These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 553 fasta sequence [CTAATTATCCTAAAAAAAGAACCACAGATTCAAACACTCAAAGAAATATAGCTAT-TATATTTAGCTATGTTGCGTTTCAAAATATCTGAACACGGACCCATGACACGCTCAAATCGTTTGCGGTCAAGTTTCACGCAACGTAGAGTACCTTGGGCAACAACAGTGGCTGCACGTGGTCGATCAAGCAGTAAAGCAATCTCACCAAAATAGTCTGATGGTCTTAATTTACCAACTTCAACTTGTTCACCGGATTCAGAAGGCCTTTGCAAAACAGCAGCTGTACCCTCTGTAATAAT-AAAGAAATCATCACCATGTTCACCTTGACGTACAACAACTTCACCATCTTCGAAACGGACTGGTTCTAGAGCATCTGCTACAGTTAATCGTTCCCATTTGTCAAGATTATCTAAAATAGGTACACGACATAAGAATTCTTGATACACTTTCCGACGACGAATAGTACTCCCCATCAGTATTCTTCTATAAGAATCCCTATCAATAC-CCCATAATTTAACTT-CCGTTTTCGCTTTAACCGTAGCTGCTCTAGGCGTGC] [+] EMBL CD139944 [CTAATTATCCTAAAAAAAGAACCACAGATTCAAACACTCAAAGAAATATAGCTAT TATATTTAGCTATGTTGCGTTTCAAAATATCTGAACACGGACCCATGACACGCTCAAATCGCTTGCGGTCAAGTTTCACGCAACGTAGAGTACCTTGGGCAACAACAGTGGCTGCACGTGGTCGATCAAGCAGTAAAGCAATCTCACCAAAATAGTCTGATGGTCTTAATTTACCAACTTCAACTTGTTCACCGGATTCAGAAGGCCTTTGCAAAACAGCAGCTGTACCCTCTGTAATAATNNAAG AATCATCACCATGTTCACCTTGACGTACAAC ACTTCACCATCTTCGAAACGGACTGGTTCTAGA ] [+] EMBL CD139884 [CTAATTATCCTAAAAAAAGAACCACAGATTCAAACACTCAAAGAAATATAGCTAT TATATTTAGCTATGTTGCGTTTCAAAATATCTGAACACGGACCCATGACACGCTCAAATCGTTTGCGGTCAAGTTTCACGCAACGTAGAGTACCTTGGGCAACAACAGTGGCTGCACGTGGTCGATCAAGCAGTAAAGCAATCTCACCAAAATAGTCTGATGGTCTTAATTTACCAACTTCAACTTGTTCACCGGATTCAGAAGGCCTTTGCAAAACAGCAGCTGTACCCTCTGTAATAAT AAAG AATCATCACCATGTTCACCTTGACGTACAACAACT ] [+] EMBL CD139856 [CTAATTATCCTAAAAAAAGAACCACAGATTCAAACACTCAAAGAAATATAGCTATGTATATTTAGCTATGCTGCGATTCAAAATATCTGAACACGGACCCATGACACGCTCAAATCGTTTGCGGTCAAGTTTCACGCAACGTAGAGTACCTTGGGCAACAACAGTGGCTGCACGTGGTCG ] [+] EMBL CD136382 [ CGATCAAGCAGTAAAGCAATCTCACCAAAATAGTCTGATGGTCTTAATTTACCAACTTCAACTTGTTCACCGGATTCAGAAGGCCTTTGCAAAACAGCAGCTGTACCCTCTGTAATAAT AAAGAAATCATCACCATGTTCACCTTGACGTACAACAACTTCACCATCTTCGAAACGGACTGGTTCTAGAGCATCTGCTACAGTTAATCGTTCCCATTTGTCAAGATTATCTAAAATAGGTACACGACATAAGAATTCTTGATACACTTTCCGACGACGAATAGTACTCCCCATCAGTATTCTTCTATAAGAATCCCTATCAATAC CCCATAATTTAACTTNTCGTTTcg ] [-] EMBL CD136170 [ GATCAAGCAGTAAAGCAATCTCACCAAAATAGTCTGATGGTCTTAATTTACCAACTTCAAC TGTTCACCGGATTCAGAAGGCCTTTGCAAAACAGCAGCTGTACCCTCTGTAATAAT AAAGAAATCATCACCATGTTCACCTTGACGTACAACAACTTCACCATCTTCGAAACGGACTGGTTCTAGAGCATCTGCTACAGTTAATCGTTCCCATTTGTCAAGATTATCTAAAATAGGTACACGACATAAGAATTCTTGATACACTTTCCGACGACGAATAGTACTCCCCATCAGTATTCTTCTATAAGAATCCCTATCAATAC CCCATAATTTAACTT CCGTTTTCGC ] [-] EMBL CD136318 [ GATCAAGCAGTAAAGCAATCTCACCAAAATAGTCTGATGGTCTTAATTTACCAACTTCAACTTGTTCACCGGATTCAGAAGGCCTTTGCAAAACAGCAGCTGTACCCTCTGTAATAAT AAAGAAATCATCACCATGTTCACCTTGACGTACAACAACTTCACCATCTTCGAAACGGACTGGTTCTAGAGCATCTGCTACAGTTAATCGT ] [-] EMBL CD139949 [ ACTTCAAC TGTTCACCGGATTCAGAAGGCCTTGNCAAAACAGCAGCTGTACCCTCTGTAATAAT AAAGAAATCATCACCATGTTCACCTTGACGTACAACAACTTCACCATCTTCGAAACGGACTGGTTCTAGAGCATCTGCTACAGTTAATCGTTCCCATTTGTCAAGATTATCTAAAATAGGTACACGACATAAGAATTCTTGATACACTTTCCGACGACGAATAATACTCCCCATCAGTATTCTTCTATAAGAATCCCTATCAATAC CCCATAATTTAACTT CCGTTTACGCTTTAACCGTAGCTGCTCTAGGCGTGC] [+] EMBL CD168474 [ ATTCAGAAGGCCTTTGCAAAACAACAGCTGTACCCTTTGTAATAAT AAAGAAATCATCACCATGTTCACCTTGACGTACAACAACTTCACCATCTTCGAAACGGACTG ] [+] EMBL CD168473 [ ATGCAGAAGGCCTTTGCAAAACAGCAGCTGTACCCTCTGTAATAAT AAAGAAATCATCACCATGTTCACCTTGACGTACAACAACTTCACCATCTTCGAAACGGACTG ] [-] EMBL CD136351 [ GGCCTTTGCAAAACAGCAGCTGTACCCTCTGTAATAAT AAAGAAATCATCACCATGTTCACCTTGACGTACAACAACTTCACCATCTTCGAAACGGACTGGTTCTAGAGCATCTGCTACAGTTAATCGTTCCCATTTGTCAAGATTATCTAAAATAGGTACACGACATAAGAATTCTTGATACACTTTCCGACGACGAATAGTACTCCCCATCAGTATTCTTCTATAAGAATCCCTATCAATAC CCCATAATTTAACTT CCGTTTTCGC ] [-] EMBL CD140042 [ TCTAGAGCATCTGCTACAGTTAATCGTTCCCATTTGTCAAGATTATCTAAAATAGGTACACGACATAAGAATTCTTGATACACTTTCCGACGTCGAATAGTACTCCCCATCAGTATTCTTCTATAAGAATCCCTATCAA ACGCCCCTAATATGACCT CCGTTTTCGCTTTAACCGTAGCTGCTCTAAGCGTGC] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||