cluster # 9851

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Schistosoma mansoni
cluster # 9851 cluster # 9851 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9851#0 length = 850 sequences # 8

consensus_9851#1 length = 545 sequences # 3

consensusID : consensus_9851#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 850
fasta sequence

                              [GGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCATGCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATCTATCTATCTGTGTGTGTGTCTATATCTTTCTCTCCGTCTA-TTATATTAACTGTTGCTTTACTTTATGCA]

[+] EMBL CD168148             [GGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATGTTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGACTTTTCCCATGCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACAACATGATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCANAAATAAAATTATCAAAATGT                                                                                                                                                                                 ]
[+] EMBL CD066880             [                       GGACAGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCATATATTAAATGAAAATTTCATACGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCATATTATCAACAAGGACTTTATGTTGTGCATACTTTTCCACCATGTGATTTTTCCCATGCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAAGCGAATCAATCTCATTTATTAGTAGTTATAACAACAGTTTATACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD066363             [                              GCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAAATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCATGCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD086892             [                                                                                                                                    AAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCATACACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGC                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD162580             [                                                                                                                                                                                                                                                                                       CAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACTACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACGAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATCTATCTATCTGTGTGTGTGTCTATATCTTTCTCTCCGTCTA TTATATTAACTGTTGCTTTACTTTATGCA]
[+] EMBL CD162605             [                                                                                                                                                                                                                                                                                       CAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAACGTACTTTATTGGATAATATGTGTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATCTATCTATCTGGGTGTGTGTCTATATCTTTCTCTCCGGCTA TTATAT                       ]
[-] EMBL CD110995             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATACGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATTTATCTATCTGTGCGTGTGTTTATATCTTTCTCTCCGTCTA TTATATTAACTGTTGCTTT          ]
[-] EMBL CD110925             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATTTTTTGCCGACTGACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGTACTGCAACAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATCTATCTATCTGTGTGTGTGTTTATATCTTTCTCTCCGTCTAGTTATATTAACTGTTGCTTTA         ]




>consensus_9851#0
GGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCT
GGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGT
TACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAA
GGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCATGCACAACTTGGCCTA
GCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCTCATTTATTAGTAGTT
ATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGT
GTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTC
ATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCAT
AATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGA
TATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGC
ATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAA
AATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTC
ATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTAT
CTATCTATCTGTGTGTGTGTCTATATCTTTCTCTCCGTCTATTATATTAACTGTTGCTTT
ACTTTATGCA

consensusID : consensus_9851#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 545
fasta sequence

                              [CCAGCACAACTAGAAGGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGTTGATACCCTGTCTTTGTTTTGCCACTCGTAGCTTCCTTTTAACATAGTCCTTCGCTAATCAACCAATGTGCCACAAGTTAGTTCCTAGTAGGGTCAGACAGTAAAATACATCTTGACCACCTCACATGATGACCATACGATTTTTGTCTTACTTACCTAATAATCTCTATGTAACCTCTTAACATGCCCAAGCAACGCTTCAAAGACATTTGTGATCTAATGTTGCTAGTACTACACATATGTTCTCTAATTTTAAAGGACATGTTTAAAAAATCGTAAAGTGTGGTACACAGTCAACTTTTGTG]

[+] EMBL CD120742             [CCAGCACAACTAGAAGGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGTTGATACCCT                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD091709             [                                                                                                                                                      ATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGTTGATACCCTGTCTTTGTTTTGCCACTCGTAGCTTCCTTTTAACATAGTCCTTCGCTAATCAACCAATGTGCCACAAGTTAGTTCCTAGTAGGGTCAGACAGTAAAATACATCTTGACCACCTCACATGATGACCATACGATTTTTGTCTTACTTACCTAATAATCTCTATGTAACCTCTTAACATGCCCAAGCAACGCTTCAAAGACATTTGTGATCTAATGTTGCTAGTACTACACATATGTTCTCTAATTTTAAAGGACATGTTTAAAAAATCGTAAAGTGTGGTACACAGTCAACTTTTGTG]
[-] EMBL CD091683             [                                                                                                                                                      ATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGTTGATACCCTGTCTTTGTTTTGCCACTCGTAGCTTCCTTTTAACTTACTCCTTCACTGACCAACCATTGTGCCACAAGTTAGTTCCTAGTAGGGTCATACAGTAAAATACATCTTAACCACTTCACATGATGACCAAACGATTTTTTTCTTATTTACCTAATAATCTCTATCTAACCTCTTAACATGCACAAGCAACGCTTCAAAGACATTTGTGATCAAATGTTGCTAGTACTCTACATATGTTCTCTAATTTTAAAGGACATGTTTAAAAAATCGAAAAGTGTGGTACACAGTCAACTTCTGTG]




>consensus_9851#1
CCAGCACAACTAGAAGGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGT
CTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAAT
GAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCAT
CCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGT
TGATACCCTGTCTTTGTTTTGCCACTCGTAGCTTCCTTTTAACATAGTCCTTCGCTAATC
AACCAATGTGCCACAAGTTAGTTCCTAGTAGGGTCAGACAGTAAAATACATCTTGACCAC
CTCACATGATGACCATACGATTTTTGTCTTACTTACCTAATAATCTCTATGTAACCTCTT
AACATGCCCAAGCAACGCTTCAAAGACATTTGTGATCTAATGTTGCTAGTACTACACATA
TGTTCTCTAATTTTAAAGGACATGTTTAAAAAATCGTAAAGTGTGGTACACAGTCAACTT
TTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9851#0      ---------------GGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGT 45
consensus_9851#1      CCAGCACAACTAGAAGGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGT 60
                                     *********************************************

consensus_9851#0      CTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAAT 105
consensus_9851#1      CTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAAT 120
                      ************************************************************

consensus_9851#0      GAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCAT 165
consensus_9851#1      GAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCAT 180
                      ************************************************************

consensus_9851#0      CCAGATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCAT 225
consensus_9851#1      CCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGT 240
                      ****************    *** * *  *  *****  *       ******  *   *

consensus_9851#0      GCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCT 285
consensus_9851#1      TGATACCCTGTCTTTGTTTTGCCA----CTCGTAGC--TTCCTTTTAACATAGTC--CTT 292
                        * * * ** * * * *   **      ** ***   *    *  *    * **    *

consensus_9851#0      CATTTATTAGTAGTTATAACAACAGTTTAGACG-AATGTCATCTAATCATCAAATGTACT 344
consensus_9851#1      CGCTAATCAACCAATGTGCCACAAGTTAGTTCCTAGTAGGGTCAGACAGTAAAATACATC 352
                      *  * ** *     * *  **  ****    *  * *    **  *   * ****  *  

consensus_9851#0      TT-ATTGGATAATATGTGTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATT 403
consensus_9851#1      TTGACCACCTCACATG---ATGACCATACGATTTTTGT----CTTACTTACCTAATAATC 405
                      ** *     * * ***   *  ** * *  **** * *     *   ***   *** ** 

consensus_9851#0      GTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGG 463
consensus_9851#1      TCTA----TGTAACCTCTTA---ACATGCCCAAGCAACGCTT-CAAAGACATTTGTGATC 457
                         *    ** *  *** **   * *   * **    * *    * * ***   ****  

consensus_9851#0      CACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGG 523
consensus_9851#1      TAATGTTGCTAGTAC-TACACATATGTTCT---CTAATTT-TAAAGGACATGTTTAAAAA 512
                       * *  ** *  * * **  *** * **     ****     **** **     **    

consensus_9851#0      ATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCAT 583
consensus_9851#1      ATCGTAAAGTGTGGT-ACACAGTCAACTTTTGTG-------------------------- 545
                      **  * ** * *  * * *     ** *  ***                           

consensus_9851#0      CCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAAC 643
consensus_9851#1      ------------------------------------------------------------
                                                                                  

consensus_9851#0      ATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTT 703
consensus_9851#1      ------------------------------------------------------------
                                                                                  

consensus_9851#0      TTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTA 763
consensus_9851#1      ------------------------------------------------------------
                                                                                  

consensus_9851#0      TACGTATTTCTTTCTATCTATCTATCTGTGTGTGTGTCTATATCTTTCTCTCCGTCTATT 823
consensus_9851#1      ------------------------------------------------------------
                                                                                  

consensus_9851#0      ATATTAACTGTTGCTTTACTTTATGCA 850
consensus_9851#1      ---------------------------