These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 555 fasta sequence [TTTGGCACGAGAGATCTTTCAAGTTTCTATACATAAAATATCAGGACATTGTGATAAGGAAATGACACTAAATGATGAAAATAACGGTGAACGCAAAACAGTTGATATTTGTGATTTAGTACTTGACTATGTAACACAGTTTCCATTTGCTAAAGATGTAAAATCACGTATTAATTTAGATGATATTCACTCATCTGATATTGATTTTACACGTTTACATATTACTCATAAAAAAACAGAATACCTCTTACCAAATATTGTCAATAGTGATGCCAAACAAAGTATTGCAGTGCCACCAACGCCTTTATCGCCAACTCTCAAGAAAAATCTTAAAAGTCATGTTCTATTCTCATCTATATTTACAAACAAAACAAGTGAAACACAGACAAATCATTTAAGAACTGAACGTCGAACAAGTTCATCTTGTCGACTGAGTTTACAAAAGGTTGTTACAAAGGGTGGAAGTATAAATTTGCAAATAGGACCCCCAAGTATGTCTGTGCAAGCTAACGGGGGTTTTCGACGTGAATTAACAATGTCTAAGAATATGGAAGA] [+] EMBL CD082238 [TTTGGCACGAGAGATCTTTCAAGTTTCTATACATAAAATATCAGGACATTGTGATAAGGAAATGACACTAAATGATGAAAATAACGGTGAACGCAAAACAGTTGATATTTGTGATTTAGTACTTGACTATGTAACACAGTTTCCATTTGCTAAAGATGTAAAATCACGTATTAATTTAGATGATATTCACTCATCTGATATTGATTTTACACGTTTACATATTACTCATAAAAAAACAGAATACCTCTTACCAAATATTGTCAATAGTGATGCCAAACAAAGTATTGCAGTGCCACCAACGCCTTTATCGCCAACTCTCAAGAAAAATCTTAAAAGTCATGTTCTATTCTCATCTATATTTACAAACAAAACAAGTGAAACACAGACAAATCATTTAAGAACTGAACGTCGAACAAGTTCATCTTGTCGACTGAGTTTACAAAAGGTTGTTACAAAGGGTGGAAGTATAAATTTGCAAATAGGACCCCCAAGTATGTCTGTGCAAGCTAACGGGGGTTTTCGACGTGAATTAACAA ] [+] EMBL CD078412 [ atcatTTTCAAGTTTCTATACATAAAATATCAGGACATTGTGATAAGGAAATGACACTAAATGATGAAAATAACGGTGAACGCAAAACAGTTGATATTTGTGATTTAGTACTTGACTATGTAACACAGTTTCCATTTGCTAAAGATGTAAAATCACGTATTAATTTAGATGATATTCACTCATCTGATATTGATTTTACACGTTTACATATTACTCATAAAAAAACAGAATACCTCTTACCAAATATTGTCAATAGTGATGCCAAACAAAGTATTGCAGTGCCACCAACGCCTTTATCGCCAACTCTCAAGAAAAATCTTAAAAGTCATGTTCTATTCTCATCTATATTTACAAACAAAACAAGTGAAACACAGACAAATCATTTAAGAACTGAACGTCGAACAAGTTCATCTTGTCGACTGAGTTTACAAAAGGTTGTTACAAAGGGTGGAAGTATAAATTTGCAAATAGGACCCCCAAGTATGTCTGTGCAAGCTAACGGNGGTTTTCGACGTGAATTAACAATGTCTAAGAATATGGAAGA] consensusID : consensus_9849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 542 fasta sequence [TGACGTTCTTTATCGTTACTCTTTCCTTTCCTTTCTTCATAAACATCATTTGATACTTTTCGAACATTGACTGTTGGTTTCTTGTAAATACGTTTAATATTTTGATATTCTTGATATTTAGGTTTATTATAACTCTTATCATCATAACCTGGTTTATTCGTATCATC-AAAAAAGTGATCATAATAATATTTCAATTTCATGATCACCGATTTATCATTATTATTATTTGATAACCAATTTAGATGATTATTGATATGATGATGATTAATAGATTTACTTGATTGATAACCTACTTGTTTGTTATTATTGTGATATTTTCTAAGATTATCATTATAATAAAAAGACTTTGATACTTGATATTGATCATTATAGCCGAATTTCTTTAATTTCTGTACATCAGCTCTATACTTATATGTCGGTTCTCTGTGTAATCGATCCCTGTAATGTGGATTTGAAACTTCAGGCATCTTGTAATTAGATTTACTATATATAGAATTTGATTTCTTTTTATTAACTGTGTTATGATCTGACTGGGCATATTT] [-] EMBL CD067626 [TGACGTTCTTTATCGTTACTCTTTCCTTTCCTTTCTTCATAAACATCATTTGATACTTTTCGAACATTGACTGTTGGTTTCTTGTAAATACGTTTAATATTTTGATATTCTTGATATTTAGGTTTATTATAACTCTTATCATCATAACCTGGTTTATTCGTATCATC AAAAAAGTGATCATAATAATATTTCAATTTCATGATCACCGATTTATCATTATTATTATTTGATAACCAATTTAGATGATTATTGATATGATGATGATTAATAGATTTACTTGATTGATAACCTACTTGTTTGTTATTATTGTGATATTTTCTAAGATTATCATTATAATAAAAAGACTTTGATACTTGATATTGATCATTATAGCCGAATTTCTTTAATTTCTGTACATCAGCTCTATACTTATATGT ] [+] EMBL CD062074 [ TTTCCTTTCCTTTCTTCATAAACATCATTTGATACTTTTCGAACATTGACTGTTGGTTTCTTGTAAATACGTTTAATATTTTGATATTCTTGATATTTAGGTTTATTATAACTCTTATCATCATAACCTGGTTTATTCGTATCATC AAAAAAGTGATCATAATAATATTTCAATTTCATGATCACCGATTTATCATTATTATTATTTGATAACCAATTTAGATGATTATTGATATGATGATGATTAATAGATTTACTTGATTGATAACCTACTTGTTTGTTATTATTGTGATATTTTCTAAGATTATCATTATAATAAAAAGACTTTGATACTTGATATTGATCATTATAGCCGAATTTCTTTAATTTCTGTACATCAGCTCTATACTTATATGTCGGTTCTCTGTGTAATCGATCCCTGTAATGTGGATTTGAAACTTCAGGCATCTTGTAATTAGATTTACTATATATAGAATTTGATTTCTTTTTATTAACTGTGTTATGATCTGACTGGGCATATTT] [+] EMBL CD059772 [ TTTATTATAACTCTTATCATCATAACCTGGTTTATTCGTATCATCAAAAAAAGTGATCATAATAATATTTCAATTTCATGATCACCGATTTATCATTATTATTATTTGATAACCAATTTAAATGATTATTGATATGATGATGATTAATAGATTTACTTGATTGATA ] consensusID : consensus_9849#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence [AATAATGAAATATTGAAGAGTGAAAGAAAGAAGGGAAATTCATATTATTATGATAGAAATACAAATGATAAAGCTTCATCTGCCAGTCACAAAGGTGA-CGAAGTTATAATAATGACAATTATCGAACATCCTATTATGATGATATTAAATATGCCCAGTCAGATCATAACACAGTTAATAAAAAGAAATCAAATTCTATATATAGTAAATCTAATTACAAGATGCCTGAAGTTTCAAATCCACATTACAGATACGATAGATCCGTCCTTTTTATCGCGTAGCTTGACAGAGATCGAACCTTCAAATATTGTTTCCACTTGAAATTTACCGTAGTATTCATCCTCAGTAATAATTAACTCAGCACGTGTGTTATATCCTGGAGGGACAACTATCTCTGTATCTAAGGTCCA] [+] EMBL SMAA69191 [AATAATGAAATATTGAAGAGTGAAAGAAAGAAGGGAAATTCATATTATTATGATAGAAATACAAATGATAAAGCTTCATCTGCCAGTCACAAAGGTGA CGAAGTTATAATAATGACAATTATCGAACATCCTATTATGATGATAT ] [+] EMBL CD060190 [ AATACAGATGATAAAAGTTCATCTGGCAGTCACAAAGATGATCGAAGTTATAATAATGACAATTATCGAACATCCTATTATGATGATATTAAATATGCCCAGTCAGATCATAACACAGTTAATAAAAAGAAATCAAATTCTATATATAGTAAATCTAATTACAAGATGCCTGAAGTTTCAAATCCACATTACAGATACGATAGATCCGTCCTTTTTATCGCGTAGCTTGACAGAGATCGAACCTTCAAATATTGTTTCCACTTGAAATTTACCGTAGTATTCATCCTCAGTAATAATTAACTCAGCACGTGTGTTATATCCTGGAGGGACAACTATCTCTGTATCTAAGGTCCA] consensusID : consensus_9849#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 388 fasta sequence [GATATATTTAAAAAGAAATGGTTTTTTAAATATTACTCAAAATAAATGGTAGTAGCCCACAGTTCATTTAAATTTTCTCTTCCTGCAATTCCACACGCTGACCAACACCATAATGACAATGACAAGAGCCCTCATTAACGAAACAAACAGCATTAGTTGAATTTGGTATTGGATGAAATCCATTTTTAGCAGTTAGCAATTTACTCAAATCATTTATAATTACAACAGATACGATAGATCCGTCCTTTTTATCGCGTAGCTTGACAGAGATCGAACCTTCAAATATTGTTTCCACTTGAAATTTACCGTAGTATTCATCCTCAGTAATAATTAACTCAGCACGTGTGTTATATCCTGGAGGGACAACTATCTCTGTATCTAAGGTCCA] [+] EMBL CD075847 [GATATATTTAAAAAGAAATGGTTTTTTAAATATTACTCAAAATAAATGGTAGTAGCCCACAGTTCATTTAAATTTTCTCTTCCTGCAATTCCACACGCTGACCAACACCATAATGACAATGACAAGAGCCCTCATTAACGAAACAAACAGCATTAGTTGAATTTGGTATTGGATGAAATCCATTTTTAGCAGTTAGCAATTTACTCAAATCATTTATAATTACAACAGATACGATAGATCCGTCCTTTTTATCGCGTAGCTTGACAGAGATCGAACCTTCAAATATTGTTTCCACTTGAAATTTACCGTAGTATTCATCCTCAGTAATAATTAACTCAGCACGTGTGTTATATCCTGGAGGGACAACTATCTCTGTATCTAAGGTCCA] [+] EMBL CD077292 [GATATATTTAAAAAGAAATGGTTTTTTAAATATTACTCAAAATAAATGGTAGTAGCCCACAGTTCATTTAAATTTTCTCTTCCTGCAATTCCACACGCTGACCAACACCATAATGACAATGACAAGAGCCCTCATTAACGAAACAAACAGCATTAGTTGAATTTGGTATTGGATGAAATCCATTTTTAGCAGTTAGCAATTTACTCAAATCATTTATAATTACAACAGATACGATAGATCCGTCCTTTTTATCGCGTAGCTTGACAGAGATCGAACCTTCAAATATTGTTTCCACTTGAAATTTACCGTAGTATTCATCCTCAGTAATAATTAACTCAGCACGTGTGTTATATCCTGGAGGGACAACTATCTCTGTATCTAAGGTCCA] consensusID : consensus_9849#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TAATTAACTCAGCACGTGTGTTATATCCTGGAGGGACAACTATCTGTAGATGTTGTAAACAGATATTGACAAATAAAACAAATAAGCGGAAAAAGTAAACCAATAAATGAACTGAGTAAGAATATTGAACTTGAATAAATGAATCAACCAGATACATTTTTCAGCAACCTTAAACTCTATTACAGAAGATGTGTGTCAAACAATATGTAAATCATATCCTCTGTCATTTTCCACCTTCGATATTTTTAATCAATACTCTTTATCAACTTTGAAGACGGATATATATAAGGGAGCTATTATGGTTCATTAACTGATGGGTCGCTAACACAGAGGAGAAGGTTCATGTTAACTGTAGCTGCTACCATGACTTGGAAGTCGGG] [+] EMBL CD120792 [TAATTAACTCAGCACGTGTGTTATATCCTGGAGGGACAACTATCTGTAGATGTTGTAAACAGATATTGACAAATAAAACAAATAAGCGGAAAAAGTAAACCAATAAATGAACTGAGTAAGAATATTGAACTTGAATAAATGAATCAACCAGATACATTTTTCAGCAACCTTAAACTCTATTACAGAAGATGTGTGTCAAACAATATGTAAATCATATCCTCTGTCATTTTCCACCTTCGATATTTTTAATCAATACTCTTTATCAACTTTGAAGACGGATATATATAAGGGAGCTATTATGGTTCATTAACTGATGGGTCGCTAACACAGAGGAGAAGGTTCATGTTAACTGTAGCTGCTACCATGACTTGGAAGTCGGG] consensusID : consensus_9849#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [GAAATGATCAAACTCCATCTGCCAGGCACAACGATGATCCTGGGTGTCATACTGACAGTTATCGAACATACTATTATGATGATATTAAATATGCCCAGCCAGATCATAACACAGGTGATGAAAAGAA] [+] EMBL AI976493 [GAAATGATCAAACTCCATCTGCCAGGCACAACGATGATCCTGGGTGTCATACTGACAGTTATCGAACATACTATTATGATGATATTAAATATGCCCAGCCAGATCATAACACAGGTGATGAAAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9849#2 ------------------------------------------------------------ consensus_9849#5 ------------------------------------------------------------ consensus_9849#3 ------------------------------------------------------------ consensus_9849#1 TGACGTTCTTTATCGTTACTCTTTCCTTTCCTTTCTTCATAAACATCATTTGATACTTTT 60 consensus_9849#4 ------------------------------------------------------------ consensus_9849#0 ---------------------------------TTTGGCACGAGAGATCTTTCAAGTTTC 27 consensus_9849#2 ----------------------------------------------------AATAATGA 8 consensus_9849#5 ------------------------------------------------------------ consensus_9849#3 ------------------------------------------------------------ consensus_9849#1 CGAACATTGACTGTTGGTTTCTTGTAAATACGTTTAATATTTTGATATTCTTGATATTTA 120 consensus_9849#4 ------------------------------------------------------------ consensus_9849#0 TATACATAAAATATCAGGACATTGTGATAAGGAAATGACACTAAATGATGAAAATAACGG 87 consensus_9849#2 AATATTGAAGAGTGAAAGAAAGAAGGGAAATTCATATTATTATGATAGAAAT------AC 62 consensus_9849#5 -----------------------------------------------------------G 1 consensus_9849#3 ----------GATATATTTAAAAAGAAATGGTTTTTTAAATATTACTCAAA-------AT 43 consensus_9849#1 GGTTTATTATAACTCTTATCATCATAACCTGGTTTATTCGTATCATCAAAAA------AG 174 consensus_9849#4 ------------------------TAATTAACTCAGCACGTGTGTTATATCC------TG 30 consensus_9849#0 TGAACGCAAAACAGTTGATATTTGTGATTTAGTACTTGACTATGTAACACAGTTTCCATT 147 consensus_9849#2 AAAT---GATAAAGCTTCATCTGCCAGTCACAAAGGTGA-CGAAGTTATAATAATGACAA 118 consensus_9849#5 AAAT---GATCAAACTCCATCTGCCAGGCACAACGATGATCCTGGGTGTCATACTGACAG 58 consensus_9849#3 AAAT---GGTAGTAGCCCACAGTTCATTTAAAT---TTTCTCTTCCTGCAATTCCACACG 97 consensus_9849#1 TGATCATAATAATATTTCAATTTCATGATCACCGATTTATCATTATTATTATTTGATAAC 234 consensus_9849#4 GAGG---GACAACTATCTGTAGATGTTGTAAACAGATATTGACAAATAAAACAAATAAGC 87 consensus_9849#0 TGCTAAAGATGTAAAATCACGTATTAATTTAGATGATATTCACTCATCTGATATTGATTT 207 * * * consensus_9849#2 TTATCGAACATCCTATT---ATGATGATATTAAATATGCCCAGTCAGATCATAA-CACAG 174 consensus_9849#5 TTATCGAACATACTATT---ATGATGATATTAAATATGCCCAGCCAGATCATAA-CACAG 114 consensus_9849#3 CTGACCAACA--CCATA---ATGACAATGACAAGAGCCCTCATTAACGAAACAAACAGCA 152 consensus_9849#1 CAATTTAGATGATTATTGATATGATGATGATTAATAGATTTACTTGATTGATAA-CCTAC 293 consensus_9849#4 GGAAAAAGTAAACCAATAA-ATGAACTGAGTAAGAATATTGAACTTGAATAAAT---GAA 143 consensus_9849#0 TACACGTTTACATATTACTCATAAAAAAACAGAATACCTCTTACCAAATATTGTCAATAG 267 ** * * consensus_9849#2 TTA-ATAAAAAGAAATCAAATTCTATATATAGTAAATCTAATTACAAGATGCCTGAAGTT 233 consensus_9849#5 GTG-ATGAAAAGAA---------------------------------------------- 127 consensus_9849#3 TTA-GTTGAATTTGGTATTGGATGAAATCCATTTTTAGCAGTTAGCAATTTACTCAAATC 211 consensus_9849#1 TTG-TTTGTTATTATTGTGATATTTTCTAAGATTATCATTATAATAAAAAGACTTTGATA 352 consensus_9849#4 TCA-ACCAGATACATTTTTCAGCAACCTTAAACTCTATTACAGAAGATGTGTGTCAAACA 202 consensus_9849#0 TGATGCCAAACAAAGTATTGCAGTGCCACCAACGCCTTTATCGCCAACTCTCAAGAAAAA 327 consensus_9849#2 TCAAATCCACATTACAGATACGATAGATCCGTCCTTTTTATCGCGTAGCTTGACAG---- 289 consensus_9849#5 ------------------------------------------------------------ consensus_9849#3 ATTTATAATTACAACAGATACGATAGATCCGTCCTTTTTATCGCGTAGCTTGACAG---- 267 consensus_9849#1 CTTGATATTGATCATTATAGCCGAATTTCTTTAATTTCTGTACATCAGCTCTATACTTAT 412 consensus_9849#4 ATATGTAA--ATCATATCCTCTGTCATTTTCCACCTTCGATATTTTTAATCAATACTC-T 259 consensus_9849#0 TCTTAAAA--GTCATGTTCTATTCTCATCTATATTTACAAACAAAACAAGTGAAACAC-- 383 consensus_9849#2 AGATCGAACCTTCAAATATTGTTTCCACTTGAAATTTACCGTAGTATTCATCCTCAGTAA 349 consensus_9849#5 ------------------------------------------------------------ consensus_9849#3 AGATCGAACCTTCAAATATTGTTTCCACTTGAAATTTACCGTAGTATTCATCCTCAGTAA 327 consensus_9849#1 ATGTCGGTTCTCTGTGTAATCGATCCCTGTAATGTGGATTTGAAACTTCAGGCATCTTGT 472 consensus_9849#4 TTATC-AACTTTGAAGACGGATATATATAAGGGAGCTATTATGGTTCATTAACTGATGGG 318 consensus_9849#0 AGACAAATCATTTAAGAACTGAACGTCGAACAAGTTCATCTTGTCGACTGAGTTTACAAA 443 consensus_9849#2 TAATTAACTCAGCACGTGTGTTAT---ATCCTGGAGGGACAACTATCTCTGTATCTAA-- 404 consensus_9849#5 ------------------------------------------------------------ consensus_9849#3 TAATTAACTCAGCACGTGTGTTAT---ATCCTGGAGGGACAACTATCTCTGTATCTAA-- 382 consensus_9849#1 AATTAGATTTACTATATATAGAATTTGATTTCTTTTTATTAACTGTGTTATGATCTGACT 532 consensus_9849#4 TCGCTAACACAGAGGAGAAGGTTC--ATGTTAACTGTAGCTGCTACCATGACTTGGAAGT 376 consensus_9849#0 AGGTTGTTACAAAGGGTGGAAGTATAAATTTGCAAATAGGACCCCCAAGTATGTCTGTGC 503 consensus_9849#2 -GGTCCA--------------------------------------------- 410 consensus_9849#5 ---------------------------------------------------- consensus_9849#3 -GGTCCA--------------------------------------------- 388 consensus_9849#1 GGGCATATTT------------------------------------------ 542 consensus_9849#4 CGGG------------------------------------------------ 380 consensus_9849#0 AAGCTAACGGGGGTTTTCGACGTGAATTAACAATGTCTAAGAATATGGAAGA 555 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||