These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1456 fasta sequence [ATGAAATTCTTCAAAATTAAACTCCAACAAATCATAGTAAATAAAAAAAAGAAAAGGAAAAGATGACTCCATGTAGAAAATGAAGTTGCTATGGTAACTAATCTGTTTAACAAAGTAACATGTTACGTGTTTACTTTTGTTCAATATTCACCATTATGAAGTGTCAATCAGATAAATAACCCTCTCCCAAAATGAAAAAATCATCATACACTTTATAATAATGGAAAGAAAATAAGTCATTTTGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCGGGAAGAAAGTGGAGAACA--AGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTTTAGAACCCGATTCATTTTTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAG-ATGAATCAACAACCTCCTTGCTTTGGTTGGCCGCTGATAATGTCTTTGAAGTTGTTGGCTTGATGTTCTCATTGCTGTGTGACACATGAGTAACTTGAGTAGCATCAGTAATGGTGGTAGAAGAAGAGGAAGAGGGAGACACTGTGTCTTGAACAGAAGTACTTGCAGATTTTTCTTTTTCTCGAATTCCTTTTA-ACCATTCACCAAAACTTAAAGGTATACGTTCCCCACTAGCTGTATCACTATC-AATCGTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGTACAGGGTAATATACCGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTTTCATTTCGATAAGGATACACATATGATGGAAATCCAGTCCATAAATGTGAGTTCATATTTTCAGTAATGTTTGTAGTATTGCTTTGAGTGGGAGAAGACAAAGAAGGCATTGAAAATGGAGTAGTATATATAGAAGTAGACG] [+] EMBL CD074062 [ATGAAATTCTTCAAAATTAAACTCCAACAAATCATAGTAAATAAAAAAAAGAAAAGGAAAAGATGACTCCATGTAGAAAATGAAGTTGCTATGGTAACTAATCTGTTTAACAAAGTAACATGTTACGTGTTTACTTTTGTTCAATATTCACCATTATGAAGTGTCAATCAGATAAATAACCCTCTCCCAAAATGAAAAAATCATCATACACTTTATAATAATGGAAAGAAAATAAGTCATTTTGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCGGGAAGAAAGTGGAGAACA AGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTA ] [-] EMBL CD197701 [ ACTCCAACAAATCATAGTAAATAAAAAAAAGAAAAGGAAAAGATGACTCCATGTAGAAAATGAAGTTGCTATGGTAACTAATCTGTTTAACAAAGTAACATGTTACGTGTTTACTTTTGTTCAATATTCACCATTATGAAGTGTCAATCAGATAAATAACCCTCTCCCAAAATGAAAAAATCATCATACACTTTATAATAATGGAAAGAAAATAAGTCATTTTGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCGGGAAGAAAGTGGAGAACA AGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCC ] [-] EMBL CD083371 [ AAAAAATTATCATACACTTTATAATAATGGAAAGAAAATAAGTCATTTCGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCGGGAAGAAAGTGGAGAACAAGAGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACC ] [+] EMBL CD068110 [ GAACA AGTTTCCGAGTTTTG TGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCA ] [-] EMBL CD079804 [ GTTTCCGAGTTNTGTTGTNTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTTTAGAACCCGATTCATTTTTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAGAATGAATCAACAA ] [+] EMBL CD154320 [ GGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTTTAGACCCCGATTCATTTTTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAG ATGAATCAACAACCTCCTT ] [+] EMBL CD059689 [ GATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTCTAGAACCCGATTCATTTTTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAG ATGAATCAACAACCTCCTTGCTTTGGTTGGCCGCTGATAATGTCTTTGAAGTTGTTGGCTTGATGTTCTCATTGCTGTGTGACACATGAGTAACTTGAGTAGCATCAGTAATGGTGGTAGAAGAAGAGGAAGAGGGAGACACTGTGTCTTGAACAGAAGTACTTGCAGATTTTTCTTTTTCTCGAATTCCTTTTA ACCATTCACCAAAACTTAAAGGTA ] [+] EMBL CD068180 [ TGATG TCTCATTGCTGTGTGACACATGAGTAACTTGAGTAGCATCAGTAATGGTGGTAGAAGAAGAGGAAGAGGGAGACACTGTGTCTTGAACAGAAGTACTTGCAGATTCTTCTTTTTCTCGAATTCCTTTTA ACCATTCACCAAAACTTAAAGGTATACGTTCCCCACTAGCTGTACCACTATC AATCGTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGTACAGGGTAATATACTGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTT ] [+] EMBL CD166625 [ aacTTACACCATTCACCAAAACTTAAAGGTATACGTT CCCACTAGCTGTATCACTATCAAATCGTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGTACAGGGTAATATACCGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTTTCATTTCGATAAGGATACACATATGATGGAAATCCAGTCCATAAATGTGAGTTCATATTTTCAGTAATGTTTGTAGTATTGCTTTGAGTGGGAGAAGACAAAGAAGGCATTGAAAATGGAGTAGTATATATAGAAGTAGACG] [+] EMBL CD166576 [ ttcac ACCATTCACCAAAACTTAAAGGTATAC TTCCCCACTAGCTGTATCACTATC AATCGTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGTACAGGGTAATATACCGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTTTCATTTCGATAAGGATACACATATGATGGAAATCCAGTCCATAAATGTGAGTTCATATTTTCAGTAATGTTTGTAGTATTGCTTTGAGTGGGAGAAGACAAAGAAGGCATTGAAAATGGAGTAGTATATATAGAAGTAGACG] consensusID : consensus_9841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [ATCGGCGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTTTCTGTTGAGCTGGATGAACATATTTCTTTTGACCCCCGATCCTTCCCAAATC] [+] EMBL BG930291 [ATCGGCGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTTTCTGTTGAGCTGGATGAACATATTTCTTTTGACCCCCGATCCTTCCCAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9841#0 ATGAAATTCTTCAAAATTAAACTCCAACAAATCATAGTAAATAAAAAAAAGAAAAGGAAA 60 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 AGATGACTCCATGTAGAAAATGAAGTTGCTATGGTAACTAATCTGTTTAACAAAGTAACA 120 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 TGTTACGTGTTTACTTTTGTTCAATATTCACCATTATGAAGTGTCAATCAGATAAATAAC 180 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 CCTCTCCCAAAATGAAAAAATCATCATACACTTTATAATAATGGAAAGAAAATAAGTCAT 240 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 TTTGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCG 300 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 GGAAGAAAGTGGAGAACAAGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGA 360 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 CTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAAC 420 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 TACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCT 480 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 AGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCA 540 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 GTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTA 600 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 TTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCA 660 consensus_9841#1 ------ATCGGCGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCA 54 **** ************************************************ consensus_9841#0 TGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCT 720 consensus_9841#1 TGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCT 114 ************************************************************ consensus_9841#0 TTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCA 780 consensus_9841#1 TTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCA 174 ************************************************************ consensus_9841#0 ACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACA 840 consensus_9841#1 ACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACA 234 ************************************************************ consensus_9841#0 TATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTTTAGAACCCGATTCATTT 900 consensus_9841#1 TATTCCGGTGGTTTTTCTGTTGAGCTGGATGAACATATTTCTTTTGACCCCCGATCCTTC 294 ************** *********************** ***** ** *** ** ** consensus_9841#0 TTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAGATGAATCAACA 960 consensus_9841#1 CCAAATC----------------------------------------------------- 301 * consensus_9841#0 ACCTCCTTGCTTTGGTTGGCCGCTGATAATGTCTTTGAAGTTGTTGGCTTGATGTTCTCA 1020 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 TTGCTGTGTGACACATGAGTAACTTGAGTAGCATCAGTAATGGTGGTAGAAGAAGAGGAA 1080 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 GAGGGAGACACTGTGTCTTGAACAGAAGTACTTGCAGATTTTTCTTTTTCTCGAATTCCT 1140 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 TTTAACCATTCACCAAAACTTAAAGGTATACGTTCCCCACTAGCTGTATCACTATCAATC 1200 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 GTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGT 1260 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 ACAGGGTAATATACCGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTTTCATTT 1320 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 CGATAAGGATACACATATGATGGAAATCCAGTCCATAAATGTGAGTTCATATTTTCAGTA 1380 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 ATGTTTGTAGTATTGCTTTGAGTGGGAGAAGACAAAGAAGGCATTGAAAATGGAGTAGTA 1440 consensus_9841#1 ------------------------------------------------------------ consensus_9841#0 TATATAGAAGTAGACG 1456 consensus_9841#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||