cluster # 9862

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Schistosoma mansoni
cluster # 9862 cluster # 9862 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9862#0 length = 711 sequences # 4
consensus_9862#1 length = 664 sequences # 5

consensus_9862#2 length = 652 sequences # 1
consensus_9862#3 length = 636 sequences # 2

consensusID : consensus_9862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 711
fasta sequence

                              [ATGATTCTACTTAGTTGAAAACTACCTAATGCAACCAAGCTGATTTATATATTGTTAATTCTCAGGAATATTCAAATGTATAATGCCTTTCGCATCATTCAAGAATATCCAAAAACGACTCTCCAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGACACCATCTTGGTATACTACCGAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAAAGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATT-CCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTTACAGGAATTATCTGAACATCTAGAAAGAGCCANACAGTTGAAATATCTTTTACG]

[+] EMBL CD140174             [ATGATTCTACTTAGTTGAAAACTACCTAATGCAACCAAGCTGATTTATATATTGTTAATTCTCAGGAATATTCAAATGTATAATGCCTTTCGCATCATTCAAGAATATCCAAAAACGACTCTCCAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGACACCATCTTGGTATACTACCGAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAAAGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACAT                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD078623             [                                                                                                       AATATCCAAAAACGACTCTCCAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGACACCATCTTGGTATACTACCGAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAAAGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATT CCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTTACAGGAATTATCTGAACATCTAGAAAGAGCCANACAGTTGAAATATCTTTTACG]
[+] EMBL CD130721             [                                                                                                                     ACTCTCTAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGACCCCATCTTGGTATACTACCGAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAAAGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCCTGC AAGTGAATCACAGAA                                                                                                                                                                                                                                    ]
[+] EMBL CD180138             [                                                                                                                                 CCACAAAGAACGTTCCCAACCTCAATGTAGACACCATCTTGGTATACTACCGAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAAAGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAG                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_9862#0
ATGATTCTACTTAGTTGAAAACTACCTAATGCAACCAAGCTGATTTATATATTGTTAATT
CTCAGGAATATTCAAATGTATAATGCCTTTCGCATCATTCAAGAATATCCAAAAACGACT
CTCCAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGACACCATCTTGGTATACTACC
GAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAA
AGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAA
TTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGA
TTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAA
AGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACA
GAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAAT
AGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGA
AGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTTACA
GGAATTATCTGAACATCTAGAAAGAGCCANACAGTTGAAATATCTTTTACG

consensusID : consensus_9862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 664
fasta sequence

                              [TCGGTACGAGGGCATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACAAGGAATTATCTGAACATCTAGAAAGAGCCAAACAGTTGAAATATCTTTTACGTCAGCATGAGGCTAAGAAAAGTCTTATGGCAAATTTAACCAAAAGAGCGTACAAAACAGTTTTCAAAGGAAATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTTAGTTATCTAATTTGTGCATTTCATTGTGCTTGATATATGTCCAGGAACATCTAAAAAAGTTTTTC]

[+] EMBL CD081988             [TCGGTACGAGGGCATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACAAGGAATTATCTGAACATCTAGAAAGAGCCAAACAGTTGAAATATCTTTTACGTCAGCATGAGGCTAAGAAAAGTCTTATGGCAAATTTAACCAAAAGAGCGTACAAAACAGTTTTCAAAGGAAATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTTAGTTATCTAATTTGTGCATTTCATTGTGCTTGATATATGTCCAGGAACATCTAAAAAAGTTTT  ]
[-] EMBL CD076849             [                                                                                 CCATTAGATGTGGAAAANAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACAAGGAATTATCTGAACATCTAGAAAGAGCCAAACAGTTGAAATATCTTTTACGTCAGCATGAGGCTAAGAAAAGTCTTATGGCAAATTTAACCAAAAGAGCGTACAAAACAGTTTTCAAAGGAAATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTTAGTTATCTAATTTGTGCATTTCATTGTGCTTGATATATGTCCAGGAACATCTAAAAAAG      ]
[-] EMBL CD075603             [                                                                                                                                                    ACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCCCAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTTTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACAAGGAATTATTTGAACATTTAGAAAGAGCCAAACAGTTGAAATATTTTTTACGTCAGCATGAGGGTAAGAAAAGTTTTATGGCAAATTTAACCAAAAGAGCGTACAAAACAGTTTTCAAAGGAAATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTTAGTTATTTAATTTGTGCATTTCATTGTGCTTGATATATGTCCAGGAACATTTAAAAAAGTTTTT ]
[-] EMBL CD073086             [                                                                                                                                                             ACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTTTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACAAGGAATTATTTGAACATTTAGAAAGAGCCAAACAGTTGAAATATTTTTTACGTCAGCATGAGGCTAAGAAAAGTTTTATGGCAAATTTAACCAAAAGAGCGTACAAAACAGTTTTCAAAGGAAATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTTAGTTATTTAATTTGTGCATTTCATTGTGCTTGATATATGTCCAGGAACATTTAAAAAAGTTTTTC]
[-] EMBL CD133458             [                                                                                                                                                                                         ACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCTAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACAAGGAATTATCTGAACATCTAGAAAGAGCCAAACAGCTGAAATATCTTTTACGTCAGCATGAGGCTAAGAAAAGTCTTATGGCAAATTTAACCAAAAGAGCGTACAAAACAGTTTTCAAAGGAAATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTTAGTTATCTAATTTGTGCATTTCATTGTGCTT                                  ]




>consensus_9862#1
TCGGTACGAGGGCATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTT
GATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATC
AAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCC
AAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGT
TCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTA
AATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCC
AGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACAAGGAATTATCT
GAACATCTAGAAAGAGCCAAACAGTTGAAATATCTTTTACGTCAGCATGAGGCTAAGAAA
AGTCTTATGGCAAATTTAACCAAAAGAGCGTACAAAACAGTTTTCAAAGGAAATAAGACA
GCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTTA
GTTATCTAATTTGTGCATTTCATTGTGCTTGATATATGTCCAGGAACATCTAAAAAAGTT
TTTC

consensusID : consensus_9862#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence

                              [TTATTTATCCATGTTTGGGACTAGTAGTTATCCTAGAAGGGTGTTGTCCGGAATTATACCGTCCTTTGATAGATAGATGGACAGAATCCATGCAGTAACGGGTAAAATAATGTGAAGGCAAAAGTATTCCTTAAGGTAATACAATTAAGAACCACTAAAAACGAACTAAAACAAAAATCCACAGATTGCTTTTCACGTCATCATAAGTACTACTAACGTTACTGATTTTCGGTCTGTTATATTACAAACACCAACGACCGATACTCCATGTCTCTACTCAATTAAAAAGAACAAAATAAGGCCTCATAAGACAATGTCATATTTATCTAGCCGTCTCGTTATTTTACTTCACTTTGGAATAAACTGTTATGATAAGCTTATGTTTCAGTGTACCTAAATTCATGTGTAAAACACTGATATGGTGGGTCGAGCCGAATTCAAAGTACTTTTTTTCTATGAAAGTAAATATTCCTTTTATCGTACCTTACCATCTGAAGTGTAATTTATTTTCCACTAGGCANATTTAACCAAAAGAGCGTACAAAACAGTTTTCANAGGANATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTAGNTATCTAATTNGNGCATTTCATTG]

[+] EMBL CD116090             [TTATTTATCCATGTTTGGGACTAGTAGTTATCCTAGAAGGGTGTTGTCCGGAATTATACCGTCCTTTGATAGATAGATGGACAGAATCCATGCAGTAACGGGTAAAATAATGTGAAGGCAAAAGTATTCCTTAAGGTAATACAATTAAGAACCACTAAAAACGAACTAAAACAAAAATCCACAGATTGCTTTTCACGTCATCATAAGTACTACTAACGTTACTGATTTTCGGTCTGTTATATTACAAACACCAACGACCGATACTCCATGTCTCTACTCAATTAAAAAGAACAAAATAAGGCCTCATAAGACAATGTCATATTTATCTAGCCGTCTCGTTATTTTACTTCACTTTGGAATAAACTGTTATGATAAGCTTATGTTTCAGTGTACCTAAATTCATGTGTAAAACACTGATATGGTGGGTCGAGCCGAATTCAAAGTACTTTTTTTCTATGAAAGTAAATATTCCTTTTATCGTACCTTACCATCTGAAGTGTAATTTATTTTCCACTAGGCANATTTAACCAAAAGAGCGTACAAAACAGTTTTCANAGGANATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCGGGATCGATGAACACTTGGATTTTGTTAGNTATCTAATTNGNGCATTTCATTG]




>consensus_9862#2
TTATTTATCCATGTTTGGGACTAGTAGTTATCCTAGAAGGGTGTTGTCCGGAATTATACC
GTCCTTTGATAGATAGATGGACAGAATCCATGCAGTAACGGGTAAAATAATGTGAAGGCA
AAAGTATTCCTTAAGGTAATACAATTAAGAACCACTAAAAACGAACTAAAACAAAAATCC
ACAGATTGCTTTTCACGTCATCATAAGTACTACTAACGTTACTGATTTTCGGTCTGTTAT
ATTACAAACACCAACGACCGATACTCCATGTCTCTACTCAATTAAAAAGAACAAAATAAG
GCCTCATAAGACAATGTCATATTTATCTAGCCGTCTCGTTATTTTACTTCACTTTGGAAT
AAACTGTTATGATAAGCTTATGTTTCAGTGTACCTAAATTCATGTGTAAAACACTGATAT
GGTGGGTCGAGCCGAATTCAAAGTACTTTTTTTCTATGAAAGTAAATATTCCTTTTATCG
TACCTTACCATCTGAAGTGTAATTTATTTTCCACTAGGCANATTTAACCAAAAGAGCGTA
CAAAACAGTTTTCANAGGANATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGTCCG
GGATCGATGAACACTTGGATTTTGTTAGNTATCTAATTNGNGCATTTCATTG

consensusID : consensus_9862#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 636
fasta sequence

                              [CGNAGGCCANATTTCGGCACGAGGCATTCTCAGGAATATTCAAATGTATAATGCCTTTCGCATCATTCAAGAATATCCAAAAACGACTCTCCAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGATACCATCTTGGTATACTACCGAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAAAGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACANGGAATTAT]

[+] EMBL CD083278             [CGNAGGCCANATTTCGGCACGAGGCATTCTCAGGAATATTCAAATGTATAATGCCTTTCGCATCATTCAAGAATATCCAAAAACGACTCTCCAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGATACCATCTTGGTATACTACCGAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAAAGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACATTTATGCTCAGCGTTTTAATGCTTACANGGAATTAT]
[+] EMBL CD193351             [                                                                                                                                                                                                                                 CTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGCCGAAGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGG                                                                                                      ]




>consensus_9862#3
CGNAGGCCANATTTCGGCACGAGGCATTCTCAGGAATATTCAAATGTATAATGCCTTTCG
CATCATTCAAGAATATCCAAAAACGACTCTCCAAAATCCACAAAGAACGTTCCCAACCTC
AATGTAGATACCATCTTGGTATACTACCGAAAAAACAGGATTTCCGTTTAAGAGCCAAGG
ATAAGGAATCAAAAAGTGCTAAAATAAAAGAGTTAAGAAGTAAAGCTTTAGATAAAAACA
CGGACGAATTTTACTTCAATATGTGTAATTCTCGTTTTGATATAGAAAAAGGGCATATTC
CATTAGATGTGGAAAAAAGTTATTCAGATTCTGAAATCAAATCATCATTTTATAGAAACA
TTACGCACCTACAGTACGAATTACAAAAAGAAATGTCCAAAATACATCAACTTGAGTCGA
AGACTCATTCCCTGCAAAGTGAATCACAGAATCCTTGTTCAAAGAAGACTCCCAGACATA
TTGTTTTTGCGGAAACCTATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAG
TACAAGTGGATGAAAATACTTTTGGTGAAGTGTCTTCCAGTGACCCCTATGTTGACGACA
TTTATGCTCAGCGTTTTAATGCTTACANGGAATTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9862#0      ATGATTCTACTTAGTTGAAAACTACCTAATGCAACCAAGCTGATTTATATATTGTTAATT 60
consensus_9862#3      --------------------------------CGNAGGCCANATTTCGGCACGAGGCATT 28
consensus_9862#1      ------------------------------------------------------------
consensus_9862#2      ------------------------------------------------------------
                                                                                  

consensus_9862#0      CTCAGGAATATTCAAATGTATAATGCCTTTCGCATCATTCAAGAATATCCAAAAACGACT 120
consensus_9862#3      CTCAGGAATATTCAAATGTATAATGCCTTTCGCATCATTCAAGAATATCCAAAAACGACT 88
consensus_9862#1      ------------------------------------------------------------
consensus_9862#2      ------------------------------------------------------------
                                                                                  

consensus_9862#0      CTCCAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGACACCATCTTGGTATACTACC 180
consensus_9862#3      CTCCAAAATCCACAAAGAACGTTCCCAACCTCAATGTAGATACCATCTTGGTATACTACC 148
consensus_9862#1      ------------------------------------------------------------
consensus_9862#2      ------------------------------------------------------------
                                                                                  

consensus_9862#0      GAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAA 240
consensus_9862#3      GAAAAAACAGGATTTCCGTTTAAGAGCCAAGGATAAGGAATCAAAAAGTGCTAAAATAAA 208
consensus_9862#1      ------------------------------------------------------------
consensus_9862#2      ---------------------------------------------------TTATTTATC 9
                                                                                  

consensus_9862#0      AGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAA 300
consensus_9862#3      AGAGTTAAGAAGTAAAGCTTTAGATAAAAACACGGACGAATTTTACTTCAATATGTGTAA 268
consensus_9862#1      -----TCGGTACGAGGGC-----ATAAAAACACGGACGAATTTTACTTCAATATGTGTAA 50
consensus_9862#2      CATGTTTGGGACTAGTA--------GTTATCCTAGAAGGGTGTTGTCCGGAATTATACCG 61
                           *  * *  *              * *   ** *  * **      *  * *    

consensus_9862#0      TTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATT-CAG 359
consensus_9862#3      TTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATT-CAG 327
consensus_9862#1      TTCTCGTTTTGATATAGAAAAAGGGCATATTCCATTAGATGTGGAAAAAAGTTATT-CAG 109
consensus_9862#2      TCCTTTGATAGATAGATGGACAGAATCCATGCAGTAACGGGTAAAATAATGTGAAGGCAA 121
                      * **    * **** *   * **     ** *  * *   **  ** ** ** *   ** 

consensus_9862#0      ATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCAC---CTACAGTACGAATTAC 416
consensus_9862#3      ATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCAC---CTACAGTACGAATTAC 384
consensus_9862#1      ATTCTGAAATCAAATCATCATTTTATAGAAACATTACGCAC---CTACAGTACGAATTAC 166
consensus_9862#2      AAGTATTCCTTAAGGTAATACAATTAAGAACCACTAAAAACGAACTAAAACAAAAATC-C 180
                      *        * **   *  *   *  **** ** **   **   *** *  *  ***  *

consensus_9862#0      AAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAG--ACTCATTCCCTGCAAAGTGA 474
consensus_9862#3      AAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAG--ACTCATTCCCTGCAAAGTGA 442
consensus_9862#1      AAAAAGAAATGTCCAAAATACATCAACTTGAGTCGAAG--ACTCATTCCCTGCAAAGTGA 224
consensus_9862#2      ACAGATTGCTTTTCACGTCATCATAAGTACTACTAACGTTACTGATTTTCGGTCTGTTAT 240
                      * * *    * * **    *    ** *       * *  *** ***  * *     *  

consensus_9862#0      ATCACAGA--------ATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAA 526
consensus_9862#3      ATCACAGA--------ATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAA 494
consensus_9862#1      ATCACAGA--------ATCCTTGTTCAAAGAAGACTCCCAGACATATTGTTTTTGCGGAA 276
consensus_9862#2      ATTACAAACACCAACGACCGATACTCCATGTCTCTACTCAATTAAAAAGAACAAAATAAG 300
                      ** *** *        * *  *  ** * *      * **   * *  *         * 

consensus_9862#0      ACCT-ATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGA 585
consensus_9862#3      ACCT-ATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGA 553
consensus_9862#1      ACCT-ATGGTGAAATAGTTGAACTAAATCACAAATATGCGGAGAAAGTACAAGTGGATGA 335
consensus_9862#2      GCCTCATAAGACAATGTCATATTTATCTAGCCGTCTCGTTATTTTACTTCACTTTGGAAT 360
                       *** **     ***     *  **  *  *      *       * * **  * *    

consensus_9862#0      AAATACTTTTGGTGAAGT-GTCTTCCAGTGACCCC-----TATGTTGACGACATTTATGC 639
consensus_9862#3      AAATACTTTTGGTGAAGT-GTCTTCCAGTGACCCC-----TATGTTGACGACATTTATGC 607
consensus_9862#1      AAATACTTTTGGTGAAGT-GTCTTCCAGTGACCCC-----TATGTTGACGACATTTATGC 389
consensus_9862#2      AAACTGTTATGATAAGCTTATGTTTCAGTGTACCTAAATTCATGTGTAAAACACTGATAT 420
                      ***   ** ** * *  *  * ** *****  **       ****  *  *** * **  

consensus_9862#0      TCAGCGTTTTAATGCTTTACAGGAATTATCTGAACATCTAGAAAGAGCCANACAGTTGAA 699
consensus_9862#3      TCAGCGTTTTAATGCTTACANGGAATTAT------------------------------- 636
consensus_9862#1      TCAGCGTTTTAATGCTTACAAGGAATTATCTGAACATCTAGAAAGAGCCAAACAGTTGAA 449
consensus_9862#2      GGTGGGTCGAGCCGAATTCAAAGTACTTTTTTTCTAT---GAAAGTAAATATTCCTTTTA 477
                         * **      *  *     * * * *                               

consensus_9862#0      ATATCTTTTACG------------------------------------------------ 711
consensus_9862#3      ------------------------------------------------------------
consensus_9862#1      ATATCTTTTACGTCAGCATGAGGCTAAGAAAAGTCTTATGGCAAATTTAACCAAAAGAGC 509
consensus_9862#2      TCGTACCTTACCATCTGAAGTGTAATTTATTTTCCACTAGGCANATTTAACCAAAAGAGC 537
                                                                                  

consensus_9862#0      ------------------------------------------------------------
consensus_9862#3      ------------------------------------------------------------
consensus_9862#1      GTACAAAACAGTTTTCAAAGGAAATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGT 569
consensus_9862#2      GTACAAAACAGTTTTCANAGGANATAAGACAGCGCCTCCCGTTTATGAGTTTGAACGTGT 597
                                                                                  

consensus_9862#0      ------------------------------------------------------------
consensus_9862#3      ------------------------------------------------------------
consensus_9862#1      CCGGGATCGATGAACACTTGGATTTTGTTTAGTTATCTAATTTGTGCATTTCATTGTGCT 629
consensus_9862#2      CCGGGATCGATGAACACTTGGATTTTGTT-AGNTATCTAATTNGNGCATTTCATTG---- 652
                                                                                  

consensus_9862#0      -----------------------------------
consensus_9862#3      -----------------------------------
consensus_9862#1      TGATATATGTCCAGGAACATCTAAAAAAGTTTTTC 664
consensus_9862#2      -----------------------------------