These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 929 fasta sequence [ATTTATTAATTTTATGTTATACAGTGAAATAAAGAGATTTATTAAAACAATTTAAAGTAATTGAATTATCTGTAGCCTGCCTACTACTACTGATACTAAAATGAGTGTGAAAGGATTTTTTAAAAGTGTATTAAATTCTGGAG-AACAAGAAGAAGAAACTGGAACCACCGGGGCCACATCAACAACAACTTCATTGTCTGGTTCAGCTACAGCTGGAGTAAATAATTTCCTATCTGGTACATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTT-GTCGAATAAACTAACGTCATTCAAAATGCCTGGCG-AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT-GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA-GAACGTCAAGTATCAGTTGAAAGTATAGACAG-TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAA-TGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATNTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTANCACGTGAACGGGCTGAGCGTCAAAAT] [+] EMBL CD133832 [ATTTATTAATTTTATGTTATACAGTGAAATAAAGAGATTTATTAAAACAATTTAAAGTAATTGAATTATCTGTAGCCTGCCTACTACTACTGATACTAAAATGAGTGTGAAAGGATTTTTTAAAAGTGTATTAAATTCTGGAG AACAAGAAGAAGAAACTGGAACCACCGGGGCCACATCAACAACAACTTCATTGTCTGGTTCAGCTACAGCTGGAGTAAATGATTTCCTATCTGGTACATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTT GTCGAATAAACTAACGTCATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAACTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTANATCGGANATTCGTGCCTTAGTCTCTAATTTACTTCAACANAGC ] [+] EMBL SM853 [ TAATTGAATTATCTGTAGCCTGCCTACTACTACTGATATTAAAATGAGTGTGAAAGGATTTTTTAAAAGTGTATNAAATTCTGGAGNAACAAGAAGAAGAAACTGGAACCACCGGGGCCACATCAACAACAACTTCATTGTCTGGTTCAGCTACAGCTGGAGTAAATAATTTCCTATCTGGTACATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTTGGTCGAATAAACTAACGTCATTCAAAATGCCTGGCGAAACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGNTCTGCCAGTGGAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTAGGAACGTCAAGTATCAGTTGGAAGTATAGACAG GNTGGCAGATGAAGATGCTGANCGACGTTAA ] [+] EMBL CD113736 [ TTCAGCTACCGGTGGAATAAATAATTTCCTATCTGGTACATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTT GTCGAATAAACTAACGTCATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAGTTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCAT ] [+] EMBL CD080079 [ CTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTT GTCGAATAAACTAACGTCATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAA TGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGC AAAATATCTTTATGTATTATTGAAAGATCAAGTGATNTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTANCACGTGAACGGGCTGAGCGTCAAAAT] [+] EMBL CD063315 [ CGTTATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAA ] [+] EMBL CD063520 [ CGTCATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAA ] [+] EMBL CD063473 [ CGTTTTTCAAAATGCCTGGCG AGCAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGCTGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAA ] [+] EMBL CD153708 [ gcttccTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAA TGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATtt ] [+] EMBL CD197773 [ CCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAA TGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGGAAGATC ] [+] EMBL AF155775 [ CGTCCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAATTGAAGATTATTCTCCANCTTATATCATTATGCATTTAAGNTTCTCATTATATCATGAAACTGTCTCCTCAAA ] consensusID : consensus_9861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [AGTAGAACGTCAAGTATCAGTTGAAAGTATAGACAGTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATGCGTTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCA] [-] EMBL CD197865 [AGTAGAACGTCAAGTATCAGTTGAAAGTATAGACAGTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATGCGTTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCA] consensusID : consensus_9861#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [CGTCACGTGGGTTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAATGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCATTGAAGGTGA] [+] EMBL CD077909 [CGTCACGTGGGTTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAATGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCATTGAAGGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9861#0 ATTTATTAATTTTATGTTATACAGTGAAATAAAGAGATTTATTAAAACAATTTAAAGTAA 60 consensus_9861#1 ------------------------------------------------------------ consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 TTGAATTATCTGTAGCCTGCCTACTACTACTGATACTAAAATGAGTGTGAAAGGATTTTT 120 consensus_9861#1 ------------------------------------------------------------ consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 TAAAAGTGTATTAAATTCTGGAGAACAAGAAGAAGAAACTGGAACCACCGGGGCCACATC 180 consensus_9861#1 ------------------------------------------------------------ consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 AACAACAACTTCATTGTCTGGTTCAGCTACAGCTGGAGTAAATAATTTCCTATCTGGTAC 240 consensus_9861#1 ------------------------------------------------------------ consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 ATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTTGTCGAA 300 consensus_9861#1 ------------------------------------------------------------ consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 TAAACTAACGTCATTCAAAATGCCTGGCGAACAGTCGACCAATGAGAGTGAAAAGAAAAA 360 consensus_9861#1 ------------------------------------------------------------ consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 GAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGTGAATATGGAGATGATGGTGA 420 consensus_9861#1 ------------------------------------------------------------ consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 TCGTCCAATGTATGCAGAAGTAGCTCCAGTAGAACGTCAAGTATCAGTTGAAAGTATAGA 480 consensus_9861#1 ---------------------------AGTAGAACGTCAAGTATCAGTTGAAAGTATAGA 33 consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 CAGTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAA 540 consensus_9861#1 CAGTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAA 93 consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 TTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGT 600 consensus_9861#1 TTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGT 153 consensus_9861#2 ------------------------------------------------------------ consensus_9861#0 GAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAA 660 consensus_9861#1 GAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAA 213 consensus_9861#2 -----------------------------CGTCACGTGGGTTACAAACAAAGGGCATGAA 31 * ** ******************** consensus_9861#0 ATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCA 720 consensus_9861#1 ATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTAT------- 266 consensus_9861#2 ATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCA 91 ***************************************************** consensus_9861#0 ATGTAATGAAAATGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATT 780 consensus_9861#1 ------------------------------------------GCGTTTAAGTTTCTCATT 284 consensus_9861#2 ATGTAATGAAAATGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATT 151 ** *************** consensus_9861#0 ATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATT 840 consensus_9861#1 ATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATT 344 consensus_9861#2 ATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATT 211 ************************************************************ consensus_9861#0 GAAAGATCAAGTGATNTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTT 900 consensus_9861#1 GAAAGATCAAGTGATTT-GGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTT 403 consensus_9861#2 GAAAGATCAAGTGATTT-GGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTT 270 *************** * ****************************************** consensus_9861#0 TANCACGTGAACGGGCTGAGCGTCAAAAT-------------------- 929 consensus_9861#1 TACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCA---------- 442 consensus_9861#2 TACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCATTGAAGGTGA 319 ** *********************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||