------------ 667
***** * * ** ****** * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||