cluster # 9835

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Schistosoma mansoni
cluster # 9835 cluster # 9835 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9835#0 length = 521 sequences # 7

consensus_9835#1 length = 354 sequences # 2
consensus_9835#2 length = 345 sequences # 2

consensusID : consensus_9835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 521
fasta sequence

                              [TCGAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTT----TCGG-AGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCATTCGATTTGTTACCTACCTATTGCTCTAT]

[-] EMBL CD063202             [TCGAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTT    TCGG AGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGGTCACGACT                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD181334             [  GAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTT    TCGG AGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTT                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD187209             [                                                TTGACGGGCATAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTT    TCGG AGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCATTCGATTTGTTA                 ]
[+] EMBL CD127576             [                                                                                                                 tgtgcaaATAGTAGGTTGAAATAGGTATGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCAT                            ]
[-] EMBL CD127961             [                                                                                                                                                TAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGCGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTAACATTCGATTTGTTACCTACCTATTGCTCTAT]
[+] EMBL CD127644             [                                                                                                                                                                          tGTTTTTTAATCACTTTCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCAT                            ]
[-] EMBL CD127613             [                                                                                                                                                                                     CACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCATT                           ]




>consensus_9835#0
TCGAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATA
GGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTT
ATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACA
TCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATG
TCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGC
CTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAA
TTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCG
TCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCC
GTTTGATTATCATTCGATTTGTTACCTACCTATTGCTCTAT

consensusID : consensus_9835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 354
fasta sequence

                              [TCTTGCACAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTCTGTGCAAAA]

[+] EMBL CD114615             [TCTTGCACAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTCTGTGCAAAA]
[+] EMBL CD114307             [                                                                                                                                                      GAATGATCACGACTGTTACATTCCTCAGTTGTGGGTATGTCTTGTGTCATTTGACCGTGCCCACATGGAACTATAGTACCAGGCCGACTGCCTCACTGCCTACTACGAGGTTGTTTAACA                                                                                    ]




>consensus_9835#1
TCTTGCACAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAA
TTCAGACTTATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTT
TTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTT
GTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTG
CCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTC
GATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTCTGTGCAAAA

consensusID : consensus_9835#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 345
fasta sequence

                              [GACGAATATGCTGATCAGAATTCACAATCGAATCAATTTGGAAAGCTACGTGAAGCACGTGTTATACAACCTCGTAGTAGGCAGTGTGGCAGGTAACATGAAAATCTATTCTTTCATTGATTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCATGTCCATTGTATAGCCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGAATATTTTCTTCTCTGTAGATTTATTCATGTATTTAGTGAGGTGTTACCAATTTGTCTTATTGCAACCCAGCTATTCCTCTTGCTTAGTGTTCTTGGACACCAATTCACTTGACAAGTCCCCAAAT]

[+] EMBL CD181491             [GACGAATATGCTGATCAGAATTCACAATCGAATCAATTTGGAAAGCTACGTGAAGCACGTGTTATACAACCTCGTAGTAGGCAGTGTGGCAGGTAACATGAAAATCTATTCTTTCATTGATTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCATGTCCATTGTATAGCCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGAATATTTTCTTCTCTGTAGATTTATTCATGTATTTAGTGAGGTGTTACCAATTTGTCTTATTGCA                                                             ]
[+] EMBL CD059489             [                                                                        CGTAGTAGGCAGTGTGGCAGGTAACATGAAAATCTATTCTTTCATTGATTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCATGTCCATTGTATAGCCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGAATATTTTCTTCTCTGTAGATTTATTCATGTATTTAGTGAGGTGTTACAAATTTGTCTTATTGCAACCCAGCTATTCCTCTTGCTTAGTGTTCTTGGACACCAATTCACTTGACAAGTCCCCAAAT]




>consensus_9835#2
GACGAATATGCTGATCAGAATTCACAATCGAATCAATTTGGAAAGCTACGTGAAGCACGT
GTTATACAACCTCGTAGTAGGCAGTGTGGCAGGTAACATGAAAATCTATTCTTTCATTGA
TTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCATGTCCATTGTATAG
CCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGAATATTTTCTTCTCTGTAGAT
TTATTCATGTATTTAGTGAGGTGTTACCAATTTGTCTTATTGCAACCCAGCTATTCCTCT
TGCTTAGTGTTCTTGGACACCAATTCACTTGACAAGTCCCCAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9835#0      TCGAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATA 60
consensus_9835#1      ---------------------------------------------------TCTTGCACA 9
consensus_9835#2      --------------------------------------------------------GACG 4
                                                                               *  

consensus_9835#0      GGGATTTTTGTCAACTCTTTTCCAATGCAATTT-TTCATGATGCTCCATAAATTCAGACT 119
consensus_9835#1      GGGATTTTTGTCAACTCTTTTCCAATGCAATTT-TTCATGATGCTCCATAAATTCAGACT 68
consensus_9835#2      AATATGCTGATCAGA--ATTCACAATCGAATCAATTTGGAAAGCTACGTGAAGCACGTGT 62
                         **  *  ***     **  ****  ***   **    * *** * * **    *  *

consensus_9835#0      TATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCAC 179
consensus_9835#1      TATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCAC 128
consensus_9835#2      TATACAA--CCTCGTAG---TAGGCAGTGT----------GGCAGGTAACATGAAAATCT 107
                      ****  *    *** **   ***  *** *          ** **      *  **    

consensus_9835#0      ATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTAT 239
consensus_9835#1      ATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTAT 188
consensus_9835#2      ATTCTTTCATTGATTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCAT 167
                      ** *  *  *  ** *  *      ** *   ** *      *  *  *    ** * **

consensus_9835#0      GTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACC---AGGCCGACTGCCACA 296
consensus_9835#1      GTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACC---AGGCCGACTGCCACA 245
consensus_9835#2      GTCC---ATTGTATAGCCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGA-ATA 223
                      ***     *  * *  ** ***   ***   * ***     *   *    *** *  * *

consensus_9835#0      CTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTG 356
consensus_9835#1      CTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTG 305
consensus_9835#2      TTTTCTTCTCTGTAGATTTATT-CATGTATTTAGTGAGGTGTTACCAATTTGTCTTATTG 282
                       *  ** **  *  * * ***  ** **  **   *  *  ** * ****  *   ****

consensus_9835#0      TGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATA 416
consensus_9835#1      TGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTCTGTGCAAAA----------- 354
consensus_9835#2      CAA------CCCAGC-TATTCCTCTTGCTTAGTGTTCTTGGACACCAATTCACTTGACAA 335
                        *        **** ***** ***   * *  **   *     * *             

consensus_9835#0      TTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAA 476
consensus_9835#1      ------------------------------------------------------------
consensus_9835#2      GTCCCCAAAT-------------------------------------------------- 345
                                                                                  

consensus_9835#0      GCCCGTTTGATTATCATTCGATTTGTTACCTACCTATTGCTCTAT 521
consensus_9835#1      ---------------------------------------------
consensus_9835#2      ---------------------------------------------