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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 952 fasta sequence
[GAGCTCCTGTTTTGGTTCTAGTGGTCACTTGACTATATTTTCCTAAATGTTTCATGGTTCTGAACGTACCTTCGAAATCAGTTGGTGTGAGAAAGCATTTAGAAGTCTACGGTTTGCCACTGTCATTATGCAATACGGAAACGCGTTTACTTAGGGTTCGTGTTATTCGGGCCTTGGATCTTATGAAAAAGGATATATTCGGAGCAAGCGACCCATATTGCAAGCTATGTATATATAAAACTCAGCGGTCGACTCTTCCCTTGTGTTCACCGGTACCAACGAAAACTGTTAAGAGATCTCTCAACCCGATTTGGAACGAGGAATTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACACAATCATCTAGTCCTGTTATTGCTGAATTATCTAACACTATAGACGATGATACTGATAACCGTGTACACCTTAGTAGAAATACTTCAATAGAATCAGATACTGTCAGTGTTACTGAGACTGTTGTTGGGCCAATGCTTTCTACGTCACTTGATGAAAATTCACTTNCACCAGNTTGNGATGAACGAGTNGATCAAAATGGGCNGACATATTATATGGATCATGNTTACANGCGTACACAATGGGACAGACCTTTCTTTTC]
[-] EMBL CD094453 [GAGCTCCTGTTTTGGTTCTAGTGGTCACTTGACTATATTTTCCTAAATGTTTCATGGTTCTGAACGTACCTTCGAAATCAGTTGGTGTGAGAAAGCATTTAGAAGTCTACGGTTTGCCACTGTCATTATGCAATACGGAAACGCGTTTACTTAGGGTTCGTGTTATTCGGGCCTTGGATCTTATGAAAAAGGATATATTCGGAGCAAGCGACCCATATTGCAAGCTATGTATATATAAAACTCAGCGGTCGACTCTTCCCTTGTGTTCACCGGTACCAACGAAAACTGTTAAGAGATCTCTCAACCCGATTTGGAACGAGGAATTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGG ]
[-] EMBL CD094454 [ CAACGAAAACTGTTAAGAGATCTCTCAACCCGATTTGGAACGAGGAATTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGA ]
[-] EMBL CD111301 [ TAAGAGATCTCTCAACCCGATTTGGAACGAGGAACTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGCTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCT ]
[+] EMBL CD180340 [ TCATTTTCAGGGTTAATCCGTCAGAAAATCG TTGGTTTTCGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTAT ]
[+] EMBL CD180320 [ TCATTTTCAGGGTTAATCCGTCAGAAAATCG TTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACCTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGCTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTAT ]
[+] EMBL CD092534 [ TTTCAGGGTTAATCCGTCAGAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTTCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATTCCCAAA ]
[+] EMBL CD171277 [ TGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACACAATCATCTAGTCCTGTTATTGCTGAATTATCTAACACTATAGACGATGATACTGATAACCGTGTACACCTTAGTAGAAATACTTCAATAGAATCAGATACTGTCAGTGTTACTGAGACTGTTGTTGGGCCAATGCTTTCTACGTCACTTGATGAAAATTCACTTNCACCAGNTTGNGATGAACGAGTNGATCAAAATGGGCNGACATATTATATGGATCATGNTTACANGCGTACACAATGGGACAGACCTTTCTTTTC]
[-] EMBL CD059565 [ TCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGACC ]
consensusID : consensus_9836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 419 fasta sequence
[CATTTTCAGGGTAAATTAAGCCGATTCAAATTTGTAAATTTCAGGTTAATCCGTCACAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGGTAAGTCGTTTATAGATTTTAACAAACTTATGGGTACGCAGTAATTTTAGCTTTTCATGAGTTCAGCAATATCGTCTCTTATCACTTGTTGCACTTTGT]
[+] EMBL CD093167 [CATTTTCAGGGTAAATTAAGCCGATTCAAATTTGTAAATTTCAGGTTAATCCGTCACAAAATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTGTATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGAGCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATTTGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGGTAAGTCGTTTATAGATTTTAACAAACTTATGGGTACGCAGTAATTTTAGCTTTTCATGAGTTCAGCAATATCGTCTCTTATCACTTGTTGCACTTTGT]
[-] EMBL CD092539 [ cAATTTGTTAATTTCAGGTTAATCCGTCAGAAGATCGTTTGGTTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATT ]
consensusID : consensus_9836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence
[TCCACTTGTATTTGGCTTACTTGCCAAGTCATCTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACGGGGATCCTCAAG]
[-] EMBL CD059496 [TCCACTTGTATTTGGCTTACTTGCCAAGTCATCTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTCTTGTTGAATTGTCATCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCAACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACGGGGATCCTCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9836#0 GAGCTCCTGTTTTGGTTCTAGTGGTCACTTGACTATATTTTCCTAAATGTTTCATGGTTC 60
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ------------------------------------------------------------
consensus_9836#0 TGAACGTACCTTCGAAATCAGTTGGTGTGAGAAAGCATTTAGAAGTCTACGGTTTGCCAC 120
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ------------------------------------------------------------
consensus_9836#0 TGTCATTATGCAATACGGAAACGCGTTTACTTAGGGTTCGTGTTATTCGGGCCTTGGATC 180
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ------------------------------------------------------------
consensus_9836#0 TTATGAAAAAGGATATATTCGGAGCAAGCGACCCATATTGCAAGCTATGTATATATAAAA 240
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ------------------------------------------------------------
consensus_9836#0 CTCAGCGGTCGACTCTTCCCTTGTGTTCACCGGTACCAACGAAAACTGTTAAGAGATCTC 300
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ---------------------------------------------------CATTTTCAG 9
consensus_9836#0 TCAACCCGATTTGGAACGAGGAATTCATTTTCAGGGTTAATCCGTCAGAAAATCGTTTGG 360
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 GGTAAATTAAGCCGATTCAAATTTGTAAATTTCAGGTTAATCCGTCACAAAATCGTTTGG 69
consensus_9836#0 TTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTG 420
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 TTTTTGAGCTTTACGACGAAAATAGAATAACGAGGGATGATTTTTTGGGTGTCGTCACTG 129
consensus_9836#0 TATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGA 480
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 TATTTCTGCCATATCTGGAGATTGGCACGGAGGGCTCTAATTGTCGGTTGATGGCGAAGA 189
consensus_9836#0 GCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATT 540
consensus_9836#2 ------------------------------------------------TCCACTTGTATT 12
consensus_9836#1 GCTTTTTACTGCGCCCTAGAAGTTCTCGCTCCCGTGTTCGTGGTAACCTCCACTTGTATT 249
************
consensus_9836#0 TGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTC 600
consensus_9836#2 TGGCTTACTTGCCAAGTCATCTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTC 72
consensus_9836#1 TGGCTTACTTGCCAAGTCATTTAAATCCCCAAATTACAAGTCTTCGTCAGCTTCCTCCTC 309
******************** ***************************************
consensus_9836#0 TTGTTGAATTGTCA-------TCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCA 653
consensus_9836#2 TTGTTGAATTGTCA-------TCTGAACAGCAACGTAATAGTGAAGGCCAGTTATCCTCA 125
consensus_9836#1 TTGTTGAATTGGTAAGTCGTTTATAGATTTTAACAAACTTATGGGTACGCAGTAATTTTA 369
*********** * * * * *** * * ** * ** * *
consensus_9836#0 ACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACACA-ATCATCTAGTCCTGTTAT 712
consensus_9836#2 ACACCTGTATCTTCTTCACATCGTCCTAGTTTACCAACGGGGATCCTCAAG--------- 176
consensus_9836#1 GC-TTTTCATGAGTTCAGCAATATCGTCTCTTATCACTTGTTGCACTTTGT--------- 419
* * ** * ** ** * *** ** *
consensus_9836#0 TGCTGAATTATCTAACACTATAGACGATGATACTGATAACCGTGTACACCTTAGTAGAAA 772
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ------------------------------------------------------------
consensus_9836#0 TACTTCAATAGAATCAGATACTGTCAGTGTTACTGAGACTGTTGTTGGGCCAATGCTTTC 832
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ------------------------------------------------------------
consensus_9836#0 TACGTCACTTGATGAAAATTCACTTNCACCAGNTTGNGATGAACGAGTNGATCAAAATGG 892
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ------------------------------------------------------------
consensus_9836#0 GCNGACATATTATATGGATCATGNTTACANGCGTACACAATGGGACAGACCTTTCTTTTC 952
consensus_9836#2 ------------------------------------------------------------
consensus_9836#1 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||