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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9864#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 964 fasta sequence
[GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAATAACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAATTTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAAGACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGTATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACGG]
[-] EMBL CD160228 [GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAATAACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAATTTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTT ]
[-] EMBL CD160110 [ TGGATCCATAGTGAATAATTTGTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATTTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATCCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTT ]
[+] EMBL CD155919 [ CTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAAGACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGTATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAA ]
[-] EMBL CD181205 [ CCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTtcntga ]
[+] EMBL CD199665 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199685 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199745 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199766 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199771 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199655 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[-] EMBL CD199672 [ AAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACGG]
consensusID : consensus_9864#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence
[CTATACCATTTGGCTCAATCGCCAATATGATACTAACAAGAAAAAATTGTCAAGTATGTATTATTGTGTTTAATGCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTAATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTTTCCCAAAAAATGTTGAAATGTACTGTTCATTTTATTCTTATGAATATCANAGC]
[+] EMBL CD183022 [CTATACCATTTGGCTCAATCGCCAATATGATACTAACAAGAAAAAATTGTCAAGTATGTATTATTGTGTTTAATGCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTAATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTTTCCCAAAAAATGTTGAAATGTACTGTTCATTTTATTCTTATGAATATCANAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9864#0 GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAAT 60
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 AACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAAT 120
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 TTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTT 180
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 TTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTC 240
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 CATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGT 300
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 TGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACA 360
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 CCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCA 420
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 TGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAA 480
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 GACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATA 540
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 TGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTA 600
consensus_9864#1 ----------------------------------------------------CTATACCA 8
* ** *
consensus_9864#0 GCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATAT 660
consensus_9864#1 TTTGGCTCAATCGCCAATATGATACTAACAAGAAA----AAATTGTCAAGTATGTATTAT 64
* ** * ** ** * * * * * * ** ** * ***
consensus_9864#0 T-TGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGT 719
consensus_9864#1 TGTGTTTAAT--GCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTA 122
* ** * *** ** * *** * * * ** * * * * * * *
consensus_9864#0 ATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACA 779
consensus_9864#1 ATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTT-TCCCAAAAAATG-TTGAAA 180
*** ** *** **** ** * ** *** * *** **** **** *
consensus_9864#0 ATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAAC 839
consensus_9864#1 TGTACTGTTCATTTTATTCTTATGAATATCANAGC------------------------- 215
* * * ** ** *** ***
consensus_9864#0 TTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAA 899
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 AGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAAC 959
consensus_9864#1 ------------------------------------------------------------
consensus_9864#0 TACGG 964
consensus_9864#1 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||