These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 708 fasta sequence [TGAGGAAGGACCTGAGGGATTGGTTGGTCCAGAAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATAGCAGGAGAAAAAGGAGACCAAGGATCACAAGGTCCTATAGGTCGACGCGGTTTACCCGGAACAGTTGGAGTCCCTGGCCCGGCTGGCCAACCTGGAAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGCGAAAGAGGGACTCAGGGAGAAGATGGACCACCAGGACCTCGAGGTGTTGAAGGAAGTCCTGGAGTACAGGGACCACTAGGACCAAAAGGTCAAGAAGGTCCTCGCGGTCCACAAGGAGTACCTGGTGATATAGGGACCCCAGGACCTGATGGACCAAAAGGAGAGTTGGGTCCTTTAGGAATACCTGGACCTCAAGGACCAACAGGACCTCCTGGACCAAAAGGTGTTCAAGGATCAGTTGGAGAGGATGGGCCTCCCGGACCACAAGGTCCTCTTGGAAAACAAGGTTTGAGAGGTCTACCTGGACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTCAGGGTCCCAAAGGTATGAAAGGCGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGACGCACTGNGCCTGTAGGATCCNCTGGACCCNCGGGATCTTTGGCAGTCCT] [+] EMBL CD068908 [TGAGGAAGGACCTGAGGGATTGGTTGGTCCAGAAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATAGCAGGAGAAAAAGGAGACCAAGGATCACAAGGTCCTATAGGTCGACGCGGTTTACCCGGAACAGTTGGAGTCCCTGGCCCGGCTGGCCAACCTGGAAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGCG ] [+] EMBL CD068899 [ GAGGAAGGACCTGAGGGATTGGTTGGTCCAGAAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATAGCAGGAGAAAAAGGAGACCAAGGATCACAAGGTCCTATAGGTCGACGCGGTTTACCCGGAACAGTTGGAGTCCCTGGCCCGGCTGGCCAACCTGGAAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGC ] [+] EMBL AI977355 [ TGGCCCGGCTGGCCAACCTGGAAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGCGAAAGAGGGACTCAGGGAGAAGATGGACCACCAGGACCTCGAGGTGTTGAAGGAAGTCCTGGAGTACAGGGACCACTAGGACCAAAAGGTCAAGAAGGTCCTCGCGGTCCACAAGGAGTACCTGGTGATATAGGGACCCCAGGACCTGATGGACCAAAAGGAGAGTTGGGTCCTTTAGGAATACCTGGACCTCAAGGACCAACAGGACCTCCTGGACCAAAAGGTGTTCAAGGATCAGTTGGAGAGGATGGGCCTCCCGGACCACAAGGTCCTCTTGGAAAACAAGGTTTGAGAGGTCTACCTGGACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTCAGGGTCCCAAAGGTATGAAAGGCGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGACGCACTGNGCCTGTAGGATCCNCTGGACCCNCGGGATCTTTGGCAGTCCT] consensusID : consensus_9856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 671 fasta sequence [GACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTCAGGGTCCCAAAGGTATGAAAGGCGAAACAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATCAGCGAACAAGCATATGTACAAACTTCACCTGGTCGATGCCGTCAAGATTCAAATGATTTGGCAACATCATCAAATGTTGCAGAAAGAAATGTAGCTTATTCTGTTCCTCGTGGATTANATCTTTACATAGAAGGTCGGTCTTTAATCCCTGATTCATTTCCTCCAGATCTGTCTATTTTATTTACCATTCGATTGGAATTTAATTTTGGAAAAAGAGTTTTTCACTCTATATGATCGACATGGACGAATGATTTTACGCATAATAATTGGCTCACATTTGCAATTAGAATATTTATCAAGAGAATCACAATCTAGTCAGCTTTTTGATGTGCATCCTCGAGATTTAAAAACACAGTCAGGAAAAACATTAGAGAAAGCTATTTTTAAAACTCGTCTAAATGATGGCCTATGGCATCGTGTGGCTGTCAGTATTGGTACTACTACCGCAAGATTACTGGTTGATCTGCACACAGAGAGAGTTCATAAATTATAATAATAAATAAGCAAGTATTG] [+] EMBL CD144401 [GACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTCAGGGTCCCAAAGGTATGAAAGGCGAAACAGGATCTAGAGGATTGCCAGGAGCACCAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATCAGCGAACAAGCATATGTACAAACTTCACCTGGTCGATGCCGTCAAGATTCAAATGATTTGGCAACATCATCAAATGTTGCAGAAAGAAATGTAGCTTATTCTGTTCCTCGTGGATTANATCTTTACATAGAAGGTCGGTCTTTAATCCCTGATTCATTTCCTCCAGATCTGTCTATTTTATTTACCATTCGATTGGAATTTAATTTTGGAAA ] [+] EMBL CD144952 [ TAGCTTACTCTGTTCCTCGTGGATTAAATCTTTACATAGAAGGTCGGTCTTTAATCCCTGATTCATTTCCTCCAGATCTGTCTATTTTATTTACCATTCGATTGGAA TTAAATTTGGAAAAAGAGTTTTTCACTCTATATGATCGACATGGACGAATGATTTTACGCATAATAATTGGCTCACATTTGCAATTAGAATATTTATCAAGAGAATCACAATCTAGTCAGCTTTTTGATGTGCATCCTCGAGATTTAAAAACACAGTCAGGAAAAACATTAGAGAAAGCTATTTTTAAAACTCGTCTAAATGATGGCCTATGGCATCGTGTGGCTGTCAGTATTGGTACTACTACCG ] [-] EMBL CD060060 [ AATGATTTTAGGCATAATAATTGGCTCACATTTGCAATTAGAATATTTATCAAGAGAATCACTATCTAGTCAGCTTTTTGATGTGCATCCTCGAGATTTAAAAACGCAGTCAGTATAAACATTAGAGAAAGCTATTTTTAAAACTCGTCTAAATGATGGCATATGGCATCGTGTGACTGTCAGTATTGGTAATAGTACAGCAAGATTACTGGTTGATCTGCACACAGAGAGAGTTCATAAATTATAATAATAAATAAGCAAGTATTG] consensusID : consensus_9856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 566 fasta sequence [CTCGCAGGCCAAGATTCGTCACGAGGGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGACGCACTGGGCCTGTAGGATCCCCTGGACCCCCGGGATCTTTGGGCAGTCCTGGCCAGCAAGGTGTACCAGGGGTAATGGGTAAACAAGGAAAGACAGGAGAACGAGGATCAGAAGGACTGCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGACCGTGGTCCGAAAGGTAGCAAAGGAACTTATGGTCCAGTCGGTCCTTTGGGGCCTCCTGGACCAAAGGGTGAACAAGGTGTTCCTGGACTTGAGGGCGCACGAGGTGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTGTCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGGACCAATCGGTCCTGAAGGTCCAGCTGGACATCCTGGTCCACCAGGATTACCTGGTGTTCCAGGTCAAAAGGGTTCATCTGGTCCAGCAGGACCACCCGGACCTCCGGGTCCAATCAAGGTCTTAGATATGAGTGAAGGTTATTATAGGTTTGAGGATACACCCAGAGTTAGA] [+] EMBL CD078188 [CTCGCAGGCCAAGATTCGTCACGAGGGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGACGCACTGGGCCTGTAGGATCCCCTGGACCCCCGGGATCTTTGGGCAGTCCTGGCCAGCAAGGTGTACCAGGGGTAATGGGTAAACAAGGAAAGACAGGAGAACGAGGATCAGAAGGACTGCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGACCGTGGTCCGAAAGGTAGCAAAGGAACTTATGGTCCAGTCGGTCCTTTGGGGCCTCCTGGACCAAAGGGTGAACAAGGTGTTCCTGGACTTGAGGGCGCACGAGGTGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTGTCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGG ] [+] EMBL CD071708 [ TCCCCTGGACCCCCGGGATCTTTGGGCAGTCCTGGCCAGCAAGGTGTACCAGGGGTAATGGGTAAACAAGGAAAGACAGGAGAACGAGGATCAGAAGGACTGCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGACCGTGGTCCGA ] [+] EMBL SMT14493 [ gaAAGGNCTGCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGACCGTGGTCCGAAAGGTAGCAAAGGAACTTATGGTCCAGTCGGTCCTTTGGGGCCTCCTGGACCAAAGGGTGAACAAGGTGTTCCTGGACTTGAGGGCGCACGAGGTGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTGTCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGGACCAATCGGTCCTGAAGGTCCAGCTGGACATCCTGGTCCACCAGGATTACCTGGTGTTCCAGGTCAAAAGGGTTCATCTGG ] [-] EMBL CD072015 [ CTCCTGGACCAAAGGGTGAACAAGGTGTTCCTGGACTAGAGGGCGCACGAGGTGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTGTCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGGACCAATCGGTCATGAAGGCCCAGCTGGACATCCAGGTCCACCAGGATTACCTGGTGTTCCAGGTCAAAAGGGTTCATCTGGTCCAGCAGGACCACCCGGACCTCCGGGTCCAATCAAGGTCTTAGATATGAGTGAAGGTTATTATAGGTTTGAGGATACACCCAGAGTTAGA] consensusID : consensus_9856#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TAAATCTCGAGGATGCACATCAAAAAGCTGACTAGATTGTGATTCTCTTGATAAATATTCTAATTGCAAATGTGAGCCAATTATTATGCGTAAAATCATTCGTCCATGTCGATCATATAGAGTGAAAAACTCTTTTTCCAAATTTAATTCCAATCGAATGGTAAATAAAATAGACAGATCTGGAGGAAATGAATCAGGGATTAAGGACCGACCTTCTATGTAAAGATTTAATCCACGAGGAACAGAATAAGCTACATTTCTTTCTGCAACATTTGATGATGTTGCCAAATCATTTGAATCTTGACGGCATCGACCAGGTGAAGTTTGTACATATGCTTGTTCGCTGATTCTTACTGCCGTTAATACGTCTAATGTACCCTGAGGTGCTGTTTGTAATCTCTCTAAAAAGCCATTGACAGGAGTGTTAGATAGTAGAATAATCCACACAAAACTAGTTAAATATACTTGAAATTGATTGTTCATAGTCCAATGATACAGATACATATTA] [+] EMBL CD133048 [TAAATCTCGAGGATGCACATCAAAAAGCTGACTAGATTGTGATTCTCTTGATAAATATTCTAATTGCAAATGTGAGCCAATTATTATGCGTAAAATCATTCGTCCATGTCGATCATATAGAGTGAAAAACTCTTTTTCCAAATTTAATTCCAATCGAATGGTAAATAAAATAGACAGATCTGGAGGAAATGAATCAGGGATTAAGGACCGACCTTCTATGTAAAGATTTAATCCACGAGGAACAGAATAAGCTACATTTCTTTCTGCAACATTTGATGATGTTGCCAAATCATTTGAATCTTGACGGCATCGACCAGGTGAAGTTTGTACATATGCTTGTTCGCTGATTCTTACTGCCGTTAATACGTCTAATGTACCCTGAGGTGCTGTTTGTAATCTCTCTAAAAAGCCATTGACAGGAGTGTTAGATAGTAGAATAATCCACACAAAACTAGTTAAATATACTTGAAATTGATTGTTCATAGTCCAATGATACAGATACATATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9856#0 -TGAGGAAGGACCTGAGGGATTGGTTGGTCCAGAAGGATCTAGAGGATTGCCAGGAGCAC 59 consensus_9856#1 GACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAGGACGTACTGGACCTC 60 consensus_9856#2 ---------------------------------------------------------CTC 3 consensus_9856#3 ------------------------------------------------------------ consensus_9856#0 CAGGTGCACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATAGCAGGAGAAAAAGGAG 119 consensus_9856#1 AGGGTCCCAAAGGTATGAAAGGCGAAACAGGATCTAGAGGATTGCCAGGAGCACCAGGTG 120 consensus_9856#2 GCAGGCCAAGATTCGTCACGAGGGAAACAGGTGAACAAGGAGTACCTGGTGAACCAGGAC 63 consensus_9856#3 -------------------------------------------------TAAATCTCGAG 11 * * consensus_9856#0 ACCAAGGATCACAAGGTCCTATAGGTCGACGCGGTTTACCCGGAACAGTTGGAGTCCCTG 179 consensus_9856#1 CACCTGGAATGGTAGGTGTCACAGGTCTACCAGGAATCAGCGAACAAGCATATGTACAAA 180 consensus_9856#2 GCACTGGGCCTGTAGGATCCCCTGGACC-CCCGGGATCTTTGGGCAGTCCTGGCCAGCAA 122 consensus_9856#3 GATGCACATCAAAAAGC-TGACTAGATTGTGATTCTCTTGATAAATATTCTAATTGCAAA 70 * * * consensus_9856#0 GCCCGGCTGGCCAACCTGG--AAGTGTTGGCGTACCTGGTCCTGTCGGGCAACAGGGCGA 237 consensus_9856#1 CTTCACCTGGTCGATGCCGTCAAGATTCAAATGATTTGGCAACATCA--TCAAATGTTGC 238 consensus_9856#2 GGTGTACCAGGGGTAATGGGTAAACAAGGAAAGACAGGAGAACGAGGA-TCAGAAGGACT 181 consensus_9856#3 TGTGAGCCAATTATTAT------GCGTAAAATCATTCGTCCATGTCGA-TCATATAGAGT 123 * * * * * consensus_9856#0 AAGAGGGACTCAGGGAGAAGATGGACCACCAGGACC---TCGAGGTGTTGAAGGAAGTCC 294 consensus_9856#1 AGAAAGAAATGTAGCTTATTCTGTTCCTCGTGGATTANATCTTTACATAGAAGGTCGGTC 298 consensus_9856#2 GCAGGGCAAGCAAGGTGACCCTGGTATACCAGGTGA---CCGTGGTCCGAAAGGTAGCAA 238 consensus_9856#3 GAAAAACTCTTTTTCCAAATTTAATTCCAATCGAAT---GGTAAATAAAATAGACAGATC 180 * * * ** * consensus_9856#0 TGGAGTACAGGGACCACTAGGACCAAAAG-GTCAAGAAGGTCCTCG--CGGTCCACAAGG 351 consensus_9856#1 TTTAATCCCTGATTCATTTCCTCCAGATCTGTCTATTTTATTTAC---CATTCGATTGGA 355 consensus_9856#2 AGGAACTTATGGTCCAGTCGGTCCTTTGGGGCCTCCTGGACCAAA---GGGTGAACAAGG 295 consensus_9856#3 TGGAGGAAATGAATCAGGGATTAAGGACCGACCTTCTATGTAAAGATTTAATCCACGAGG 240 * * ** * * * * consensus_9856#0 AGTACCTGGTGATATAGGGACCCCAGGACCTG-ATGGACCAAAAGGAGAGTTGGGTCCTT 410 consensus_9856#1 ATTTAATTTTGGAAAAAGAGTTTTTCACTCTATATGATCGACATGGACGAATGATTTTAC 415 consensus_9856#2 TGTTCCTGGACTTGAGGGCGCACGAGG-TGTGGTCGGCCTTAAAGGAGAAAGGGGTCCTG 354 consensus_9856#3 AACAGAATAAGCTACAT-TTCTTTCTGCAACATTTGAT-GATGTTGCCAAATCATTTGAA 298 * * * consensus_9856#0 TAGGAATACCTGGACCTCAAGGACCAACAGGACCTCCTGG-ACCAAAAGGTGTTCAAG-- 467 consensus_9856#1 GCATAATAATTGGCTCACATTTGCAATTAGAATATTT----ATCAAGAGAATCACAATCT 471 consensus_9856#2 TCGGACCTGCTGGAGACCCAGGGCAACCAGGTCCATCTGG-ACCAATCGGTCCTGAAG-- 411 consensus_9856#3 TCTTGACGGC-ATCGACCAGGTGAAGTTTGTACATATGCTTGTTCGCTGATTCTTACTGC 357 * * * * consensus_9856#0 GATCAGTTGGAGAGGATGGGCCTCCCGGACCACAAGGTCCTCTTGGAAAACAAGGTTTGA 527 consensus_9856#1 AGTCAGCTTTTTGATGTGCATCCTCGAGATTTAAAAACACAGTCAGGAAA-AACATTAGA 530 consensus_9856#2 GTCCAGCTGGACATCCTGGTCCACCAGGATTACCTGGTGTTCC---------AGGTCAAA 462 consensus_9856#3 CGTTAATACGTCTA-ATGTACCCTGAGGTGCTGTTTGTAATCTCTCTAAA--AAGCCATT 414 * ** * * * consensus_9856#0 GAGGTCTACCTGGACCTCTAGGACCACCCGGACCTCCTGGTATGACCGGTCCCCAAG-GA 586 consensus_9856#1 GAAAGCTATTTTTAAAACTCGTCTAAATGATGGCCTATGGCATCGTGTGGCTGTCAG-TA 589 consensus_9856#2 AGGGTTCATCTGGTCCAGCAGGACCACCCGGACCTCCGGGTCCAATCAAGGTCTTAGATA 522 consensus_9856#3 GACAGGAGTGTTAGATAGTAGAATAATCCA---CACAAAACTAGTTAAATATACTTGAAA 471 * * * * * * consensus_9856#0 C--GTACTGG--ACCTCAGGGTCCCAAAGGTATGAA-AGGCGAAACAGGTGAACAAGGAG 641 consensus_9856#1 TTGGTACTACT-ACCGCAAGATTACTGGTTGATCTGCACACAGAGAGAGTTCATAAATTA 648 consensus_9856#2 TGAGTGAAGGTTATTATAGGTTTGAGGATACACCCAGAGTTAGA---------------- 566 consensus_9856#3 TTGATTGTTCATAGTCCAATGATACAGATACATATTA----------------------- 508 * * * * consensus_9856#0 TACCTGGTGAACCAGGACGCACTGNGCCTGTAGGATCCNCTGGACCCNCGGGATCTTTGG 701 consensus_9856#1 TAA-TAATAAATAAGCAAGTATTG------------------------------------ 671 consensus_9856#2 ------------------------------------------------------------ consensus_9856#3 ------------------------------------------------------------ consensus_9856#0 CAGTCCT 708 consensus_9856#1 ------- consensus_9856#2 ------- consensus_9856#3 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||