cluster # 9830

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Schistosoma mansoni
cluster # 9830 cluster # 9830 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9830#0 length = 1597 sequences # 5
consensus_9830#1 length = 735 sequences # 1

consensus_9830#2 length = 566 sequences # 3
consensus_9830#3 length = 480 sequences # 1
consensus_9830#4 length = 200 sequences # 1

consensusID : consensus_9830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1597
fasta sequence

                              [GGTCGAGTAACCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAACATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTGCAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTTTAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTGAGTTCAATGATATATGTATTCTCTCACTGGACAGTGAAGCAAGTTTCTCCGGTTTACTTTATTGCCAATATCTTATACAGTTTTCGTTTGCATGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTT-AAATANAAGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTTTACTGTGGACTTTATTAAAACTCAGTTTGATAATCCGAAAATCAATGCTATTGTTGTGACTAAAGGCTCAATAGAAGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGATCAACAAGCGTTACATCCTCATAAATTATCTGATGATGATGATGATGAAGAAGAAGAAGAAGAAGATTCGGAATCAATGCAACAGAGACCATTTAGAACACCAAGA-GCAAAAGAT-CCTTATGCTTCTATCGACTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATTTCTA-CCAATTCTCTTTTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTTTCTCTTAATATTACTGATGTTCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACATCTTTTGTAACGTATATGCACTTGCTTTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTCTATGGACTGTACATTGTTTGAAAAAATTCACATATCATTAGTGTCACTGTATAATAGAATCGTTATTCTTTAGTGTTTTTTAAATGTGTGATTTTTCAGATAGGTTAATTGCTTATTTGTTTTGTTTGCTGTTTTAGACATTAAAATTAATAAAGAGGGTTATAAGTACTTAATGGATACTTAGGGGTTAGTAGNTAGTGTAATCTTTCTATANGGGATCACTNNTCACATANNNACCATATCATATTAAACATACTGGGTAACGTATCTAANTCTCTATATTGGTGGGNTGATTATATGAGTGATTTATTCAACTTGAACAATATCAGTGAACTGGTATATTACTCAGTATCAGTAAATATTCATCCGATTATATTTCAGGGTTTTAAAAGGTGGTATGCGATAATTAGGATCTGGCCATATCATCTTGGNAGTTTGTCGATGATGTAAAAAATTATATCAGTAT]

[+] EMBL CD122624             [GGTCGAGTAACCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAACATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTGCAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD078834             [   CGAGTAATCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAACATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTGCAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTTTAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTGAGTTCAATGATATATGTATTCTCTCACTGGACAGTGAAGCAAGTTTCTCCGGTTTACTTTATTGCCAATATCTTATACAGTTTTCGTTTGCATGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTT AAATANAAGATGGAGTCATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD073294             [                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGTGAAGCAAGTTTCTCCGGTTTACTTTATTGCCAATATCTTATACAGTTTTCGTTTGCATGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAAATAAAAGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTTTACTGTGGACTTTATTAAAACTCAGTTTGATAATCCGAAAATCAATGCTATTGTTGTGACTAAAGGCTCAATAGAAGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGATCAACAAGCGTTACATCCTCATAAATTATCTGATGATGATGATGATGAAGAAGAAGAAGAAGAAGATTCGGAATCAATGCAACAGAGACCATTTAGAACACCAAGA GCAAAAGAT CCTTATGCTTCTATCGACTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATTTCTA CCAATTCTCTTTTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD081828             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GATAATCCG AAATCAATGCTATTGTTGTGACTAAAGGCTCAATAGAAGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGATCAACAAGCGTTACATCCTCATAAATTATCTGATGATGATGATGATGAAGAAGAAGAAGAAGAAGATTCGGAATCAATGCAACAGAGACCATTTAGAACACCAAGA GCAAAAGAT CCTTATGCTTCTATCGACTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATTTCTA CCAATTCTCTTTTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTTTCTCTTAATATTACTGATGTTCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACATCTTTTGTAACGTATATGCACTTGCTTTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTCTATGGACTGTACATTGTTTGAAAAAATTCACATATCATTAGTGTCACTGTATAATAGAATCGTTATTCTTTAGTGTTTTTTAAATGTGTGATTTTTCAGATAGGTTAATTGCTTATTTGTTTTGTTTGCTGTTTTAGACATTAAAATTAATAAAGAGGGTTATAAGTACTTAATGGATACTTAGGGGTTAGTAGNTAGTGTAATCTTTCTATANGGGATCACTNNTCACATANNNACCATATCATATTAAACATACTGGGTAACGTATCTAANTCTCTATATTGGTGGGNTGATTATATGAGTGATTTATTCAACTTGAACAATATCAGTGAACTGGTATATTACTCAGTATCAGTAAATATTCATCCGATTATATTTCAGGGTTTTAAAAGGTGGTATGCGATAATTAGGATCTGGCCATATCATCTTGGNAGTTTGTCGATGATGTAAAAAATTATATCAGTAT]
[-] EMBL AI026211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAAGAAGAAGAAGAAGAAGATTCGGAATCAATGCAACAGAGNCCATTTAGAACACCNAGAGGCAAAAGATCCCTTATGCTTCTATCGACTATTCC ATTTAATTTTACCTATTATAGTATCGTTTGGAGCATTTCTACCCAATTCTCTTTTGTTTATGTAAACTTTGGAGGAAAATACAATAAATAGTTTCTCTTAATATTACTGATGTTCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACATCTTTTGTAACGTATATGCACTTGCTTTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTCTATGGACTGTACATTGTTTGAAAAAATTCACATATCATTAGTGTCACTGTATAATAGAATCGTTATTCTTTA                                                                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_9830#0
GGTCGAGTAACCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAACATTGAA
TCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTC
ATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAG
TCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTG
CAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACG
AAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTTTAAAAT
TTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTGAGTTCAATGATATATGTATTCT
CTCACTGGACAGTGAAGCAAGTTTCTCCGGTTTACTTTATTGCCAATATCTTATACAGTT
TTCGTTTGCATGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGG
ATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAATANA
AGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTTTACTGT
GGACTTTATTAAAACTCAGTTTGATAATCCGAAAATCAATGCTATTGTTGTGACTAAAGG
CTCAATAGAAGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGATCAACA
AGCGTTACATCCTCATAAATTATCTGATGATGATGATGATGAAGAAGAAGAAGAAGAAGA
TTCGGAATCAATGCAACAGAGACCATTTAGAACACCAAGAGCAAAAGATCCTTATGCTTC
TATCGACTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATTTCTACCAAT
TCTCTTTTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTTTCTCTTAATATTAC
TGATGTTCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACATCTTTTGTAA
CGTATATGCACTTGCTTTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTCTATGGACTG
TACATTGTTTGAAAAAATTCACATATCATTAGTGTCACTGTATAATAGAATCGTTATTCT
TTAGTGTTTTTTAAATGTGTGATTTTTCAGATAGGTTAATTGCTTATTTGTTTTGTTTGC
TGTTTTAGACATTAAAATTAATAAAGAGGGTTATAAGTACTTAATGGATACTTAGGGGTT
AGTAGNTAGTGTAATCTTTCTATANGGGATCACTNNTCACATANNNACCATATCATATTA
AACATACTGGGTAACGTATCTAANTCTCTATATTGGTGGGNTGATTATATGAGTGATTTA
TTCAACTTGAACAATATCAGTGAACTGGTATATTACTCAGTATCAGTAAATATTCATCCG
ATTATATTTCAGGGTTTTAAAAGGTGGTATGCGATAATTAGGATCTGGCCATATCATCTT
GGNAGTTTGTCGATGATGTAAAAAATTATATCAGTAT

consensusID : consensus_9830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence

                              [GGGCCAGAATTCGGCACGAGGAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAAATAAAAGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTTTACTGTGGACTTTATTAAAACTCAGTTTGATAATCCGAAAATCAATGCTATTGTTGTGACTAAAGGCTCAATAGAAGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGATCAACAAGCGTTACATCCTCATAAATTATCTGATGATGATGATGATGATGAAGAAGAAGAAGAAGAAGATTCGGAATCAATGCAACAGAGACCATTTAGAACACCAAGAGCAAAAGATCCTTATGCTTCTATCGACTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATTTCTACCAATTCTCTTTTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTTTCTCTTAATATTACTGATGTTCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACATCTTTTGTAACGTATATGCACTTGCTNTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTCTATGGACTGTACATTGTTTGAAAAAATCAC]

[+] EMBL CD079954             [GGGCCAGAATTCGGCACGAGGAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAAATAAAAGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTTTACTGTGGACTTTATTAAAACTCAGTTTGATAATCCGAAAATCAATGCTATTGTTGTGACTAAAGGCTCAATAGAAGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGATCAACAAGCGTTACATCCTCATAAATTATCTGATGATGATGATGATGATGAAGAAGAAGAAGAAGAAGATTCGGAATCAATGCAACAGAGACCATTTAGAACACCAAGAGCAAAAGATCCTTATGCTTCTATCGACTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATTTCTACCAATTCTCTTTTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTTTCTCTTAATATTACTGATGTTCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACATCTTTTGTAACGTATATGCACTTGCTNTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTCTATGGACTGTACATTGTTTGAAAAAATCAC]




>consensus_9830#1
GGGCCAGAATTCGGCACGAGGAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAA
AGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGG
TCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAAATAAAAGATGGAGT
CATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTTTACTGTGGACTTTAT
TAAAACTCAGTTTGATAATCCGAAAATCAATGCTATTGTTGTGACTAAAGGCTCAATAGA
AGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGATCAACAAGCGTTACA
TCCTCATAAATTATCTGATGATGATGATGATGATGAAGAAGAAGAAGAAGAAGATTCGGA
ATCAATGCAACAGAGACCATTTAGAACACCAAGAGCAAAAGATCCTTATGCTTCTATCGA
CTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATTTCTACCAATTCTCTT
TTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTTTCTCTTAATATTACTGATGT
TCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACATCTTTTGTAACGTATA
TGCACTTGCTNTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTCTATGGACTGTACATT
GTTTGAAAAAATCAC

consensusID : consensus_9830#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 566
fasta sequence

                              [GTTGAAGGTCGAGTAATCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAACATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTGCAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTTTAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAAATAAAAGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTNT]

[+] EMBL CD084308             [GTTGAAGGTCGAGTAATCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAACATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTGCAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTTTAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTGCAT                                                                                   ]
[+] EMBL AI976098             [                               AGGTGTACACTTAGTATTTTATTGAAAACATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTGCAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTTTAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTATTCAATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAAATAAAAGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTNT]
[+] EMBL AI976316             [                               AGGTGTACACTTAGTATTTTATTGAAAACATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGCTAATTGTGGAGGCCCTAAACACATTGATTCACATGGAGTCCAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTGCAATAAATCTGGTGGCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTTTAAAACTATCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGAATTCAATGGTCATATTCAAAATTCACTCCCACTTGT                                                                                                                               ]




>consensus_9830#2
GTTGAAGGTCGAGTAATCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAAC
ATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACT
ATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCAC
ATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCT
CGTTTGCAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATC
ATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTT
TAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTATTCAATGTTCATATTC
AAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGGCTTTGCTACTG
CATTCGATTTAAATGTGCCGCTTAAAATAAAAGATGGAGTCATATATATTAAAGAAAATA
CAGTCACTATCGATGACGATCATTNT

consensusID : consensus_9830#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [AAATTCACATATCATTAGTGTCACTGTATAATAGAATCGTTATTCTTTAGTGTTTTTTAAAGGTGTGATTTTTCAGATAGGTTAATTGCTTATTTGTTTTGTTTGCGGTTTTAGACATTAAAATTAATAAAGAGGGTTATAAGTACTTAATGGATACTTAGGGTTAAGTAGTAAGTGTAATCTTTCTATAAGGATTCACTTTCACAATAAACCAATAATCATATTAACAATAACTGTAAACGTAATCTAATTCTTCTATATTGTTGGTTGTATTATATGAGTGATTTATTTCAACTTTGAACAAATTATCAGTGAAACTGTTATTATTACTTCAGTATCCAGTAAAATAATTCATCCGGTATTATATTTCAGGGTTTTTAAAATGTTTGGTATTGCGATTATTAGTGATCTTGCCCATTATTCATTCTTTGTAGGTTATGTACGAATGATGTAAAAAAAATTTATTATCAGTAAATCTCC]

[-] EMBL CD075550             [AAATTCACATATCATTAGTGTCACTGTATAATAGAATCGTTATTCTTTAGTGTTTTTTAAAGGTGTGATTTTTCAGATAGGTTAATTGCTTATTTGTTTTGTTTGCGGTTTTAGACATTAAAATTAATAAAGAGGGTTATAAGTACTTAATGGATACTTAGGGTTAAGTAGTAAGTGTAATCTTTCTATAAGGATTCACTTTCACAATAAACCAATAATCATATTAACAATAACTGTAAACGTAATCTAATTCTTCTATATTGTTGGTTGTATTATATGAGTGATTTATTTCAACTTTGAACAAATTATCAGTGAAACTGTTATTATTACTTCAGTATCCAGTAAAATAATTCATCCGGTATTATATTTCAGGGTTTTTAAAATGTTTGGTATTGCGATTATTAGTGATCTTGCCCATTATTCATTCTTTGTAGGTTATGTACGAATGATGTAAAAAAAATTTATTATCAGTAAATCTCC]




>consensus_9830#3
AAATTCACATATCATTAGTGTCACTGTATAATAGAATCGTTATTCTTTAGTGTTTTTTAA
AGGTGTGATTTTTCAGATAGGTTAATTGCTTATTTGTTTTGTTTGCGGTTTTAGACATTA
AAATTAATAAAGAGGGTTATAAGTACTTAATGGATACTTAGGGTTAAGTAGTAAGTGTAA
TCTTTCTATAAGGATTCACTTTCACAATAAACCAATAATCATATTAACAATAACTGTAAA
CGTAATCTAATTCTTCTATATTGTTGGTTGTATTATATGAGTGATTTATTTCAACTTTGA
ACAAATTATCAGTGAAACTGTTATTATTACTTCAGTATCCAGTAAAATAATTCATCCGGT
ATTATATTTCAGGGTTTTTAAAATGTTTGGTATTGCGATTATTAGTGATCTTGCCCATTA
TTCATTCTTTGTAGGTTATGTACGAATGATGTAAAAAAAATTTATTATCAGTAAATCTCC

consensusID : consensus_9830#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence

                              [CTCGCGGCCAAAAATTCGGCACGAGGATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACG]

[+] EMBL CD077977             [CTCGCGGCCAAAAATTCGGCACGAGGATTGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACG]




>consensus_9830#4
CTCGCGGCCAAAAATTCGGCACGAGGATTGAATCGATCTTCCTAAGCCCATGTTTGTAAT
ATTCTTCCATCTCCTATTTCTTGACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTG
TGGTGGCCCTAAACACATTGATTCACATGGAGTCGAATATAAGGCTGATTTCTTAGACAT
GGGTACTGCATCGGACTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      GGTCGAGTAACCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAACATTGAA 60
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      TCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCTATTTCTTGACTATGTTC 120
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      ATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATTCACATGGAG 180
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      TCGAATATAAGGCTGATTTCTTAGACATGGGTACTGCATCGGACTACGGCCGCTCGTTTG 240
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      CAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAACTGAACGGTATCATAACG 300
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      AAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTACATTCTTACTTTAAAAT 360
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      TTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTGAGTTCAATGATATATGTATTCT 420
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      -GTTGAAGGTCGAGTAATCATTTTGCCTGTAGAGGTGTACACTTAGTATTTTATTGAAAA 59
consensus_9830#4      -----------------------------------CTCGCGGCCAAAAATTCGGCACGAG 25
consensus_9830#1      -------GGGCCAGAATTCGGCACGAGGAAAATTTTCTGAGGTT--TGGTTTACTGAGCG 51
consensus_9830#0      CTCACTGGACAGTGAAGCAAGTTTCTCCGGTTTACTTTATTGCCAATATCTTATACAGTT 480
consensus_9830#3      ----------------------------------------------AAATTCACATATCA 14
                                                                        *         

consensus_9830#2      CAT-TGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCT-ATTTCTTG 117
consensus_9830#4      GAT-TGAATCGATCTTCCTAAGCCCATGTTTGTAATATTCTTCCATCTCCT-ATTTCTTG 83
consensus_9830#1      TTA-TCAAAAAGTATTCA-ATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTG 109
consensus_9830#0      TTCGTTTGCATGTATTCA-ATGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTG 539
consensus_9830#3      TTAGTGTCACTGTATAAT-------AGAATCGTTATTCTTTAGTGTTTTTTAAAGGTGTG 67
                          *       * *          *   *    **    *      *  * *     **

consensus_9830#2      ACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATT 177
consensus_9830#4      ACTATGTTCATGGGGAAGTAGTATGGGCCGTTAATTGTGGTGGCCCTAAACACATTGATT 143
consensus_9830#1      G--ATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAAA 167
consensus_9830#0      G--ATATTTTTGGTCAAGTTGGCTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAA- 596
consensus_9830#3      A----TTTTTCAGATAGGTTAATTGCTTATTTGTTTTGTTTGCGGTTTTAGACATTAAAA 123
                            **    *  * **    *       *   *    *     *       ** *  

consensus_9830#2      CACA---TGGAGTCGAATATA---AGGCTGATTTCTTAGACATGGGTACTG--CATCGGA 229
consensus_9830#4      CACA---TGGAGTCGAATATA---AGGCTGATTTCTTAGACATGGGTACTG--CATCGGA 195
consensus_9830#1      TAAAAGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTTTA 227
consensus_9830#0      TANAAGATGGAGTCATATATATTAAAGAAAATACAGTCACTATCGATGACGATCATTTTA 656
consensus_9830#3      TTAA---TAAAGAGGGTTATA------AGTACTTAATGGATACTTAGGGTTAAGTAGTAA 174
                         *   *  **     ****         *     *    *                 *

consensus_9830#2      CTACGGCCGCTCGTTTGCAATAAATCGTGTTCCCTCAGCAGATCATATAATTTATCAAAC 289
consensus_9830#4      CTACG------------------------------------------------------- 200
consensus_9830#1      CTGTGG--ACTTTATTAAAACTCAGTTTGATAATCCGAAAATCAATGCTATTGTTGTGAC 285
consensus_9830#0      CTGTGG--ACTTTATTAAAACTCAGTTTGATAATCCGAAAATCAATGCTATTGTTGTGAC 714
consensus_9830#3      GTGTAATCTTTCTATAAGGATTCACTTTCACAAT----AAACCAATAATCATATTAACAA 230
                       *                                                          

consensus_9830#2      TGAACGGTATCATAACGAAGACTTTTCTTATCCTATTCCAATAACATCTGATGGAGAGTA 349
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      TAAAGGCTCAATAGAAGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGA 345
consensus_9830#0      TAAAGGCTCAATAGAAGATGTCCCTCAATTACCACCGTTAGAAAAAGTAGAAACATTTGA 774
consensus_9830#3      TAACTGTAAACGTAATCTAATTCTTCTATATTGTTGGTTGTATTATATGAGTGATTTATT 290
                                                                                  

consensus_9830#2      CATTCTTACTTTAAAATTTTCTGAGGTTTGGTTTACTGAGCGTTATCAAAAAGTATTCAA 409
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      TCAACAAGCGTTACATCCTCATAAATTATCTGATGATGATGATGATGATGAAGAAGAAGA 405
consensus_9830#0      TCAACAAGCGTTACATCCTCATAAATTATC---TGATGATGATGATGATGAAGAAGAAGA 831
consensus_9830#3      TCAACTTTGAACAAATTATCAGTGAA--------ACTGTTATTATTACTTCAGTATCCAG 342
                                                                                  

consensus_9830#2      TGTTCATATTCAAAATTCACTCCCACTTGTTCAAAACTTGGATATTTTTGGTCAAGTTGG 469
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      AGAAGAAGATTCGGAATCAATGCAACAGAGACCATTTAGAACACCAAGAGCAAAAGATCC 465
consensus_9830#0      AGAAGAAGATTCGGAATCAATGCAACAGAGACCATTTAGAACACCAAGAGCAAAAGATCC 891
consensus_9830#3      TAAAATAATTCATCCGGTATTATATTTCAGGGTTTTTAAAATGTTTGGTATTGCGATTAT 402
                                                                                  

consensus_9830#2      CTTTGCTACTGCATTCGATTTAAATGTGCCGCTTAAAATAAAAGATGGAGTCATATATAT 529
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      TTATGCTTCTATCGACTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATT 525
consensus_9830#0      TTATGCTTCTATCGACTATTCCTATTTAATTTTACCTATTATAGTATCGTTTGGAGCATT 951
consensus_9830#3      TAGTGATCTTGCCCATTATTCATTCTTTGTAGGTTATGTACGAATGATGTAAAAAAAATT 462
                                                                                  

consensus_9830#2      TAAAGAAAATACAGTCACTATCGATGACGATCATTNT----------------------- 566
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      TCTACCAATTCTCTTTTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTTTCTCT 585
consensus_9830#0      TCTACCAATTCTCTTTTGTTTATGTAAACTTTGAAGAAAAATACAATAAATAGTTTCTCT 1011
consensus_9830#3      TATTATCAGTAAATCTCC------------------------------------------ 480
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      TAATATTACTGATGTTCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACAT 645
consensus_9830#0      TAATATTACTGATGTTCTTATTGTTGTTGTTTTTGTGTAATTTCTTTTAATTATTCACAT 1071
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      CTTTTGTAACGTATATGCACTTGCTNTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTC 705
consensus_9830#0      CTTTTGTAACGTATATGCACTTGCTTTATTTTGTCTTTCTCGAAGCTAAAATTTTCATTC 1131
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      TATGGACTGTACATTGTTTGAAAAAATCAC------------------------------ 735
consensus_9830#0      TATGGACTGTACATTGTTTGAAAAAATTCACATATCATTAGTGTCACTGTATAATAGAAT 1191
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      CGTTATTCTTTAGTGTTTTTTAAATGTGTGATTTTTCAGATAGGTTAATTGCTTATTTGT 1251
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      TTTGTTTGCTGTTTTAGACATTAAAATTAATAAAGAGGGTTATAAGTACTTAATGGATAC 1311
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      TTAGGGGTTAGTAGNTAGTGTAATCTTTCTATANGGGATCACTNNTCACATANNNACCAT 1371
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      ATCATATTAAACATACTGGGTAACGTATCTAANTCTCTATATTGGTGGGNTGATTATATG 1431
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      AGTGATTTATTCAACTTGAACAATATCAGTGAACTGGTATATTACTCAGTATCAGTAAAT 1491
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ------------------------------------------------------------
consensus_9830#4      ------------------------------------------------------------
consensus_9830#1      ------------------------------------------------------------
consensus_9830#0      ATTCATCCGATTATATTTCAGGGTTTTAAAAGGTGGTATGCGATAATTAGGATCTGGCCA 1551
consensus_9830#3      ------------------------------------------------------------
                                                                                  

consensus_9830#2      ----------------------------------------------
consensus_9830#4      ----------------------------------------------
consensus_9830#1      ----------------------------------------------
consensus_9830#0      TATCATCTTGGNAGTTTGTCGATGATGTAAAAAATTATATCAGTAT 1597
consensus_9830#3      ----------------------------------------------