cluster # 9852

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Schistosoma mansoni
cluster # 9852 cluster # 9852 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9852#0 length = 818 sequences # 10

consensus_9852#1 length = 461 sequences # 1

consensusID : consensus_9852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 818
fasta sequence

                              [AGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTTTAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGAGAGAATTTAGGACAGTTTCAGTGTACCAAAATGAGGATCTAAGAAGGAAAGTTATAAATTTAGAAATATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGAAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT-AGCCAGAGTAGCGAACACTCGAGGGTCAACTT-CACCAGTGTTCTCATTT-ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT]

[+] EMBL AI976426             [AGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTTTAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGAGAGAATTTAGGACAGTTTCAGTGTACCAAAATGAGGATCTAAGAAGGAAAGTTATAAATTTAGAAATATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGAAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGT                                                                                                                                                                                                                                                                                        ]
[-] EMBL BG930437             [                                                                                                                                                                                                                                                                     tgatggcGGATCTAAAAAGGAAAGTTATAAATTTAGAAATTTCATCCCCTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGAAAGTGGAGTTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGAa                                                                                                                                                                                                                                     ]
[+] EMBL CD178542             [                                                                                                                                                                                                                                                                                       GGAAAGTTATAAATTTAGAAATATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGAAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGTACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCA                                                                                                                               ]
[-] EMBL CD084149             [                                                                                                                                                                                                                                                                                                                                                                 AATCAGAAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCC TCGTCTCG TATTTGGCGCTGCCATc            ]
[-] EMBL CD135635             [                                                                                                                                                                                                                                                                                                                                                                                                                                      ACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCTGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCACACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT]
[+] EMBL BE519434             [                                                                                                                                                                                                                                                                                                                                                                                                                                             GTAGCACATGACGTATGCAATATCCACGAGTCCAGTTAAGCMAGAGTASCGAMCACTCGAGGGTCAACTTGGACCAGTGTYCTCATTTCACTCMATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAATAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCC                                                                                                       ]
[-] EMBL CD193027             [                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT]
[+] EMBL CD157326             [                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAGCTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAGCCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGGAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGACATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGATCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATTAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTG                 ]
[+] EMBL CD093715             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGC                                                                                                                                                                                                                                 ]
[-] EMBL CD135479             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT]




>consensus_9852#0
AGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTT
ATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCG
TAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAA
GTTTAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGAGAGAAT
TTAGGACAGTTTCAGTGTACCAAAATGAGGATCTAAGAAGGAAAGTTATAAATTTAGAAA
TATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGA
AAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGC
GGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTTAGCCAGAGTAGCGA
ACACTCGAGGGTCAACTTCACCAGTGTTCTCATTTACTCCATGCATACGTATTTTAGTGA
CGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCAT
AAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGA
GTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTT
GTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCT
TCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT

consensusID : consensus_9852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [GTGAGACATATATGGGTCAAAAAACGTTATCTTGTTGCTTATCATAAAAAAATCAAAGCACAACAAAAAGACGTAAATCAAACAGCTGGCCTTGTGAATACAAAACTATTAAAGTCTAGATGGAAAACCAGAAAATCGCACAATCCGTAGATGATCCATCTTAAGTTGGTGGATAGCTGCAAAAAGCAATAACTGAAAACAAGATTTTCACCATATAAGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTATAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGATCCTCATTTA]

[+] EMBL CD077131             [GTGAGACATATATGGGTCAAAAAACGTTATCTTGTTGCTTATCATAAAAAAATCAAAGCACAACAAAAAGACGTAAATCAAACAGCTGGCCTTGTGAATACAAAACTATTAAAGTCTAGATGGAAAACCAGAAAATCGCACAATCCGTAGATGATCCATCTTAAGTTGGTGGATAGCTGCAAAAAGCAATAACTGAAAACAAGATTTTCACCATATAAGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTATAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGATCCTCATTTA]




>consensus_9852#1
GTGAGACATATATGGGTCAAAAAACGTTATCTTGTTGCTTATCATAAAAAAATCAAAGCA
CAACAAAAAGACGTAAATCAAACAGCTGGCCTTGTGAATACAAAACTATTAAAGTCTAGA
TGGAAAACCAGAAAATCGCACAATCCGTAGATGATCCATCTTAAGTTGGTGGATAGCTGC
AAAAAGCAATAACTGAAAACAAGATTTTCACCATATAAGAGAAAAGTATAACTTTCATAT
GCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAA
AAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTA
AACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTATAGATACATAAAGACCGCTG
AGGGAAAAACCAATACAGGGGTCTCGATAGATCCTCATTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9852#0      AGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTT 60
consensus_9852#1      ------------------------------------------------------------
                                                                                  

consensus_9852#0      ATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCG 120
consensus_9852#1      ------------------------------------------------------------
                                                                                  

consensus_9852#0      TAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAA 180
consensus_9852#1      ------------------------------------------------------------
                                                                                  

consensus_9852#0      GTTTAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGAGAGAAT 240
consensus_9852#1      ------------------------------------------------------------
                                                                                  

consensus_9852#0      TTAGGACAGTTTCAGTGTACCAAAATGAGGATCTAAGAAGGAAAGTTATAAATTTAGAAA 300
consensus_9852#1      ------------------------------------GTGAGACATATATGGGTCAAAAAA 24
                                                          *   ** *  ***   *  * ***

consensus_9852#0      TATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACA-AACGGACGAAAATGAATCAG 359
consensus_9852#1      CGTTATCTTGTTGCTTATCATAAAAAAATCA---AAGCACAACAAAAAGACGTAAATCAA 81
                        * ***   ***  ****** *  *****    ** ** ***  *   *  * ***** 

consensus_9852#0      AAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTG 419
consensus_9852#1      ACAGCTGGCCTT----GTGAATACAAAACTATTAAAGTCT-AGATGGAAAACCAGAAAAT 136
                      * **  *   **    ***  *    ** * ** ** * * ***** * *          

consensus_9852#0      CGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTC-CAGTTAGCCAGAGTAGC 478
consensus_9852#1      CGCACAATCCGTAG---ATGATCCATCTTAAGTTGGTGGATAGCTGCAAAAAGCAATAAC 193
                      ** ***  * ****   ****   **   *  *    *  *  * *  *     * ** *

consensus_9852#0      GAACACTCGAGGGTCAACTTCACCAGTGTTCTCATTTACTCCATGCATACGTATTTTAGT 538
consensus_9852#1      TGAAAACAAGATTTTCACCATATAAGAGAA---AAGTATAACTTTCATATGCATTGCATA 250
                        * *        *  **   *  ** *     *  **   * * **** * ***  *  

consensus_9852#0      GACGAACCTAAC-CGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAAT 597
consensus_9852#1      AATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGG---------GACACGAAAAA 301
                       *   *   **  * ***      * * **  ** ** **         **  ** *** 

consensus_9852#0      CATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGG 657
consensus_9852#1      AACAAACTGTCTACTCGTATAAAAAT---ATTGCAACCGTAGTTATCCAACAATACAGAT 358
                       * ***     *  **  *   *  *    * * * *   * * ****      *     

consensus_9852#0      TGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCT 717
consensus_9852#1      TAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTATAGATACATAAAGACCGC 418
                      * *   *  ** ***   ** * * ***   ***    *   **  * * * *   **  

consensus_9852#0      TTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTC 777
consensus_9852#1      T------------GAGGGAAAAACCAATACAGGGGTCTCGATAGATCCTCATTTA----- 461
                      *             **   *  *  ** * *    * ***    *  *  * **      

consensus_9852#0      CCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT 818
consensus_9852#1      -----------------------------------------