cluster # 9831

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Schistosoma mansoni
cluster # 9831 cluster # 9831 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9831#0 length = 606 sequences # 8
consensus_9831#1 length = 482 sequences # 1

consensus_9831#2 length = 443 sequences # 1
consensus_9831#3 length = 298 sequences # 1

consensusID : consensus_9831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 606
fasta sequence

                              [ATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACAAAAACAAGGATGGTGAACTAGATTATGATGAGTTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATC-TGTC-TGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAAAATATT]

[+] EMBL SMCBP                [ATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACAAAAACAAGGATGGTGAACTAGATTATGATGAGTTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATC TGTC TGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAAAATAT ]
[+] EMBL AW497743             [ TACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGA AAAATAATCAAGGAAACTGATATGTATAGTGATGG AAAATTTCC TAGAAGAGTATATGTATGCCCTCAAAAAAC CCCCCCTCGTG                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD152471             [                                        GACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTTTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACC                                                                                                                                                                                                                                                                 ]
[+] EMBL BE505105             [                                                                   AGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAG CAAAATAATCAAGGNAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGG AAAGTTTCTATCAAAGAATTGGNTGNATTTCTAAAAACCTCCGGGATGGNTATAGACCAAAATAGNTTACGNAATTGGGTGNCACAAAATNNCAAAA                                                                                                                                                                                                                          ]
[-] EMBL CD119472             [                                                                                                                                                         TCAAGGGAACTGATATGAATAGTGATGGGAAAAATTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTC                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AW497858             [                                                                                                                                                                                                                                                                                                                                                                                                                               TGAGTTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATC TGTC TGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAA       ]
[+] EMBL AW063011             [                                                                                                                                                                                                                                                                                                                                                                                                                             agadAGTTCTTAGCATATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATCATGTCATGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAAAATATT]
[+] EMBL AI764810             [                                                                                                                                                                                                                                                                                                                                                                                                                                 AGTTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATC TGTC TGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAAAATATT]




>consensus_9831#0
ATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAA
TAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAG
TTGGTGTTTGTCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATAGTGATG
GAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGT
GTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTT
CTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTT
TACGTAATTGGATGACACAAAATGACAAAAACAAGGATGGTGAACTAGATTATGATGAGT
TCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTC
AGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCA
TTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAA
AATATT

consensusID : consensus_9831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [AATATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGAGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGGATGACACAAAATGACAAAAACAAGGGTGGTGAACTAGATTATGATGAGTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGGTCAGATGATTTTT]

[+] EMBL AI740307             [AATATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGAGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGGATGACACAAAATGACAAAAACAAGGGTGGTGAACTAGATTATGATGAGTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGGTCAGATGATTTTT]




>consensus_9831#1
AATATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACG
CAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAG
AAGTTGGTGTTTGTCCAAATGTCGCAGAGAAACTGATATGAATAGTGATGGAAAAATTTC
CTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACG
ATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGA
ATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTG
GGATGACACAAAATGACAAAAACAAGGGTGGTGAACTAGATTATGATGAGTCTTAGCCTA
TGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGGTCAGATGATTT
TT

consensusID : consensus_9831#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [AAAGCCNAAGCCCAANATGGGTTTCCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTTGTCCCAAATGTCGCAGACTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCCTATCCAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACCAAAAACAAGGATGGTGAACTAGATTATGATGAGTTCCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCCAAATAATAATTTNCTA]

[-] EMBL SM513                [AAAGCCNAAGCCCAANATGGGTTTCCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTTGTCCCAAATGTCGCAGACTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCCTATCCAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACCAAAAACAAGGATGGTGAACTAGATTATGATGAGTTCCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCCAAATAATAATTTNCTA]




>consensus_9831#2
AAAGCCNAAGCCCAANATGGGTTTCCTTACACGTGAAGAAATCGCACAATGCTTAAAAGA
AGTTGGTGTTTTGTCCCAAATGTCGCAGACTGTTGCACGATGGAGAGAAGTGTTTCAGTC
TATAGACAAGGATGGTTCGGGAAAAGTTTCCTATCCAAGAATTGGATGAATTTCTAAAAA
CCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACCAAA
AACAAGGATGGTGAACTAGATTATGATGAGTTCCTTAGCCTATGTACGTCAAACATACAA
GTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATCTGTCTGTTTAAAT
CACTTCTGAAGTGAATAACTTATGTTGTTTTCATTAGAATTAGAAGGTTTAATTAACATG
TTTTTCCAAATAATAATTTNCTA

consensusID : consensus_9831#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [ATGTAGAAAATAATCAAGGGGACTCATATGGGGGAGTGGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGGTAAGTTTATTGGTACTTGATAAGCAAAGTAATTTTTTTTTAATATCTTTGAAAGTTGAGCGCTTTTGATTGACAGCATAATTATAAAAGAGGATATCATCTGGTAAGAACCAAAATATAGTTAATAAGTAATTCCTAATCAGATTTATTCAAGGATGTAATATTTAATTAGCTGATAATAAACACCTTTGAAGA]

[+] EMBL AI740300             [ATGTAGAAAATAATCAAGGGGACTCATATGGGGGAGTGGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGGTAAGTTTATTGGTACTTGATAAGCAAAGTAATTTTTTTTTAATATCTTTGAAAGTTGAGCGCTTTTGATTGACAGCATAATTATAAAAGAGGATATCATCTGGTAAGAACCAAAATATAGTTAATAAGTAATTCCTAATCAGATTTATTCAAGGATGTAATATTTAATTAGCTGATAATAAACACCTTTGAAGA]




>consensus_9831#3
ATGTAGAAAATAATCAAGGGGACTCATATGGGGGAGTGGATGGAAAAATTTCCTTAGAAG
AGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGGTAAGTTTATTGGTACT
TGATAAGCAAAGTAATTTTTTTTTAATATCTTTGAAAGTTGAGCGCTTTTGATTGACAGC
ATAATTATAAAAGAGGATATCATCTGGTAAGAACCAAAATATAGTTAATAAGTAATTCCT
AATCAGATTTATTCAAGGATGTAATATTTAATTAGCTGATAATAAACACCTTTGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9831#0      ---ATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACG 57
consensus_9831#2      ------------------------------------------------------------
consensus_9831#1      AATATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACG 60
consensus_9831#3      ------------------------------------------------------------
                                                                                  

consensus_9831#0      CAATAGACAAAGACAAAAATGGGTTTC-TTACACGTGAAGAAATCGCACAATGCTTAAAA 116
consensus_9831#2      --AAAGCCNAAGCCCAANATGGGTTTCCTTACACGTGAAGAAATCGCACAATGCTTAAAA 58
consensus_9831#1      CAATAGACAAAGACAAAAATGGGTTTC-TTACACGTGAAGAAATCGCACAATGCTTAAAA 119
consensus_9831#3      --------------------------------------------------ATGTAGAAAA 10
                                                                        ***   ****

consensus_9831#0      GAAGTTGGTGTTTG--TCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATA 174
consensus_9831#2      GAAGTTGGTGTTTTGTCCCAAATGTCGCAGAC---------------------------- 90
consensus_9831#1      GAAGTTGGTGTTTG--TCCAAATGTCGCAGAGAAA-------------CTGATATGAATA 164
consensus_9831#3      TAATCAAGGGGACT----CATATGGGGGAGTG---------------------------- 38
                       **    * *        ** ***  * **                              

consensus_9831#0      GTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTG 234
consensus_9831#2      ------------------------------------------------------------
consensus_9831#1      GTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTG 224
consensus_9831#3      --GATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCC----- 91
                                                                                  

consensus_9831#0      AAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAA 294
consensus_9831#2      -------TGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAA 143
consensus_9831#1      AAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAA 284
consensus_9831#3      -------TCGTGAAAAGTGGTAAGTTTATTGGTACTTGATAAGCAAAG-TAATTTTTTTT 143
                             *  ** *   ***  **     *   * *  ***  *** * *  **      

consensus_9831#0      AAGTTTC-TATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAA 353
consensus_9831#2      AAGTTTCCTATCCAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAA 203
consensus_9831#1      AAGTTTC-TATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAA 343
consensus_9831#3      TAATATC---TTTGAAAGTTGAGCGCTTTT-----GATTGACAGCATAATTATAAAAGAG 195
                       * * **   *   * * ***   *  ***      *    * * **   **** *  * 

consensus_9831#0      AATAGTTTACGTAATTGG-ATGACACAAAATGAC-AAAAACAAGGATGGTGAACTAGATT 411
consensus_9831#2      AATAGTTTACGTAATTGG-ATGACACAAAATGACCAAAAACAAGGATGGTGAACTAGATT 262
consensus_9831#1      AATAGTTTACGTAATTGGGATGACACAAAATGAC-AAAAACAAGGGTGGTGAACTAGATT 402
consensus_9831#3      GATATCAT------CTGGTAAGAACCAAAATATAGTTAATAAGTAATTCCTAATCAGATT 249
                       ***   *       *** * **  ******      **  *    *    **  *****

consensus_9831#0      ATGATGAGTTC-TTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTT 470
consensus_9831#2      ATGATGAGTTCCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTT 322
consensus_9831#1      ATGATGAGTC--TTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTT 460
consensus_9831#3      -TATTCAAGGATGTAATATTTAATTAGCTGATA-ATAAACAC--CTTTGAAGA------- 298
                       *  * *      **   * *      *  * * * **  *    ***** **       

consensus_9831#0      AATAATGG-TCAGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTT 529
consensus_9831#2      AATAATGG-TCAGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTT 381
consensus_9831#1      AATAATGGGTCAGATGATTTTT-------------------------------------- 482
consensus_9831#3      ------------------------------------------------------------
                                                                                  

consensus_9831#0      ATGTTGTTT-CATTAGAATTAGAAGGTTTAATTAACATGTTTTTC-AAATAATAATTTCT 587
consensus_9831#2      ATGTTGTTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCCAAATAATAATTTNC 441
consensus_9831#1      ------------------------------------------------------------
consensus_9831#3      ------------------------------------------------------------
                                                                                  

consensus_9831#0      ATAATTAAATAAAAATATT 606
consensus_9831#2      -TA---------------- 443
consensus_9831#1      -------------------
consensus_9831#3      -------------------