These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 801 fasta sequence [AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC-TGGTGGAAATCGCTCTCAGACATGAACCCCTCGGACGAATCTGGCGC] [-] EMBL CD180749 [AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATT ] [+] EMBL CD124250 [ CATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTANGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCCAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTG ] [-] EMBL CD124208 [ TGGTTCA TTTCAATTGGACCACGTTCATACATGTAT AAGAAGCAATAGCTAGTAATTTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGA ] [-] EMBL CD093006 [ CAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC TGGTGGA ] [-] EMBL CD134548 [ TGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGT ] [-] EMBL CD093016 [ atgcCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC TGGTGGA ] [-] EMBL CD124211 [ CTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTCGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGA ] [-] EMBL CD078151 [ AATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCCCTCGGACGAATCTGGCGC] consensusID : consensus_9853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 556 fasta sequence [AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGAGAGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCATGCAACAAATCACAAGAGTAAA] [-] EMBL CD114951 [AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAGTTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTA ] [+] EMBL CD111285 [ AACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATGCAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCAGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTT ] [-] EMBL CD110847 [ ACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGAGAGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCATGCAACAAATCACAAGAGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9853#0 AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTT 60 consensus_9853#1 ------------------------------------------------------------ consensus_9853#0 GACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGG 120 consensus_9853#1 ------------------------------------------------------------ consensus_9853#0 ACCACGT-TCATACA--TGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAA 177 consensus_9853#1 AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTAT-ACTGTCCATCGTATA 59 * *** * ** * ** **** * ** ** * * ** * ** * * * consensus_9853#0 TGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAA 237 consensus_9853#1 TACTGTACTAGGTTGACGA--TGAACACTTTG-TGCTCCA------CCTTTTGAATCAGT 110 * ** ***** * ** * ** * ****** * * * * *** ** * consensus_9853#0 TCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTG 297 consensus_9853#1 TGCATTGGATGATGCTACAGAAGCA---CGTGGGTCCCAAATACGTACAGTACAATCCCA 167 * *** ** **** * ** * * * * * * * * * consensus_9853#0 ATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATG 357 consensus_9853#1 ACTACCTGTGATACAAGC--CTGGAT--ATTTGAATTGTAATGCATCGTGCTAATCGCTC 223 * * * ** * ****** *** * ** ** * * * ** * consensus_9853#0 GCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGC 417 consensus_9853#1 TCAGACATGAACCTAAAGTTTGATTCTGACT--AGTGTTGCAGTCGAACAATTT--TAAT 279 ** * * * ** *** ** ** * * * ** **** ** * consensus_9853#0 TATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACA 477 consensus_9853#1 TCTCCA----TCTAGTGAACCG-----------CTGACGACGTGTACAGTATCAGAAAAA 324 * *** ** * ****** ** * * ** * * ** * * * consensus_9853#0 TCGAGTTTGGTATCTGAGACTTGATT--CACGTTGTTCTAAAGGTGCATGCATTTGACGG 535 consensus_9853#1 GCG------GTATCTAAAACGGGAGTACTATGTTGGTA-AAACAAACGTTGACTTCCTGA 377 ** ****** * ** ** * * **** * *** * * * ** * consensus_9853#0 AGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTG 595 consensus_9853#1 AGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAG------GAATTG 431 ** * ** * * *** *** * ** ** * * * * ** consensus_9853#0 TCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCA 655 consensus_9853#1 -----CGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGA 486 ** * * ** * * ****** * ***** * * *** * *** * consensus_9853#0 GTTGCATTGGATGATGC-TACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCA 714 consensus_9853#1 G------AGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCA--TGCA 538 * **** ** *** ** *** ** ** * ** * ** ** consensus_9853#0 ACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCTGGTGGAAATCGCTCTCAGA 774 consensus_9853#1 ACAAATCACAAGAGTAAA------------------------------------------ 556 ** * * * * consensus_9853#0 CATGAACCCCTCGGACGAATCTGGCGC 801 consensus_9853#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||