These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 952 fasta sequence [GAGCTCCTGTTTTGGTTCTAGTGGTCACTTGACTATATTTTCCTAAATGTTTCATGGTTCTGAACGTACCTTCGAAATCAGTTGGTGTGAGAAAGCATTTAGAAGTCTACGGTTTGCCACTGTCATTATGCAATACGGAAACGCGTTTACTTAGGGTTCGTGTTATTCGGGCCTTGGATCTTATGAAAAAGGATATATTCGGAGCAAGCGACCCATATTGCAAGCTATGTATATATAAAACTCAGCGGTCGACTCTTCCCTTGTGTTCACCGGTACCAACGAAAACTGTTAAGAGATCTCTCAACCCGATTTGGAACGAGGAATTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACACAATCATCTAGTCCTGTTATTGCTGAATTATCTAACACTATAGACGATGATACTGATAACCGTGTACACCTTAGTAGAAATACTTCAATAGAATCAGATACTGTCAGTGTTACTGAGACTGTTGTTGGGCCAATGCTTTCTACGTCACTTGATGAAAATTCACTTNCACCAGNTTGNGATGAACGAGTNGATCAAAATGGGCNGACATATTATATGGATCATGNTTACANGCGTACACAATGGGACAGACCTTTCTTTTC] [-] EMBL CD094453 [GAGCTCCTGTTTTGGTTCTAGTGGTCACTTGACTATATTTTCCTAAATGTTTCATGGTTCTGAACGTACCTTCGAAATCAGTTGGTGTGAGAAAGCATTTAGAAGTCTACGGTTTGCCACTGTCATTATGCAATACGGAAACGCGTTTACTTAGGGTTCGTGTTATTCGGGCCTTGGATCTTATGAAAAAGGATATATTCGGAGCAAGCGACCCATATTGCAAGCTATGTATATATAAAACTCAGCGGTCGACTCTTCCCTTGTGTTCACCGGTACCAACGAAAACTGTTAAGAGATCTCTCAACCCGATTTGGAACGAGGAATTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGG ] [-] EMBL CD094454 [ CAACGAAAACTGTTAAGAGATCTCTCAACCCGATTTGGAACGAGGAATTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGA ] [-] EMBL CD111301 [ TAAGAGATCTCTCAACCCGATTTGGAACGAGGAACTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGCTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCT ] [+] EMBL CD180340 [ TCATTTTCAGGGTTAATCCGTCAGAAAATCG TTGGTTTTCGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTAT ] [+] EMBL CD180320 [ TCATTTTCAGGGTTAATCCGTCAGAAAATCG TTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACCTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGCTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTAT ] [+] EMBL CD092534 [ TTTCAGGGTTAATCCGTCAGAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTTCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATTCCCAAA ] [+] EMBL CD171277 [ TGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACACAATCATCTAGTCCTGTTATTGCTGAATTATCTAACACTATAGACGATGATACTGATAACCGTGTACACCTTAGTAGAAATACTTCAATAGAATCAGATACTGTCAGTGTTACTGAGACTGTTGTTGGGCCAATGCTTTCTACGTCACTTGATGAAAATTCACTTNCACCAGNTTGNGATGAACGAGTNGATCAAAATGGGCNGACATATTATATGGATCATGNTTACANGCGTACACAATGGGACAGACCTTTCTTTTC] [-] EMBL CD059565 [ TCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGACC ] consensusID : consensus_9836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 419 fasta sequence [CATTTTCAGGGTAAATTAAGCCGATTCAAATTTGTAAATTTCAGGTTAATCCGTCACAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGGTAAGTCGTTTATAGATTTTAACAAACTTATGGGTACGCAGTAATTTTAGCTTTTCATGAGTTCAGCAATATCGTCTCTTATCACTTGTTGCACTTTGT] [+] EMBL CD093167 [CATTTTCAGGGTAAATTAAGCCGATTCAAATTTGTAAATTTCAGGTTAATCCGTCACAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGGTAAGTCGTTTATAGATTTTAACAAACTTATGGGTACGCAGTAATTTTAGCTTTTCATGAGTTCAGCAATATCGTCTCTTATCACTTGTTGCACTTTGT] [-] EMBL CD092539 [ cAATTTGTTAATTTCAGGTTAATCCGTCAGAAGATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATT ] consensusID : consensus_9836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [TCCACTTGTATTTGGCTTACTTGCCAAGTCATCTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACGGGGATCCTCAAG] [-] EMBL CD059496 [TCCACTTGTATTTGGCTTACTTGCCAAGTCATCTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACGGGGATCCTCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9836#0 GAGCTCCTGTTTTGGTTCTAGTGGTCACTTGACTATATTTTCCTAAATGTTTCATGGTTC 60 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ------------------------------------------------------------ consensus_9836#0 TGAACGTACCTTCGAAATCAGTTGGTGTGAGAAAGCATTTAGAAGTCTACGGTTTGCCAC 120 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ------------------------------------------------------------ consensus_9836#0 TGTCATTATGCAATACGGAAACGCGTTTACTTAGGGTTCGTGTTATTCGGGCCTTGGATC 180 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ------------------------------------------------------------ consensus_9836#0 TTATGAAAAAGGATATATTCGGAGCAAGCGACCCATATTGCAAGCTATGTATATATAAAA 240 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ------------------------------------------------------------ consensus_9836#0 CTCAGCGGTCGACTCTTCCCTTGTGTTCACCGGTACCAACGAAAACTGTTAAGAGATCTC 300 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ---------------------------------------------------CATTTTCAG 9 consensus_9836#0 TCAACCCGATTTGGAACGAGGAATTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGG 360 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 GGTAAATTAAGCCGATTCAAATTTGTAAATTTCAGGTTAATCCGTCACAAAATCGTTTGG 69 consensus_9836#0 TTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTG 420 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 TTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTG 129 consensus_9836#0 TATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGA 480 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 TATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGA 189 consensus_9836#0 GCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATT 540 consensus_9836#2 ------------------------------------------------TCCACTTGTATT 12 consensus_9836#1 GCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATT 249 ************ consensus_9836#0 TGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTC 600 consensus_9836#2 TGGCTTACTTGCCAAGTCATCTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTC 72 consensus_9836#1 TGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTC 309 ******************** *************************************** consensus_9836#0 TTGTTGAATTGTCA-------TCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCA 653 consensus_9836#2 TTGTTGAATTGTCA-------TCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCA 125 consensus_9836#1 TTGTTGAATTGGTAAGTCGTTTATAGATTTTAACAAACTTATGGGTACGCAGTAATTTTA 369 *********** * * * * *** * * ** * ** * * consensus_9836#0 ACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACACA-ATCATCTAGTCCTGTTAT 712 consensus_9836#2 ACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACGGGGATCCTCAAG--------- 176 consensus_9836#1 GC-TTTTCATGAGTTCAGCAATATCGTCTCTTATCACTTGTTGCACTTTGT--------- 419 * * ** * ** ** * *** ** * consensus_9836#0 TGCTGAATTATCTAACACTATAGACGATGATACTGATAACCGTGTACACCTTAGTAGAAA 772 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ------------------------------------------------------------ consensus_9836#0 TACTTCAATAGAATCAGATACTGTCAGTGTTACTGAGACTGTTGTTGGGCCAATGCTTTC 832 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ------------------------------------------------------------ consensus_9836#0 TACGTCACTTGATGAAAATTCACTTNCACCAGNTTGNGATGAACGAGTNGATCAAAATGG 892 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ------------------------------------------------------------ consensus_9836#0 GCNGACATATTATATGGATCATGNTTACANGCGTACACAATGGGACAGACCTTTCTTTTC 952 consensus_9836#2 ------------------------------------------------------------ consensus_9836#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||