cluster # 9844

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Schistosoma mansoni
cluster # 9844 cluster # 9844 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9844#0 length = 417 sequences # 10

consensus_9844#1 length = 280 sequences # 1

consensusID : consensus_9844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 417
fasta sequence

                              [TNTCTAC-GAATTACGGGCGGGTCACTTGCCAAGGTCGCGTGTGGCTAACATGGTTAATATCCCCAAGACGAGAAATACGTTTTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGTCACCTTTTAAATGATCGCACATAAATAATTAATTGGTATTCATCATTGTTTTGGTTC]

[+] EMBL CD135338             [TNTCTAC GAATTACGGGCGGGTCACTTGCCAAGGTCGCGTGTGGCTAACATGGTTAATATCCCCAAGACGAGAAATACGTTTTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACC CCCCCCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCGTGAGATGCTTACAC                                                                                                  ]
[-] EMBL CD194101             [   aTACGGAATNACGGGCGGGTCACTTGCCAAGGTCGCGTGTGGCTAACATGG TAATATCCNCAAGACGAGAAATACGTTTTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCc                                                               ]
[+] EMBL CD160881             [                 GCGGGTCACTTGCCAAGGTCGCGTGTGGCTAACATGGTTAATATCCCCAAGACGAGAAATACGTTTTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAA                                                                                                                                                                           ]
[+] EMBL AI068267             [                                      CGTGTGGCTAACATGGTTAATATCCCCAAGACGAGAAATACGTTTTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGTCACCTTTTAAATGATCGCACATAAATAATTAATTGGTATTCATCATTGTTTTGGTTC]
[+] EMBL CD161251             [                                                     GTTAATATCCCCAAGACGAGAAATACGTTTTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAA                                                                                                                                       ]
[-] EMBL CD142624             [                                                                                  TTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGAT                                                                                                          ]
[+] EMBL CD131269             [                                                                                             CCAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAGAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGTCACCTTTTAAATGATCGCACATAAATA                              ]
[-] EMBL CD185457             [                                                                                              CAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGTCACCTTTTAAATGATCGCACATAAATAA                             ]
[-] EMBL CD185519             [                                                                                              CAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGTCACCTTTTAAATGATCGCACATAAATAA                             ]
[-] EMBL CD185420             [                                                                                              CAAATGCAAAAAACATACTTTGCATAAGGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGAAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGTCACCTTTTAAATGATCGCACATAAATAAT                            ]




>consensus_9844#0
TNTCTACGAATTACGGGCGGGTCACTTGCCAAGGTCGCGTGTGGCTAACATGGTTAATAT
CCCCAAGACGAGAAATACGTTTTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAA
GGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGA
CAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAAC
TACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAG
AATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGT
CACCTTTTAAATGATCGCACATAAATAATTAATTGGTATTCATCATTGTTTTGGTTC

consensusID : consensus_9844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [GGCAAGAATTCGGTCACGAGGCAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGTCACCTTTTAAATGATCGCACATAAATAATTA]

[+] EMBL CD077918             [GGCAAGAATTCGGTCACGAGGCAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGTCACCTTTTAAATGATCGCACATAAATAATTA]




>consensus_9844#1
GGCAAGAATTCGGTCACGAGGCAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCG
GCGGTACGACAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAA
AGCTAAAACTACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAA
GCAACTGAGAATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGG
TCAAATGGTCACCTTTTAAATGATCGCACATAAATAATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9844#0      TNTCTACGAATTACGGGCGGGTCACTTGCCAAGGTCGCGTGTGGCTAACATGGTTAATAT 60
consensus_9844#1      ------------------------------------------------------------
                                                                                  

consensus_9844#0      CCCCAAGACGAGAAATACGTTTTGTAAGAGTTCCAAATGCAAAAAACATACTTTGCATAA 120
consensus_9844#1      -------------------------------------------------GGCAAGAATTC 11
                                                                            * **  

consensus_9844#0      GGTAACTCAGTACAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGA 180
consensus_9844#1      GGTCACGAGG--CAAAAAAGGGAAAGATTCCCTGTATGCGCAGGGCAAGCGGCGGTACGA 69
                      *** **   *  ************************************************

consensus_9844#0      CAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAAC 240
consensus_9844#1      CAGGAAACAGTCAGGTTACGGTGGTCAGTCAAAACCAATTCTCAGGAGAAAAGCTAAAAC 129
                      ************************************************************

consensus_9844#0      TACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAG 300
consensus_9844#1      TACGAAAAAGATTGTGCTGCGGTTGGAATGCTCTCAATGTAAATGTAAGAAGCAACTGAG 189
                      ************************************************************

consensus_9844#0      AATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGT 360
consensus_9844#1      AATCAAGAGATGCAAACACTTCGAACTTGGTGGAGATAAGAAGAAGAAAGGTCAAATGGT 249
                      ************************************************************

consensus_9844#0      CACCTTTTAAATGATCGCACATAAATAATTAATTGGTATTCATCATTGTTTTGGTTC 417
consensus_9844#1      CACCTTTTAAATGATCGCACATAAATAATTA-------------------------- 280
                      *******************************