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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1456 fasta sequence
[ATGAAATTCTTCAAAATTAAACTCCAACAAATCATAGTAAATAAAAAAAAGAAAAGGAAAAGATGACTCCATGTAGAAAATGAAGTTGCTATGGTAACTAATCTGTTTAACAAAGTAACATGTTACGTGTTTACTTTTGTTCAATATTCACCATTATGAAGTGTCAATCAGATAAATAACCCTCTCCCAAAATGAAAAAATCATCATACACTTTATAATAATGGAAAGAAAATAAGTCATTTTGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCGGGAAGAAAGTGGAGAACA--AGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTTTAGAACCCGATTCATTTTTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAG-ATGAATCAACAACCTCCTTGCTTTGGTTGGCCGCTGATAATGTCTTTGAAGTTGTTGGCTTGATGTTCTCATTGCTGTGTGACACATGAGTAACTTGAGTAGCATCAGTAATGGTGGTAGAAGAAGAGGAAGAGGGAGACACTGTGTCTTGAACAGAAGTACTTGCAGATTTTTCTTTTTCTCGAATTCCTTTTA-ACCATTCACCAAAACTTAAAGGTATACGTTCCCCACTAGCTGTATCACTATC-AATCGTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGTACAGGGTAATATACCGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTTTCATTTCGATAAGGATACACATATGATGGAAATCCAGTCCATAAATGTGAGTTCATATTTTCAGTAATGTTTGTAGTATTGCTTTGAGTGGGAGAAGACAAAGAAGGCATTGAAAATGGAGTAGTATATATAGAAGTAGACG]
[+] EMBL CD074062 [ATGAAATTCTTCAAAATTAAACTCCAACAAATCATAGTAAATAAAAAAAAGAAAAGGAAAAGATGACTCCATGTAGAAAATGAAGTTGCTATGGTAACTAATCTGTTTAACAAAGTAACATGTTACGTGTTTACTTTTGTTCAATATTCACCATTATGAAGTGTCAATCAGATAAATAACCCTCTCCCAAAATGAAAAAATCATCATACACTTTATAATAATGGAAAGAAAATAAGTCATTTTGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCGGGAAGAAAGTGGAGAACA AGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTA ]
[-] EMBL CD197701 [ ACTCCAACAAATCATAGTAAATAAAAAAAAGAAAAGGAAAAGATGACTCCATGTAGAAAATGAAGTTGCTATGGTAACTAATCTGTTTAACAAAGTAACATGTTACGTGTTTACTTTTGTTCAATATTCACCATTATGAAGTGTCAATCAGATAAATAACCCTCTCCCAAAATGAAAAAATCATCATACACTTTATAATAATGGAAAGAAAATAAGTCATTTTGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCGGGAAGAAAGTGGAGAACA AGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCC ]
[-] EMBL CD083371 [ AAAAAATTATCATACACTTTATAATAATGGAAAGAAAATAAGTCATTTCGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCGGGAAGAAAGTGGAGAACAAGAGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACC ]
[+] EMBL CD068110 [ GAACA AGTTTCCGAGTTTTG TGTTTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCA ]
[-] EMBL CD079804 [ GTTTCCGAGTTNTGTTGTNTATGGTACATAAGATAGGGGGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTTTAGAACCCGATTCATTTTTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAGAATGAATCAACAA ]
[+] EMBL CD154320 [ GGACTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAACTACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCTAGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTTTAGACCCCGATTCATTTTTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAG ATGAATCAACAACCTCCTT ]
[+] EMBL CD059689 [ GATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCAGTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTATTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTCTAGAACCCGATTCATTTTTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAG ATGAATCAACAACCTCCTTGCTTTGGTTGGCCGCTGATAATGTCTTTGAAGTTGTTGGCTTGATGTTCTCATTGCTGTGTGACACATGAGTAACTTGAGTAGCATCAGTAATGGTGGTAGAAGAAGAGGAAGAGGGAGACACTGTGTCTTGAACAGAAGTACTTGCAGATTTTTCTTTTTCTCGAATTCCTTTTA ACCATTCACCAAAACTTAAAGGTA ]
[+] EMBL CD068180 [ TGATG TCTCATTGCTGTGTGACACATGAGTAACTTGAGTAGCATCAGTAATGGTGGTAGAAGAAGAGGAAGAGGGAGACACTGTGTCTTGAACAGAAGTACTTGCAGATTCTTCTTTTTCTCGAATTCCTTTTA ACCATTCACCAAAACTTAAAGGTATACGTTCCCCACTAGCTGTACCACTATC AATCGTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGTACAGGGTAATATACTGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTT ]
[+] EMBL CD166625 [ aacTTACACCATTCACCAAAACTTAAAGGTATACGTT CCCACTAGCTGTATCACTATCAAATCGTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGTACAGGGTAATATACCGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTTTCATTTCGATAAGGATACACATATGATGGAAATCCAGTCCATAAATGTGAGTTCATATTTTCAGTAATGTTTGTAGTATTGCTTTGAGTGGGAGAAGACAAAGAAGGCATTGAAAATGGAGTAGTATATATAGAAGTAGACG]
[+] EMBL CD166576 [ ttcac ACCATTCACCAAAACTTAAAGGTATAC TTCCCCACTAGCTGTATCACTATC AATCGTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGTACAGGGTAATATACCGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTTTCATTTCGATAAGGATACACATATGATGGAAATCCAGTCCATAAATGTGAGTTCATATTTTCAGTAATGTTTGTAGTATTGCTTTGAGTGGGAGAAGACAAAGAAGGCATTGAAAATGGAGTAGTATATATAGAAGTAGACG]
consensusID : consensus_9841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[ATCGGCGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTTTCTGTTGAGCTGGATGAACATATTTCTTTTGACCCCCGATCCTTCCCAAATC]
[+] EMBL BG930291 [ATCGGCGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCATGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCTTTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCAACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACATATTCCGGTGGTTTTTCTGTTGAGCTGGATGAACATATTTCTTTTGACCCCCGATCCTTCCCAAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9841#0 ATGAAATTCTTCAAAATTAAACTCCAACAAATCATAGTAAATAAAAAAAAGAAAAGGAAA 60
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 AGATGACTCCATGTAGAAAATGAAGTTGCTATGGTAACTAATCTGTTTAACAAAGTAACA 120
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 TGTTACGTGTTTACTTTTGTTCAATATTCACCATTATGAAGTGTCAATCAGATAAATAAC 180
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 CCTCTCCCAAAATGAAAAAATCATCATACACTTTATAATAATGGAAAGAAAATAAGTCAT 240
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 TTTGGAATACATCCACTGTAATAGTAGTATATATGTAAGATGGAAGTTTGGGTGAAGTCG 300
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 GGAAGAAAGTGGAGAACAAGTTTCCGAGTTTTGTTGTTTATGGTACATAAGATAGGGGGA 360
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 CTTAGATTGATTAATTGAACACACATAAATTAACATTTCTAAGTGAAGTAATAAAATAAC 420
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 TACAAGAAATCTAGTTCCCGCTGTCACTTTTTTTTTCAAACATCTTGGAACATGATTGCT 480
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 AGTCGACGCATAACAATGATAAATAAGGCAATAGCTACTCCAACAGCACATACTGTTGCA 540
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 GTATGATATTGAACAAGTGATGTGGATCGTCGAATATGTTCACTTGATGTACGATTATTA 600
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 TTCTGGTTCGGTGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCA 660
consensus_9841#1 ------ATCGGCGTACTAACTGATCGACCAATTATTCTATTGTGCAATCCATCTGTTCCA 54
**** ************************************************
consensus_9841#0 TGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCT 720
consensus_9841#1 TGTGTATCAGCTTGTATCTGATTTGTCCCACTTGTATTCAATTTAGATATGGAATTATCT 114
************************************************************
consensus_9841#0 TTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCA 780
consensus_9841#1 TTACATGACTCATTAGTTTCTACAGTGTTACTGCTACCACCAGTTTTCGATGATGTACCA 174
************************************************************
consensus_9841#0 ACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACA 840
consensus_9841#1 ACCAACGGAACTTCATGTTCATTCAAGTTTGTTTTCTTCACTGAATCACTATTTTGAACA 234
************************************************************
consensus_9841#0 TATTCCGGTGGTTTATCTGTTGAGCTGGATGAACATATCTCTTTAGAACCCGATTCATTT 900
consensus_9841#1 TATTCCGGTGGTTTTTCTGTTGAGCTGGATGAACATATTTCTTTTGACCCCCGATCCTTC 294
************** *********************** ***** ** *** ** **
consensus_9841#0 TTGCTTTGTGGAGAAATCGTTCCAGTCATTGTATGAACTTGATTTTCAGATGAATCAACA 960
consensus_9841#1 CCAAATC----------------------------------------------------- 301
*
consensus_9841#0 ACCTCCTTGCTTTGGTTGGCCGCTGATAATGTCTTTGAAGTTGTTGGCTTGATGTTCTCA 1020
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 TTGCTGTGTGACACATGAGTAACTTGAGTAGCATCAGTAATGGTGGTAGAAGAAGAGGAA 1080
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 GAGGGAGACACTGTGTCTTGAACAGAAGTACTTGCAGATTTTTCTTTTTCTCGAATTCCT 1140
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 TTTAACCATTCACCAAAACTTAAAGGTATACGTTCCCCACTAGCTGTATCACTATCAATC 1200
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 GTCGAACTCACTCCAGTCGCTAATGACGATGATGAGTTTGCATTCATAGGAAACGGTGGT 1260
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 ACAGGGTAATATACCGGAAAACATAACCAATATGCAATTTGTGGTGTTATATTTTCATTT 1320
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 CGATAAGGATACACATATGATGGAAATCCAGTCCATAAATGTGAGTTCATATTTTCAGTA 1380
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 ATGTTTGTAGTATTGCTTTGAGTGGGAGAAGACAAAGAAGGCATTGAAAATGGAGTAGTA 1440
consensus_9841#1 ------------------------------------------------------------
consensus_9841#0 TATATAGAAGTAGACG 1456
consensus_9841#1 ----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||