cluster # 9839

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Schistosoma mansoni
cluster # 9839 cluster # 9839 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9839#0 length = 622 sequences # 7

consensus_9839#1 length = 574 sequences # 2
consensus_9839#2 length = 421 sequences # 2

consensusID : consensus_9839#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 622
fasta sequence

                              [GAGAACCAACCAAACCAACCACCACCACTCTTTGAATTGGCTTTTTGACTGTGTTTCTGAAGTTCAGCTTGTTGTCGACATAATACAAAATGCATCAGCTTGAATTGAAATACGTTGATCAGCTTTGCGATCAAGAGGATTCTTTTCAAAATCAATACAGAGTAGGTGACTGCGTTTTGATGTATTACCGGCTTGGTTATTGCCATTGGATAGTGACTGATTTACATGACTTGTTATCAGTACAGGTTTGATTGAAGATTTAGCAAGATAGGATTCTTTTAATGTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCCAAAGCTTGATCACCTGCACGTTGTTTAACATCAGCAGTGAGTTTATTCACGGAAAATTTCAGCACATTAGGATCACTTAATTTATCATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTGACAGCAATAGAAGATGATACATAACTTATTGGAAAATTAATTGCAGAACCAGAAACACCTGATGCAGCTGACTCTGAATAATCAATAACAGCAAATAAATGTGCTTTCTCTTCTGATGTCATTTCAGTTTCTAAACGTTTCATTAAATCACCTTCTGACGAACTTTCC]

[+] EMBL CD112162             [GAGAACCAACCAAACCAACCACCACCACTCTTTGAATTGGCTTTTTGACTGTGTTTCTGAAGTTCAGCTTGTTGTCGACATAATACAAAATGCATCAGCTTGAATTGAAATACGTTGATCAGCTTTGCGATCAAGAGGATTCTTTTCAAAATCAATACAGAGTAGGTGACTGCGTTTTGATGTATTACCGGCTTGGTTATTGCCATTGGATAGTGACTGATTTACATGACTTGTTATCAGTACAGGTTTGATTGAAGATTTAGCAAGATAGGATTCTTTTAATGTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCC                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD158824             [                                                                                                                                                                                                          CCATTGGATAGTGACTGATTTACATGACTTGTTATCAGTACAGGTTTGATTGAAGATTTAGCAAGATAGGATTCTTTTAATGTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCCAAAGCTTGATCACCTGCACGTTGTTTAACATCAGCAGTGAGTTTATTCACGGAAAATTTCAGCACATTAGGATCACTTAATTTATCATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTGACAGCAATAG                                                                                                                                                              ]
[+] EMBL CD124941             [                                                                                                                                                                                                                            TTTACATGACTTGTTATCAGTACAGGTTTGATTGAAGATTTAGCAAGATAGGATTCTTTTAATGTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCCAAAGCTTGATCACCTGCACGTTGTTTAACATCAGCAGTGAGTTTATTCACGGAAAATTTCAGCACATTAGGATCACTTAATTTATCATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTGACAACAATAGAAGATGATACATAACTTATTGGAAAATTAATTGCAGAACCAGAAACACCTGATGCAGCTGACTCTGAATAATCAATAACAGCAAATAAATGTGCTTTCTCTTCTGATGTCATTTCAGTTTCTAAACGTTTCATTAAATCACCTTCTGACGAACTTTCC]
[+] EMBL CD125011             [                                                                                                                                                                                                                            TTTACATGACTTGTTATCAGTACAGGTTTGATTGAAGATTTAGCAAGATAGGATTCTTTTAATGTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCCAAAGCTTGATCACCTGCACGTTGTTTAACATCAGCAGTGAGTTTATTCACGGAAAATTTCAGCACATTAGGATCACTTAATTTATCATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTGACAGCAATAGAAGATGATACATAACTTATTGGAAAATTAATTGCAGAACCAGAAACACCTGATGCAGCTGACTCTGAATAATCAATAACAGCAAATAAATGTGCTTTCTCTTCTGATGTCATTTCAGTTTCTAAACGTTTCATTAAATCACCTTCTGACGAACTTTCC]
[+] EMBL CD124861             [                                                                                                                                                                                                                            TTTACATGACTTGTTATCAGTACAGGTTTGATTGAGGATTTAGCAAGATAGGATTCTTTTAATGTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCCAAAGCTTGATCACCTGCACGTTGTTTAACATCAGCAGTGAGTTTATTCACGGAGAATTTCAGCACATTAGGATCACTTAATTTATCATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTGACAGCAATAGAAGATGATACATAACTTATTGGAAAATTAATTGCAGAACCAGAAACACCTGATGCAGCTGACTCTGAATAATCAATAACAGCAAATAAATGTGCTTTCTCTTCTGATGTCATTTCAGTTTCTAAACGTTTCATTAAATCACCTTCTGACGAACTTTCC]
[+] EMBL CD124838             [                                                                                                                                                                                                                            TTTACATGACTTGTTATCAGTACAGGTTTGATTGAAGATTTAGCAAGATAGGATTCTTTTAATGTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCCAAAGCTTGATCACCTGCACGTTGTTTAACATCAGCAGTGAGTTTATTCACGGAAAATTTCAGCACATTAGGATCACTTAATTTATCATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTGACAGCAATAGAAGATGATACATAACTTATTGGAAAATTAATTGCAGAACCAGAAACACCTGATGCAGCGGACTCTGAATAATCAATAACAGCAAATAAATGTGCTTTCTCTTCTGATGTCATTTCAGTTTCTAAACGTTTCATTAAATCACCTTCTGACGAACTTTCC]
[+] EMBL CD124943             [                                                                                                                                                                                                                                                                                           GTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCCAAAGCTTGATCACCTGCACGTTGTTTAACATCAGCAGTGAGTTTATTCACGGAAAATTTCAGCACATTAGGATCACTTAATTTATCATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTGACAGCAATAGAAGATGATACATAACTTATTGGAAAATTAATTGCAGAACCAGAAACACCTGATGCAGCTGACTCTGAATAATCAATAACAGCAAATAAATGTGCTTTCTCTTCTGATGTCATTTCAGTTTCTAAACGTTTCATTAAATCACCTTCTGACGAACTTTCC]




>consensus_9839#0
GAGAACCAACCAAACCAACCACCACCACTCTTTGAATTGGCTTTTTGACTGTGTTTCTGA
AGTTCAGCTTGTTGTCGACATAATACAAAATGCATCAGCTTGAATTGAAATACGTTGATC
AGCTTTGCGATCAAGAGGATTCTTTTCAAAATCAATACAGAGTAGGTGACTGCGTTTTGA
TGTATTACCGGCTTGGTTATTGCCATTGGATAGTGACTGATTTACATGACTTGTTATCAG
TACAGGTTTGATTGAAGATTTAGCAAGATAGGATTCTTTTAATGTTGGCTGAGCACCTAA
AGCTTCAAGACTATCCATTCGTAATGAAACAGCCAAAGCTTGATCACCTGCACGTTGTTT
AACATCAGCAGTGAGTTTATTCACGGAAAATTTCAGCACATTAGGATCACTTAATTTATC
ATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTGACAGCAATAGAAGATGATACATAACT
TATTGGAAAATTAATTGCAGAACCAGAAACACCTGATGCAGCTGACTCTGAATAATCAAT
AACAGCAAATAAATGTGCTTTCTCTTCTGATGTCATTTCAGTTTCTAAACGTTTCATTAA
ATCACCTTCTGACGAACTTTCC

consensusID : consensus_9839#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence

                              [CTGACAGCTGCAGAACCACGTGAGAACCAACCAAACCAACCACCACCACTCTTTGAATGGCTTTTTGACTGTGTTTCTGAAGTTCAGCTTGTTGTCGACATAATACAATGTTGAATACATCCAAAAACTCTTCATATGCCTCTATATTAGCTAACTGAGCCTGACTGAGTTTATCTCCAGATAGCTTTTTCCTCCAGATTGCAATATACTCTCTTGATATTATTCTATGTTTTGATATATGTTCCCATGACCACATAAGATGTCTGCGACGAACAGACTCCTCCAAAACAGCGTTGTATGCAAAACGCCACCAAACTTTGTAATTCTGCGAAATTGGCGTCAATGGCCTGTATTTACGGTATTTTCCCTGAGTCACGATCCTGTCTTGAGCTTCCAAAAAACAAGTAATATCATGGTATTGAGAAAGGCTGAAACACAATTCTATTTCGGAAAAGTTAACAACCAAGTCCATTTGTGGTACGGAATAATTTGTCTCCTCTGGTCTTGCGCGAATATGAAGCATTGCCGTGGACGAAATCGGTTTTACCAAGTAATGAAAGCCTGTGTTAAGATT]

[+] EMBL CD128279             [CTGACAGCTGCAGAACCACGTGAGAACCAACCAAACCAACCACCACCACTCTTTGAATGGCTTTTTGACTGTGTTTCTGAAGTTCAGCTTGTTGTCGACATAATACAATGTTGAATACATCCAAAAACTCTTCATATGCCTCTATATTAGCTAACTGAGCCTGACTGAGTTTATCTCCAGATAGCTTTTTCCTCCAGATTGCAATATACTCTCTTGATATTATTCTATGTTTTG                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD093875             [                                                                                                                                                                                     TAGCTTTTTCCTCCAGATTGCAATATACTCTCTTGATATTTTTCTATGTTTTGATATATGTTCCCATGACCACATAAGATGTCTGCGACGAACAGACTCCTCCAAAACAGCGTTGTATGCAAAACGCCACCAAACTTTGTAATTCTGCGAAATTGGCGTCAATGGCCTGTATTTACGGTATTTTCCCTGAGTCACGATCCTGTCTTGAGCTTCCAAAAAACAAGTAATATCATGGTATTGAGAAAGGCTGAAACACAATTCTATTTCGGAAAAGTTAACAACCAAGTCCATTTGTGGTACGGAATAATTTGTCTCCTCTGGTCTTGCGCGAATATGAAGCATTGCCGTGGACGAAATCGGTTTTACCAAGTAATGAAAGCCTGTGTTAAGATT]




>consensus_9839#1
CTGACAGCTGCAGAACCACGTGAGAACCAACCAAACCAACCACCACCACTCTTTGAATGG
CTTTTTGACTGTGTTTCTGAAGTTCAGCTTGTTGTCGACATAATACAATGTTGAATACAT
CCAAAAACTCTTCATATGCCTCTATATTAGCTAACTGAGCCTGACTGAGTTTATCTCCAG
ATAGCTTTTTCCTCCAGATTGCAATATACTCTCTTGATATTATTCTATGTTTTGATATAT
GTTCCCATGACCACATAAGATGTCTGCGACGAACAGACTCCTCCAAAACAGCGTTGTATG
CAAAACGCCACCAAACTTTGTAATTCTGCGAAATTGGCGTCAATGGCCTGTATTTACGGT
ATTTTCCCTGAGTCACGATCCTGTCTTGAGCTTCCAAAAAACAAGTAATATCATGGTATT
GAGAAAGGCTGAAACACAATTCTATTTCGGAAAAGTTAACAACCAAGTCCATTTGTGGTA
CGGAATAATTTGTCTCCTCTGGTCTTGCGCGAATATGAAGCATTGCCGTGGACGAAATCG
GTTTTACCAAGTAATGAAAGCCTGTGTTAAGATT

consensusID : consensus_9839#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 421
fasta sequence

                              [TGTAAAGCTTCCAAGATCTACCAACAACAGACGGCAATCACTTCTGTATATCCCAGAATCTGGTAAAATAAAATAACCTGGTTTAATGTCGATACGAACATCTGTATAAGATCGATTAGTGGCTAGATGCCTTAGACCACTTGTAGTTACTTCTTTAACTTCTTCGAAAGATGACAACACTGTATTAGATAACTCTTGAAGATAAACATCTTTAGGTGGAGTAAAGAAATGAACAATCTTATTGATAGTTTCAGCATCGTAAACTATTTGTAATGCATCAGCTTGAATTGAAATACGTTGATCAGCTTTGCGATCAAGAGGATTCTTTTCAAAATCAATACAGAGTAGGTGACTGCGTTTTGATGTATTACCGGCTTGGTTATTGCCATTGGATAGTGACTGATTTACATGACTTGTTATC]

[+] EMBL CD158581             [TGTAAAGCTTCCAAGATCTACCAACAACAGACGGCAATCACTTCTGTATATCCCAGAATCTGGTAAAATAAAATAACCTGGTTTAATGTCGATACGAACATCTGTATAAGATCGATTAGTGGCTAGATGCCTTAGACCACTTGTAGTTACTTCTTTAACTTCTTCGAAAGATGACAACACTGTATTAGATAACTCTTGAAGATAAACATCTTTAGGTGGAGTAAAGAAATGAACAATCTTATTGATAGTTTCAGCATCGTAAACTATTTGTAATGCATCAGCTTGAATTGAAATACGTTGATCAGCTTTGCGATCAAGAGGATTCTTTTCAAAATCAATACAGAGTAGGTGACTGCGTTTTGATGTATTACCGGCTTGGTTATTGCCATTGGATAGTGACTGATTTACATGACTTGTTAT ]
[-] EMBL CD158693             [ GTAAAGCTTCCAAGATCTACCAACAACAGACGGCAATCACTTCTGTATATCCCAGGATCTGGTAAAATAAAATAACTTGGTTTAATGTCGATATGAACATCTGTATAAGATCGATTAGTGGCTAGATGCCTTAGACCACTTGTAGTTACTTCTTTAACTTCTTCGAAAGATGACAACACTGTATTAGATAACTCTTGAAGATAAACATCTTTAGGTGGAGTAAAGAAATGAACAATCTTATTGATAGTTTCAGCATCGTAAACTATTTGTAATGCATCAGCTTGAATTGAAATACGTTGATCAGCTTTGCGATCAAGAGGATTCTTTTCAAAATCAATACAGAGTAGGTGACTGCGTTTTGATGTATTACCGGCTTGGTTATTGCCATTGGATAGTGACTGATTTACATGACTTGTTATC]




>consensus_9839#2
TGTAAAGCTTCCAAGATCTACCAACAACAGACGGCAATCACTTCTGTATATCCCAGAATC
TGGTAAAATAAAATAACCTGGTTTAATGTCGATACGAACATCTGTATAAGATCGATTAGT
GGCTAGATGCCTTAGACCACTTGTAGTTACTTCTTTAACTTCTTCGAAAGATGACAACAC
TGTATTAGATAACTCTTGAAGATAAACATCTTTAGGTGGAGTAAAGAAATGAACAATCTT
ATTGATAGTTTCAGCATCGTAAACTATTTGTAATGCATCAGCTTGAATTGAAATACGTTG
ATCAGCTTTGCGATCAAGAGGATTCTTTTCAAAATCAATACAGAGTAGGTGACTGCGTTT
TGATGTATTACCGGCTTGGTTATTGCCATTGGATAGTGACTGATTTACATGACTTGTTAT
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9839#0      ---------------------GAGAACCAACCAAACCAACCACCACCACTCTTTGAATTG 39
consensus_9839#2      ------------------------------------------------------------
consensus_9839#1      CTGACAGCTGCAGAACCACGTGAGAACCAACCAAACCAACCACCACCACTCTTTGAAT-G 59
                                                                                  

consensus_9839#0      GCTTTTTGACTGTGTTTCTGAAGTTCAGCTTGTTGTCGACATAATACAAAATGCATCAGC 99
consensus_9839#2      ------------------------------------------------------------
consensus_9839#1      GCTTTTTGACTGTGTTTCTGAAGTTCAGCTTGTTGTCGACATAATACAATGTTGAATACA 119
                                                                                  

consensus_9839#0      TTGAATTGAAATACGTTGATCAGCTTTGCGATCAAGAGGATTCTTTTCAAAATCAATACA 159
consensus_9839#2      ------------------------------------TGTAAAGCTTCCAAGATCTACCAA 24
consensus_9839#1      TCCAAAAACTCTTCATATGCCT-CTATATTAGCTAACTGAGCCTGACTGAGTTTATCTCC 178
                                                             *         *  *       

consensus_9839#0      GAGTAGGTGACTG-CGTTTTGATGTATTACCGGCTTGGTTATTGCCATTGGATAGTGACT 218
consensus_9839#2      CAACAGACGGCAATCACTTCTGTATATCCCAGAATCTGGTAAAATAAAATAACCTGGTTT 84
consensus_9839#1      AGATAGCTTTTTC---CTCCAGATTGCAATATACTCTCTTGATATTATTCTATGTT--TT 233
                          **           *      *         *    *      *    *       *

consensus_9839#0      GATTTACATGACTTGTTATCAGTACAGGTTTGATTGAAGATTTAGCAAGATAGGATTCTT 278
consensus_9839#2      AATGTCGATA--CGAACATCTGTATAAGATCGATTAGTGGCTAGATGCCTTAGACCACTT 142
consensus_9839#1      GATATATGTT--CCCATGACCACATAAGAT--GTCTGCGACGAACAGACTCCTCCAAAAC 289
                       ** *   *          *   * * * *   *    *                     

consensus_9839#0      TTAAT-GTTGGCTGAGCACCTAAAGCTTCAAGACTATCCATTCGTAATGAAACAGCCA-- 335
consensus_9839#2      GTAGTTACTTCTTTAACTTCT-----TCGAAAGATGACAACACTGTATTAGATAACTCTT 197
consensus_9839#1      AGCGTTGTATGCAAAACGCCA------CCAAACTTTGTAATTC--TGCGAAATTGGCGTC 341
                          *         * *  *         **   *    *  *      * *        

consensus_9839#0      AAGCTTGATCACCTGCACGTTGTTTAACATCAGCAGTGAGTTTATTCACGGAAAATTTCA 395
consensus_9839#2      GAAGATAAACATCTTTAGGTGGAGTAA----AGAAATGAACAATCTTATTGATAGTTTCA 253
consensus_9839#1      AA--TGGCCTGTATTTACGGTATTTTCCCTGAGTCACGATCCTGTCTTGAGCTTCCAAAA 399
                       *           *  * *     *      **    **           *        *

consensus_9839#0      GCACATTAGGATCACT-TAATTTATCATCTAGAAGTACTAAACTAAGCTGTCTTAAAGTG 454
consensus_9839#2      GCATCGTAAACTATTTGTAATGCATCAGCTTGAA---TTGAAATACGTTGATCAGCTTTG 310
consensus_9839#1      AACAAGTAATATCATGGTATTGAGAAAGGCTGAAACACAATTCTATTTCGGAAAAGTTAA 459
                            **   *     ** *     *    ***         **    *          

consensus_9839#0      ACAGCAATAGAAGATGATACATAACTTATTGGAAAATTAATTGCAGAACCAGAAACACCT 514
consensus_9839#2      CGATCAAGAGGATTCTTTTCA-AAATCAATACAGAGTAGGTGACTGCGTTTTGA-TGTAT 368
consensus_9839#1      CAACCAAGTCCATTTGTGGTACGGAATAATTTGTCTCCTCTGGTCTTGCGCGAA---TAT 516
                        * ***    *        *      * *          *            *     *

consensus_9839#0      GATGCAGCTGACTCTGAATAATCAATAACAGCAAATAAATGTGCTTTCTCTTCTGATGTC 574
consensus_9839#2      TACCGGCTTGGTTATTGCCATTGGATAGTGACTGATTTACATGACTTGTTATC------- 421
consensus_9839#1      GAAGCATTGCCGTGGACGAAATCGGTTTTACCAAGTAATGAAAGCCTGTGTTAAGATT-- 574
                       *          *      * *   *     *   *          * *  *        

consensus_9839#0      ATTTCAGTTTCTAAACGTTTCATTAAATCACCTTCTGACGAACTTTCC 622
consensus_9839#2      ------------------------------------------------
consensus_9839#1      ------------------------------------------------